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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-255

141 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG23318 ENSCBRT00000012362 Nuclear Hormone Receptor family member (nhr-68) [Source:RefSeq_peptide;Acc:NP_505936]Nuclear Hormone Receptor family member (nhr-68) [Source:RefSeq_peptide;Acc:NP_505936] BY ORTHOLOGY TO:H12C20.3
18.605 -23.9 5.93675e-05 1300 1 2 1 [+] picture button
CBG20699 ENSCBRT00000001494 Nuclear Hormone Receptor family member (nhr-70) [Source:RefSeq_peptide;Acc:NP_507636]Nuclear Hormone Receptor family member (nhr-70) [Source:RefSeq_peptide;Acc:NP_507636] BY ORTHOLOGY TO:Y51A2D.17
17.3667 -15.19 0.000828776 1300 6 1 6 [+] picture button
CBG16639 ENSCBRT00000014666 F10E9.4 [Source:RefSeq_peptide;Acc:NP_498825]F10E9.4 [Source:RefSeq_peptide;Acc:NP_498825] BY ORTHOLOGY TO:F10E9.4
17.1651 -14.71 0.00157091 1300 2 1 2 [+] picture button
CBG19344 ENSCBRT00000013531 ZK287.7 [Source:RefSeq_peptide;Acc:NP_505498]ZK287.7 [Source:RefSeq_peptide;Acc:NP_505498] BY ORTHOLOGY TO:ZK287.7
16.9262 -14.77 0.00162015 1300 2 1 2 [+] picture button
CBG10811 ENSCBRT00000012523 tag-300/Y110A7A.12 encodes an ortholog of subunit B of the cytoplasmic (V1) domain of vacuolar proton-translocating ATPase (V-ATPase). TAG-300/Y110A7A.12 is orthologous to human ATP6V1B1 (OMIM:192132, mutated in distal renal tubular acidosis with progressive sensorineural deafness) and ATP6V1B2 (OMIM:606939). TAG-300/Y110A7A.12 and VHA-12 are co-orthologs. tag-300/Y110A7A.12 has been reported to be spe-5, and (like unc-32 and vha-12) mutations of spe-5 suppress necrotic neurodegeneration. TAG-300/Y110A7A.12 is predicted to bind ATP as part of a cytosolic VHA-12/VHA-13 heterohexamer, whose ATP hydrolysis drives the V-ATPase rotor. [Source: WormBase]tag-300/Y110A7A.12 encodes an ortholog of subunit B of the cytoplasmic (V1) domain of vacuolar proton-translocating ATPase (V-ATPase). TAG-300/Y110A7A.12 is orthologous to human ATP6V1B1 (OMIM:192132, mutated in distal renal tubular acidosis with progressive sensorineural deafness) and ATP6V1B2 (OMIM:606939). TAG-300/Y110A7A.12 and VHA-12 are co-orthologs. tag-300/Y110A7A.12 has been reported to be spe-5, and (like unc-32 and vha-12) mutations of spe-5 suppress necrotic neurodegeneration. TAG-300/Y110A7A.12 is predicted to bind ATP as part of a cytosolic VHA-12/VHA-13 heterohexamer, whose ATP hydrolysis drives the V-ATPase rotor. [Source: WormBase] BY ORTHOLOGY TO:Y110A7A.12
17.1214 -18.78 0.00174645 1300 4 1 3 [+] picture button
CBG20767 ENSCBRT00000001353 F54F11.1 [Source:RefSeq_peptide;Acc:NP_496841]F54F11.1 [Source:RefSeq_peptide;Acc:NP_496841] BY ORTHOLOGY TO:F54F11.1
16.3724 -13.27 0.00237584 1300 4 1 3 [+] picture button
CBG23126 ENSCBRT00000012039 T19C4.5 [Source:RefSeq_peptide;Acc:NP_505839]T19C4.5 [Source:RefSeq_peptide;Acc:NP_505839] BY ORTHOLOGY TO:T19C4.5
16.6648 -14.42 0.00299661 1300 4 1 5 [+] picture button
CBG08978 ENSCBRT00000008497 F56D2.5 [Source:RefSeq_peptide;Acc:NP_498196]F56D2.5 [Source:RefSeq_peptide;Acc:NP_498196] BY ORTHOLOGY TO:F56D2.5
