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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-254

173 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG24496 ENSCBRT00000011175 Alpha-1-syntrophin (59 kDa dystrophin-associated protein A1 acidic component 1) (Pro-TGF-alpha cytoplasmic domain-interacting protein 1) (TACIP1) (Syntrophin 1). [Source:Uniprot/SWISSPROT;Acc:Q13424]Alpha-1-syntrophin (59 kDa dystrophin-associated protein A1 acidic component 1) (Pro-TGF-alpha cytoplasmic domain-interacting protein 1) (TACIP1) (Syntrophin 1). [Source:Uniprot/SWISSPROT;Acc:Q13424] BY ORTHOLOGY TO:ENSMODT00000003787
15.9244 -16.32 3.28837e-05 1300 6 1 5 [+] picture button
CBG11534 ENSCBRT00000013805 C50B8.5 [Source:RefSeq_peptide;Acc:NP_506364]C50B8.5 [Source:RefSeq_peptide;Acc:NP_506364] BY ORTHOLOGY TO:C50B8.5
16.5058 -20.37 0.000381194 1300 6 2 6 [+] picture button
CBG09036 ENSCBRT00000008411 CDK5RAP1-like protein. [Source:Uniprot/SWISSPROT;Acc:Q9VGZ1]CDK5RAP1-like protein. [Source:Uniprot/SWISSPROT;Acc:Q9VGZ1] BY ORTHOLOGY TO:CG6345-RA
16.1186 -15.35 0.000385159 1300 7 1 4 [+] picture button
CBG12253 ENSCBRT00000013318 Ubiquitin-fold modifier 1 precursor. [Source:Uniprot/SWISSPROT;Acc:P61960]Ubiquitin-fold modifier 1 precursor. [Source:Uniprot/SWISSPROT;Acc:P61960] BY ORTHOLOGY TO:ENSOANT00000024425
16.9025 -13.6 0.00132636 1300 2 1 2 [+] picture button
CBG21211 ENSCBRT00000000875 F45G2.3 [Source:RefSeq_peptide;Acc:NP_499770]F45G2.3 [Source:RefSeq_peptide;Acc:NP_499770] BY ORTHOLOGY TO:F45G2.3
15.6604 -20.07 0.00196418 1300 3 1 4 [+] picture button
CBG10711 ENSCBRT00000012469 Y55F3C.3 [Source:RefSeq_peptide;Acc:NP_499978]Y55F3C.3 [Source:RefSeq_peptide;Acc:NP_499978] BY ORTHOLOGY TO:Y55F3C.3
16.1295 -15.53 0.00241105 1300 2 1 2 [+] picture button
CBG18174 ENSCBRT00000003381 Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa subunit) (p41-ARC). [Source:Uniprot/SWISSPROT;Acc:O88656]Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa subunit) (p41-ARC). [Source:Uniprot/SWISSPROT;Acc:O88656] BY ORTHOLOGY TO:ENSRNOT00000001315
15.8215 -11.76 0.00243995 1300 3 1 2 [+] picture button
CBG01258 ENSCBRT00000005094 CYtochrome P450 family member (cyp-32B1) [Source:RefSeq_peptide;Acc:NP_503598]CYtochrome P450 family member (cyp-32B1) [Source:RefSeq_peptide;Acc:NP_503598] BY ORTHOLOGY TO:Y5H2B.5
15.6437 -16.04 0.00247828 1300 2 1 1 [+] picture button
ENSCBRT00000007868 F15D4.7 [Source:RefSeq_peptide;Acc:NP_496808]F15D4.7 [Source:RefSeq_peptide;Acc:NP_496808] BY ORTHOLOGY TO:F15D4.7
18.2658 -20.44 0.00255019 1300 4 1 6 [+] picture button
CBG14831 ENSCBRT00000006945 CG1021-PB, isoform B [Source:RefSeq_peptide;Acc:NP_649654]CG1021-PB, isoform B [Source:RefSeq_peptide;Acc:NP_649654] BY ORTHOLOGY TO:CG1021-RA
16.1743 -16.77 0.00278298 1300 4 2 3 [+] picture button