16.9444 -17.3 0.00319341 1300 4 1 6 [+] picture button
CBG23116 ENSCBRT00000012027 C06H2.4 is orthologous to the human gene THIAMINE TRANSPORTER 1 (SLC19A2. OMIM:603941), which when mutated leads to disease. [Source: WormBase]C06H2.4 is orthologous to the human gene THIAMINE TRANSPORTER 1 (SLC19A2. OMIM:603941), which when mutated leads to disease. [Source: WormBase] BY ORTHOLOGY TO:C06H2.4
16.6 -16.15 0.00322592 1300 4 2 6 [+] picture button
CBG12374 ENSCBRT00000013113 14 kDa phosphohistidine phosphatase (EC 3.1.3.-) (Phosphohistidine phosphatase 1) (Protein janus-A homolog). [Source:Uniprot/SWISSPROT;Acc:Q9NRX4]14 kDa phosphohistidine phosphatase (EC 3.1.3.-) (Phosphohistidine phosphatase 1) (Protein janus-A homolog). [Source:Uniprot/SWISSPROT;Acc:Q9NRX4] BY ORTHOLOGY TO:ENSGALT00000034236
16.5899 -10.65 0.0034147 1300 3 1 3 [+] picture button
CBG19023 ENSCBRT00000014074 T15B7.12 [Source:RefSeq_peptide;Acc:NP_504730]T15B7.12 [Source:RefSeq_peptide;Acc:NP_504730] BY ORTHOLOGY TO:T15B7.12
16.4699 -13.06 0.00410853 1300 6 1 6 [+] picture button
CBG08675 ENSCBRT00000002936 Serpentine Receptor, class AB (class A-like) family member (srab-1) [Source:RefSeq_peptide;Acc:NP_504366]Serpentine Receptor, class AB (class A-like) family member (srab-1) [Source:RefSeq_peptide;Acc:NP_504366] BY ORTHOLOGY TO:C04F5.4
16.4314 -16.08 0.00415698 1300 4 1 4 [+] picture button
CBG23248 ENSCBRT00000012251 Alpha-catenin. [Source:Uniprot/SWISSPROT;Acc:P35220]Alpha-catenin. [Source:Uniprot/SWISSPROT;Acc:P35220] BY ORTHOLOGY TO:CG17947-RA
16.8208 -17.04 0.00428233 1300 1 2 1 [+] picture button
CBG02455 ENSCBRT00000006527 D1081.5 [Source:RefSeq_peptide;Acc:NP_492299]D1081.5 [Source:RefSeq_peptide;Acc:NP_492299] BY ORTHOLOGY TO:D1081.5
17.1067 -15.66 0.00459982 1300 5 1 3 [+] picture button
CBG16546 ENSCBRT00000014587 This gene encodes a homolog of mammalian TNX [Source: WormBase]This gene encodes a homolog of mammalian TNX [Source: WormBase] BY ORTHOLOGY TO:R13F6.4a
17.0559 -13.43 0.00640164 1300 4 1 7 [+] picture button
CBG17583 ENSCBRT00000002122 C05A9.3 [Source:RefSeq_peptide;Acc:NP_509808]C05A9.3 [Source:RefSeq_peptide;Acc:NP_509808] BY ORTHOLOGY TO:C05A9.3
16.3619 -12.64 0.00662258 1300 2 1 2 [+] picture button
CBG10404 ENSCBRT00000007886 T23G4.4 [Source:RefSeq_peptide;Acc:NP_502643]T23G4.4 [Source:RefSeq_peptide;Acc:NP_502643] BY ORTHOLOGY TO:T23G4.4
16.2008 -16.9 0.0066258 1300 5 2 5 [+] picture button
CBG14650 ENSCBRT00000006902 Y34B4A.8 [Source:RefSeq_peptide;Acc:NP_508894]Y34B4A.8 [Source:RefSeq_peptide;Acc:NP_508894] BY ORTHOLOGY TO:Y34B4A.8
16.3897 -10.01 0.00709014 1300 6 1 6 [+] picture button
CBG05529 ENSCBRT00000004881 K+/Cl- Cotransporter family member (kcc-3) [Source:RefSeq_peptide;Acc:NP_500910]K+/Cl- Cotransporter family member (kcc-3) [Source:RefSeq_peptide;Acc:NP_500910] BY ORTHOLOGY TO:H16O14.1
16.2523 -12.46 0.00718968 1300 2 1 4 [+] picture button
CBG18783 ENSCBRT00000012692 F09C3.2 [Source:RefSeq_peptide;Acc:NP_493493]F09C3.2 [Source:RefSeq_peptide;Acc:NP_493493] BY ORTHOLOGY TO:F09C3.2
16.3142 -14.8 0.00755701 1300 4 1 4 [+] picture button
CBG13621 ENSCBRT00000002339 W04A8.6 [Source:RefSeq_peptide;Acc:NP_493425]W04A8.6 [Source:RefSeq_peptide;Acc:NP_493425] BY ORTHOLOGY TO:W04A8.6
18.615 -20.69 0.00762887 1300 3 1 4 [+] picture button
CBG13922 ENSCBRT00000013642 COLlagen family member (col-106) [Source:RefSeq_peptide;Acc:NP_741318]COLlagen family member (col-106) [Source:RefSeq_peptide;Acc:NP_741318] BY ORTHOLOGY TO:Y77E11A.15
16.477 -14.24 0.00762985 1300 5 1 5 [+] picture button
CBG09099 ENSCBRT00000008551 F40H6.5 [Source:RefSeq_peptide;Acc:NP_498318]F40H6.5 [Source:RefSeq_peptide;Acc:NP_498318] BY ORTHOLOGY TO:F40H6.5
16.0886 -14.23 0.00784512 1300 1 1 1 [+] picture button
CBG23111 ENSCBRT00000012026 jumonji domain containing 5 [Source:RefSeq_peptide;Acc:NP_079049]jumonji domain containing 5 [Source:RefSeq_peptide;Acc:NP_079049] BY ORTHOLOGY TO:ENSGALT00000010182
16.1217 -10.62 0.00802337 1300 2 1 2 [+] picture button
CBG06550 ENSCBRT00000011023 Nuclear Hormone Receptor family member (nhr-256) [Source:RefSeq_peptide;Acc:NP_503495]Nuclear Hormone Receptor family member (nhr-256) [Source:RefSeq_peptide;Acc:NP_503495] BY ORTHOLOGY TO:ZK697.2
16.0718 -12.67 0.00808902 1300 3 1 3 [+] picture button
CBG24465 ENSCBRT00000010601 ZK265.2 [Source:RefSeq_peptide;Acc:NP_492245]ZK265.2 [Source:RefSeq_peptide;Acc:NP_492245] BY ORTHOLOGY TO:ZK265.2
18.5336 -14.73 0.00827336 1300 7 1 14 [+] picture button
CBG17683 ENSCBRT00000002258 The ric-3 gene encodes a novel, highly charged protein with two transmembrane domains and extensive coiled-coil domains. it is necessary for the function of at least four nicotinic acetylcholine receptors. specifically, it is needed for assembly or trafficking of the DEG-3 nicotinic acetylcholine receptor. [Source: WormBase]The ric-3 gene encodes a novel, highly charged protein with two transmembrane domains and extensive coiled-coil domains. it is necessary for the function of at least four nicotinic acetylcholine receptors. specifically, it is needed for assembly or trafficking of the DEG-3 nicotinic acetylcholine receptor. [Source: WormBase] BY ORTHOLOGY TO:T14A8.1
18.5164 -25.07 0.00841641 1300 5 1 5 [+] picture button
CBG13093 ENSCBRT00000000095 Serpentine Receptor, class D (delta) family member (srd-58) [Source:RefSeq_peptide;Acc:NP_495498]Serpentine Receptor, class D (delta) family member (srd-58) [Source:RefSeq_peptide;Acc:NP_495498] BY ORTHOLOGY TO:E04F6.13
16.5785 -12.72 0.00858875 1300 3 1 3 [+] picture button
CBG10119 ENSCBRT00000007413 Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating enzyme 1). [Source:Uniprot/SWISSPROT;Acc:Q5E953]Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating enzyme 1). [Source:Uniprot/SWISSPROT;Acc:Q5E953] BY ORTHOLOGY TO:ENSBTAT00000028928
16.2848 -16.89 0.00858875 1300 1 2 1 [+] picture button
CBG16432 ENSCBRT00000011506 polynucleotide kinase 3'- phosphatase [Source:MarkerSymbol;Acc:MGI:1891698]polynucleotide kinase 3'- phosphatase [Source:MarkerSymbol;Acc:MGI:1891698] BY ORTHOLOGY TO:ENSMUST00000003044