CBG02467 ENSCBRT00000006516 C25H3.12 [Source:RefSeq_peptide;Acc:NP_495107]C25H3.12 [Source:RefSeq_peptide;Acc:NP_495107] BY ORTHOLOGY TO:C25H3.12
16.2048 -13.55 0.00317289 1300 4 1 3 [+] picture button
CBG21021 ENSCBRT00000000702 Y17G7B.6 [Source:RefSeq_peptide;Acc:NP_496559]Y17G7B.6 [Source:RefSeq_peptide;Acc:NP_496559] BY ORTHOLOGY TO:Y17G7B.6
15.6925 -13.03 0.00323382 1300 5 2 5 [+] picture button
CBG04248 ENSCBRT00000007654 Y54E2A.10 [Source:RefSeq_peptide;Acc:NP_497066]Y54E2A.10 [Source:RefSeq_peptide;Acc:NP_497066] BY ORTHOLOGY TO:Y54E2A.10
15.6871 -14.81 0.0034124 1300 2 1 1 [+] picture button
CBG10720 ENSCBRT00000012472 COLlagen family member (col-103) [Source:RefSeq_peptide;Acc:NP_499982]COLlagen family member (col-103) [Source:RefSeq_peptide;Acc:NP_499982] BY ORTHOLOGY TO:F56B3.1
15.4482 -13.93 0.00343235 1300 3 2 3 [+] picture button
CBG16187 ENSCBRT00000012597 Uncharacterized protein C3orf23. [Source:Uniprot/SWISSPROT;Acc:Q8N3R3]Uncharacterized protein C3orf23. [Source:Uniprot/SWISSPROT;Acc:Q8N3R3] BY ORTHOLOGY TO:ENST00000342649
15.3912 -19.3 0.00343765 1300 4 1 4 [+] picture button
CBG00232 ENSCBRT00000001503 C24A3.4 [Source:RefSeq_peptide;Acc:NP_509517]C24A3.4 [Source:RefSeq_peptide;Acc:NP_509517] BY ORTHOLOGY TO:C24A3.4
15.8053 -14.71 0.00378892 1300 4 2 4 [+] picture button
CBG00661 ENSCBRT00000003223 PUF (Pumilio/FBF) domain-containing family member (puf-5) [Source:RefSeq_peptide;Acc:NP_495814]PUF (Pumilio/FBF) domain-containing family member (puf-5) [Source:RefSeq_peptide;Acc:NP_495814] BY ORTHOLOGY TO:F54C9.8
15.2213 -15.91 0.00402061 1300 6 1 6 [+] picture button
CBG10951 ENSCBRT00000001238 F01E11.4 [Source:RefSeq_peptide;Acc:NP_509183]F01E11.4 [Source:RefSeq_peptide;Acc:NP_509183] BY ORTHOLOGY TO:F01E11.4
15.9832 -16.58 0.00414711 1300 4 1 3 [+] picture button
CBG14956 ENSCBRT00000004428 The sep-1 gene encodes a homolog of separase, a protease that splits segregating chromosomes at their centromeres during anaphase by proteolyzing the Scc1 subunit of cohesin. [Source: WormBase]The sep-1 gene encodes a homolog of separase, a protease that splits segregating chromosomes at their centromeres during anaphase by proteolyzing the Scc1 subunit of cohesin. [Source: WormBase] BY ORTHOLOGY TO:Y47G6A.12
17.7573 -20.37 0.00450195 1300 3 1 3 [+] picture button
CBG16691 ENSCBRT00000014642 clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase] BY ORTHOLOGY TO:C01C10.4
16.7176 -22.68 0.00450876 1300 4 1 4 [+] picture button
CBG13934 ENSCBRT00000013631 Y77E11A.14 [Source:RefSeq_peptide;Acc:NP_500075]Y77E11A.14 [Source:RefSeq_peptide;Acc:NP_500075] BY ORTHOLOGY TO:Y77E11A.14
15.8889 -14.91 0.00458111 1300 4 2 5 [+] picture button
CBG10369 ENSCBRT00000007861 Serpentine Receptor, class X family member (srx-5) [Source:RefSeq_peptide;Acc:NP_503299]Serpentine Receptor, class X family member (srx-5) [Source:RefSeq_peptide;Acc:NP_503299] BY ORTHOLOGY TO:Y49C4A.4
17.6842 -14.8 0.00488475 1300 5 1 6 [+] picture button
CBG06947 ENSCBRT00000007397 Protein CLASP-3. [Source:Uniprot/SWISSPROT;Acc:Q03609]Protein CLASP-3. [Source:Uniprot/SWISSPROT;Acc:Q03609] BY ORTHOLOGY TO:ZC84.3
17.555 -20.24 0.00564236 1300 5 1 4 [+] picture button
CBG20762 ENSCBRT00000001359 Y48E1B.2a [Source:RefSeq_peptide;Acc:NP_496845]Y48E1B.2a [Source:RefSeq_peptide;Acc:NP_496845] BY ORTHOLOGY TO:Y48E1B.2b
16.291 -16.67 0.00572706 1300 6 1 7 [+] picture button
CBG00618 ENSCBRT00000003257 M05D6.4 [Source:RefSeq_peptide;Acc:NP_495790]M05D6.4 [Source:RefSeq_peptide;Acc:NP_495790] BY ORTHOLOGY TO:M05D6.4
15.7302 -19.5 0.00698298 1300 4 1 5 [+] picture button
CBG02534 ENSCBRT00000006462 Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3). [Source:Uniprot/SWISSPROT;Acc:Q96QK1]Vacuolar protein sorting-associated protein 35 (Vesicle protein sorting 35) (hVPS35) (Maternal-embryonic 3). [Source:Uniprot/SWISSPROT;Acc:Q96QK1] BY ORTHOLOGY TO:ENSMMUT00000016723
15.1374 -14.02 0.00738105 1300 4 1 3 [+] picture button
CBG05063 ENSCBRT00000010255 K10C2.2 [Source:RefSeq_peptide;Acc:NP_509080]K10C2.2 [Source:RefSeq_peptide;Acc:NP_509080] BY ORTHOLOGY TO:K10C2.2
15.0403 -15.72 0.0078123 1300 2 1 2 [+] picture button
CBG04127 ENSCBRT00000010047 F40E3.2 [Source:RefSeq_peptide;Acc:NP_491018]F40E3.2 [Source:RefSeq_peptide;Acc:NP_491018] BY ORTHOLOGY TO:F40E3.2
14.9807 -11.52 0.00851199 1300 5 1 10 [+] picture button
CBG02864 ENSCBRT00000006202 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL011462-RA
15.0505 -16.24 0.00865233 1300 3 1 3 [+] picture button
CBG07052 ENSCBRT00000012419 Valacyclovir hydrolase precursor (EC 3.1.-.-) (VACVase) (Biphenyl hydrolase-like protein) (Biphenyl hydrolase-related protein) (Bph-rp) (Breast epithelial mucin-associated antigen) (MCNAA). [Source:Uniprot/SWISSPROT;Acc:Q86WA6]Valacyclovir hydrolase precursor (EC 3.1.-.-) (VACVase) (Biphenyl hydrolase-like protein) (Biphenyl hydrolase-related protein) (Bph-rp) (Breast epithelial mucin-associated antigen) (MCNAA). [Source:Uniprot/SWISSPROT;Acc:Q86WA6] BY ORTHOLOGY TO:ENSORLT00000015962
17.1594 -15.05 0.00876481 1300 6 1 5 [+] picture button
CBG02231 ENSCBRT00000004961 Temporarily Assigned Gene name family member (tag-68) [Source:RefSeq_peptide;Acc:NP_492746]Temporarily Assigned Gene name family member (tag-68) [Source:RefSeq_peptide;Acc:NP_492746] BY ORTHOLOGY TO:F37D6.6
17.146 -20.56 0.00889683 1300 4 2 5 [+] picture button
CBG22998 ENSCBRT00000008830 Y39E4B.10 [Source:RefSeq_peptide;Acc:NP_499716]Y39E4B.10 [Source:RefSeq_peptide;Acc:NP_499716] BY ORTHOLOGY TO:Y39E4B.10
15.6169 -14.67 0.00956359 1300 4 2 4 [+] picture button
CBG20549 ENSCBRT00000000053 F40A3.1 [Source:RefSeq_peptide;Acc:NP_505033]F40A3.1 [Source:RefSeq_peptide;Acc:NP_505033] BY ORTHOLOGY TO:F40A3.1
17.0222 -14.79 0.0102082 1300 3 1 3 [+] picture button