17.0972 -8.16 0.00858875 1300 7 1 8 [+] picture button
CBG23418 ENSCBRT00000011535 T04H1.3 [Source:RefSeq_peptide;Acc:NP_506068]T04H1.3 [Source:RefSeq_peptide;Acc:NP_506068] BY ORTHOLOGY TO:T04H1.3
16.2206 -13.36 0.00872145 1300 3 2 5 [+] picture button
CBG12107 ENSCBRT00000013352 coiled-coil domain containing 128 [Source:MarkerSymbol;Acc:MGI:1921075]coiled-coil domain containing 128 [Source:MarkerSymbol;Acc:MGI:1921075] BY ORTHOLOGY TO:ENSMUST00000038551
16.0177 -11.29 0.00892604 1300 3 1 3 [+] picture button
CBG00604 ENSCBRT00000003335 F56C9.8 [Source:RefSeq_peptide;Acc:NP_498613]F56C9.8 [Source:RefSeq_peptide;Acc:NP_498613] BY ORTHOLOGY TO:F56C9.8
18.446 -21.52 0.00902765 1300 4 1 4 [+] picture button
CBG03217 ENSCBRT00000006840 T21B10.4 [Source:RefSeq_peptide;Acc:NP_495903]T21B10.4 [Source:RefSeq_peptide;Acc:NP_495903] BY ORTHOLOGY TO:T21B10.4
17.3514 -11.99 0.00907388 1300 3 1 2 [+] picture button
CBG03316 ENSCBRT00000007083 ZC518.1a [Source:RefSeq_peptide;Acc:NP_502353]ZC518.1a [Source:RefSeq_peptide;Acc:NP_502353] BY ORTHOLOGY TO:ZC518.1a
16.4035 -15.8 0.00917371 1300 2 1 2 [+] picture button
CBG20945 ENSCBRT00000000617 Serpentine Receptor, class E (epsilon) family member (sre-51) [Source:RefSeq_peptide;Acc:NP_496614]Serpentine Receptor, class E (epsilon) family member (sre-51) [Source:RefSeq_peptide;Acc:NP_496614] BY ORTHOLOGY TO:C50E10.10
18.4199 -13.72 0.00926539 1300 5 1 5 [+] picture button
CBG16928 ENSCBRT00000011716 C34E7.3 [Source:RefSeq_peptide;Acc:NP_510148]C34E7.3 [Source:RefSeq_peptide;Acc:NP_510148] BY ORTHOLOGY TO:C34E7.3
18.4131 -22.47 0.00932834 1300 4 1 7 [+] picture button
CBG07560 ENSCBRT00000011156 C44H4.6 [Source:RefSeq_peptide;Acc:NP_510429]C44H4.6 [Source:RefSeq_peptide;Acc:NP_510429] BY ORTHOLOGY TO:C44H4.6
16.1673 -10.86 0.00987103 1300 3 1 3 [+] picture button
CBG09003 ENSCBRT00000008465 B0336.3 [Source:RefSeq_peptide;Acc:NP_498234]B0336.3 [Source:RefSeq_peptide;Acc:NP_498234] BY ORTHOLOGY TO:B0336.3
16.2476 -13.55 0.0101185 1300 6 2 7 [+] picture button
CBG12369 ENSCBRT00000013118 kuzbaniankuzbanian BY ORTHOLOGY TO:AAEL002663-RA
16.0459 -11.92 0.010151 1300 4 2 8 [+] picture button
CBG00050 ENSCBRT00000001560 eca-39 encodes a branched-chain amino acid aminotransferase that, by homology, is predicted to catalyze the first reaction in the catabolism of essential branched-chain amino acids such as leucine, isoleucine, and valine. in C. elegans, large-scale RNA-mediated interference (RNAi) screens indicate that eca-39 activity is required for embryonic and larval development. [Source: WormBase]eca-39 encodes a branched-chain amino acid aminotransferase that, by homology, is predicted to catalyze the first reaction in the catabolism of essential branched-chain amino acids such as leucine, isoleucine, and valine. in C. elegans, large-scale RNA-mediated interference (RNAi) screens indicate that eca-39 activity is required for embryonic and larval development. [Source: WormBase] BY ORTHOLOGY TO:K02A4.1