CBG10728 ENSCBRT00000012484 cal-3 encodes a member of the calmodulin family. [Source: WormBase]cal-3 encodes a member of the calmodulin family. [Source: WormBase] BY ORTHOLOGY TO:M02B7.6
16.9901 -19.92 0.0105789 1300 4 1 6 [+] picture button
CBG12293 ENSCBRT00000013334 Putative cuticle collagen 90. [Source:Uniprot/SWISSPROT;Acc:P34340]Putative cuticle collagen 90. [Source:Uniprot/SWISSPROT;Acc:P34340] BY ORTHOLOGY TO:C29E4.1
16.9675 -14.4 0.0108473 1300 6 1 7 [+] picture button
CBG12252 ENSCBRT00000013314 Probable mitochondrial import receptor subunit TOM7 homolog (Translocase of outer membrane 7 kDa subunit homolog). [Source:Uniprot/SWISSPROT;Acc:Q9P0U1]Probable mitochondrial import receptor subunit TOM7 homolog (Translocase of outer membrane 7 kDa subunit homolog). [Source:Uniprot/SWISSPROT;Acc:Q9P0U1] BY ORTHOLOGY TO:ENSXETT00000057380
16.9558 -13.6 0.0109884 1300 3 1 5 [+] picture button
CBG23422 ENSCBRT00000011544 lrx-1 encodes a protein that contains four class A low-density lipoprotein receptor domains. [Source: WormBase]lrx-1 encodes a protein that contains four class A low-density lipoprotein receptor domains. [Source: WormBase] BY ORTHOLOGY TO:T04H1.6
16.8941 -18.58 0.0117665 1300 1 1 1 [+] picture button
CBG21287 ENSCBRT00000000748 C18H7.9 [Source:RefSeq_peptide;Acc:NP_499956]C18H7.9 [Source:RefSeq_peptide;Acc:NP_499956] BY ORTHOLOGY TO:C18H7.9
16.8876 -18.36 0.0118514 1300 2 1 2 [+] picture button
CBG23584 ENSCBRT00000000943 Y39B6A.13 [Source:RefSeq_peptide;Acc:NP_741685]Y39B6A.13 [Source:RefSeq_peptide;Acc:NP_741685] BY ORTHOLOGY TO:Y39B6A.13
16.884 -17.82 0.0118992 1300 2 1 2 [+] picture button
CBG01265 ENSCBRT00000005139 abt-4 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCA subfamily of transport proteins. ABT-4 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of abt-4 activity via RNAi results in no obvious defects, the precise role of abt-4 in C. elegans development and/or behavior is not yet known. abt-4 promoter-gfp fusion proteins are widely expressed in larvae and adults, with expression seen in the pharynx, the pharyngeal-intestinal valve, the intestine, renal gland cells, hypodermis, various neurons, and unidentified cells in the head and tail. [Source: WormBase]abt-4 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCA subfamily of transport proteins. ABT-4 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of abt-4 activity via RNAi results in no obvious defects, the precise role of abt-4 in C. elegans development and/or behavior is not yet known. abt-4 promoter-gfp fusion proteins are widely expressed in larvae and adults, with expression seen in the pharynx, the pharyngeal-intestinal valve, the intestine, renal gland cells, hypodermis, various neurons, and unidentified cells in the head and tail. [Source: WormBase] BY ORTHOLOGY TO:Y39D8C.1
16.884 -25.78 0.0118992 1300 4 1 4 [+] picture button
CBG02722 ENSCBRT00000007416 M02G9.3 [Source:RefSeq_peptide;Acc:NP_496221]M02G9.3 [Source:RefSeq_peptide;Acc:NP_496221] BY ORTHOLOGY TO:M02G9.3
16.884 -14.64 0.0118992 1300 3 1 3 [+] picture button
CBG02031 ENSCBRT00000005891 F53B3.3 [Source:RefSeq_peptide;Acc:NP_508497]F53B3.3 [Source:RefSeq_peptide;Acc:NP_508497] BY ORTHOLOGY TO:F53B3.3
16.884 -23.81 0.0118992 1300 2 2 2 [+] picture button
CBG16572 ENSCBRT00000014572 F37A4.5 [Source:RefSeq_peptide;Acc:NP_498470]F37A4.5 [Source:RefSeq_peptide;Acc:NP_498470] BY ORTHOLOGY TO:F37A4.5
16.8696 -20.84 0.0120906 1300 6 1 5 [+] picture button
CBG08954 ENSCBRT00000007138 T23E1.1 [Source:RefSeq_peptide;Acc:NP_500296]T23E1.1 [Source:RefSeq_peptide;Acc:NP_500296] BY ORTHOLOGY TO:T23E1.1
16.8577 -13.6 0.0122514 1300 2 1 2 [+] picture button
CBG05644 ENSCBRT00000005430 serine/threonine protein kinaseserine/threonine protein kinase BY ORTHOLOGY TO:AAEL011578-RA
16.8529 -11.85 0.012316 1300 8 1 7 [+] picture button
CBG16197 ENSCBRT00000012603 Tetraspanin-12 (Tspan-12) (Transmembrane 4 superfamily member 12) (Tetraspan NET-2). [Source:Uniprot/SWISSPROT;Acc:O95859]Tetraspanin-12 (Tspan-12) (Transmembrane 4 superfamily member 12) (Tetraspan NET-2). [Source:Uniprot/SWISSPROT;Acc:O95859] BY ORTHOLOGY TO:ENSOANT00000019580
16.8011 -17.94 0.0130428 1300 7 1 12 [+] picture button
CBG13937 ENSCBRT00000013634 Mediator complex subunit 20 (Protein trf-proximal) (Protein transcription mediator-related). [Source:Uniprot/SWISSPROT;Acc:P91641]Mediator complex subunit 20 (Protein trf-proximal) (Protein transcription mediator-related). [Source:Uniprot/SWISSPROT;Acc:P91641] BY ORTHOLOGY TO:CG18780-RA
15.0974 -11.55 0.0131048 1300 4 2 3 [+] picture button
CBG15509 ENSCBRT00000010727 CYtochrome P450 family member (cyp-29A3) [Source:RefSeq_peptide;Acc:NP_503130]CYtochrome P450 family member (cyp-29A3) [Source:RefSeq_peptide;Acc:NP_503130] BY ORTHOLOGY TO:Y38C9B.1
16.787 -13.75 0.0132491 1300 5 1 4 [+] picture button
CBG19313 ENSCBRT00000013508 RNA polymerase-associated protein RTF1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q92541]RNA polymerase-associated protein RTF1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q92541] BY ORTHOLOGY TO:ENSMMUT00000021709
16.7278 -16.5 0.0141447 1300 3 1 3 [+] picture button
CBG08494 ENSCBRT00000000261 Regulator of nonsense transcripts 1 (EC 3.6.1.-) (ATP-dependent helicase RENT1) (Nonsense mRNA reducing factor 1) (NORF1) (Up- frameshift suppressor 1 homolog) (hUpf1). [Source:Uniprot/SWISSPROT;Acc:Q92900]Regulator of nonsense transcripts 1 (EC 3.6.1.-) (ATP-dependent helicase RENT1) (Nonsense mRNA reducing factor 1) (NORF1) (Up- frameshift suppressor 1 homolog) (hUpf1). [Source:Uniprot/SWISSPROT;Acc:Q92900] BY ORTHOLOGY TO:ENSOANT00000007239
16.7088 -18.38 0.0144454 1300 3 1 4 [+] picture button

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