18.2364 -16.67 0.0111207 1300 2 1 2 [+] picture button
CBG01799 ENSCBRT00000005659 Synaptojanin-1 (EC 3.1.3.36) (Synaptic inositol-1,4,5-trisphosphate 5- phosphatase 1). [Source:Uniprot/SWISSPROT;Acc:O43426]Synaptojanin-1 (EC 3.1.3.36) (Synaptic inositol-1,4,5-trisphosphate 5- phosphatase 1). [Source:Uniprot/SWISSPROT;Acc:O43426] BY ORTHOLOGY TO:ENSMMUT00000042601
18.0333 -16.08 0.0136045 1300 4 1 6 [+] picture button
CBG22241 ENSCBRT00000003679 C44E4.2 [Source:RefSeq_peptide;Acc:NP_491410]C44E4.2 [Source:RefSeq_peptide;Acc:NP_491410] BY ORTHOLOGY TO:C44E4.2
16.9714 -14.31 0.0145172 1300 5 2 5 [+] picture button
CBG05220 ENSCBRT00000003921 K03A11.5 [Source:RefSeq_peptide;Acc:NP_510167]K03A11.5 [Source:RefSeq_peptide;Acc:NP_510167] BY ORTHOLOGY TO:K03A11.5
17.8358 -19.06 0.0165402 1300 6 2 5 [+] picture button
CBG22724 ENSCBRT00000004221 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL001818-RA
17.7368 -13.07 0.018239 1300 3 2 4 [+] picture button
CBG10976 ENSCBRT00000001210 hen-1 encodes a secretory protein that contains a low-density lipoprotein receptor class A domain and affects integration of sensory stimuli and behavioral plasticity. expressed in pharyngeal muscles, the vulva, and is weakly expressed in a subset of neurons. [Source: WormBase]hen-1 encodes a secretory protein that contains a low-density lipoprotein receptor class A domain and affects integration of sensory stimuli and behavioral plasticity. expressed in pharyngeal muscles, the vulva, and is weakly expressed in a subset of neurons. [Source: WormBase] BY ORTHOLOGY TO:C36B7.7
17.7254 -18.87 0.0184459 1300 3 1 3 [+] picture button
CBG14139 ENSCBRT00000002577 SPeCtrin family member (spc-1) [Source:RefSeq_peptide;Acc:NP_508537]SPeCtrin family member (spc-1) [Source:RefSeq_peptide;Acc:NP_508537] BY ORTHOLOGY TO:K10B3.10
17.662 -11.8 0.0196345 1300 3 1 3 [+] picture button
CBG03949 ENSCBRT00000009989 F57C9.6 [Source:RefSeq_peptide;Acc:NP_491456]F57C9.6 [Source:RefSeq_peptide;Acc:NP_491456] BY ORTHOLOGY TO:F57C9.6
17.6314 -14.84 0.0202348 1300 5 1 5 [+] picture button
CBG13336 ENSCBRT00000009499 C41C4.1 [Source:RefSeq_peptide;Acc:NP_495699]C41C4.1 [Source:RefSeq_peptide;Acc:NP_495699] BY ORTHOLOGY TO:C41C4.1
17.6173 -12.88 0.0205167 1300 2 1 2 [+] picture button
CBG08748 ENSCBRT00000005231 AP-1 complex subunit gamma-1 (Adapter-related protein complex 1 gamma- 1 subunit) (Gamma-adaptin) (Adaptor protein complex AP-1 gamma-1 subunit) (Golgi adaptor HA1/AP1 adaptin subunit gamma-1) (Clathrin assembly protein complex 1 gamma-1 large chain). [Source:Uniprot/SWISSPROT;Acc:O43747]AP-1 complex subunit gamma-1 (Adapter-related protein complex 1 gamma- 1 subunit) (Gamma-adaptin) (Adaptor protein complex AP-1 gamma-1 subunit) (Golgi adaptor HA1/AP1 adaptin subunit gamma-1) (Clathrin assembly protein complex 1 gamma-1 large chain). [Source:Uniprot/SWISSPROT;Acc:O43747] BY ORTHOLOGY TO:SINFRUT00000129504
17.5658 -22.13 0.0215836 1300 3 2 6 [+] picture button

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