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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-252

116 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG05238 ENSCBRT00000003910 F09A5.1 [Source:RefSeq_peptide;Acc:NP_510181]F09A5.1 [Source:RefSeq_peptide;Acc:NP_510181] BY ORTHOLOGY TO:F09A5.1
15.7601 -15.01 0.00169468 1300 4 1 4 [+] picture button
CBG00105 ENSCBRT00000001551 T24D5.2 [Source:RefSeq_peptide;Acc:NP_510104]T24D5.2 [Source:RefSeq_peptide;Acc:NP_510104] BY ORTHOLOGY TO:T24D5.2
17.9839 -23.87 0.00228994 1300 2 1 2 [+] picture button
CBG05062 ENSCBRT00000010247 K10C2.1 [Source:RefSeq_peptide;Acc:NP_509079]K10C2.1 [Source:RefSeq_peptide;Acc:NP_509079] BY ORTHOLOGY TO:K10C2.1
16.0107 -17.31 0.00231661 1300 4 1 3 [+] picture button
CBG17350 ENSCBRT00000001142 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL003441-RA
15.5442 -17.36 0.00248188 1300 5 2 5 [+] picture button
CBG18196 ENSCBRT00000003397 F-box protein 45 [Source:MarkerSymbol;Acc:MGI:2447775]F-box protein 45 [Source:MarkerSymbol;Acc:MGI:2447775] BY ORTHOLOGY TO:ENSRNOT00000002391
17.5347 -16.18 0.00393973 1300 6 1 8 [+] picture button
CBG14781 ENSCBRT00000006752 C46F4.1 [Source:RefSeq_peptide;Acc:NP_508992]C46F4.1 [Source:RefSeq_peptide;Acc:NP_508992] BY ORTHOLOGY TO:C46F4.1
15.8273 -15.82 0.00436913 1300 3 1 3 [+] picture button
CBG15949 ENSCBRT00000014230 Expression experimentally verified by RT-PCR. [Source: WormBase]Expression experimentally verified by RT-PCR. [Source: WormBase] BY ORTHOLOGY TO:B0302.1c
15.2435 -18.8 0.00438001 1300 5 1 5 [+] picture button
CBG05724 ENSCBRT00000009184 Y51H4A.25a [Source:RefSeq_peptide;Acc:NP_001023481]Y51H4A.25a [Source:RefSeq_peptide;Acc:NP_001023481] BY ORTHOLOGY TO:Y51H4A.25a
15.2344 -19.83 0.00473233 1300 2 1 2 [+] picture button
CBG15761 ENSCBRT00000012097 Y37D8A.16 [Source:RefSeq_peptide;Acc:NP_499683]Y37D8A.16 [Source:RefSeq_peptide;Acc:NP_499683] BY ORTHOLOGY TO:Y37D8A.16
15.0919 -16.89 0.005016 1300 2 1 3 [+] picture button
CBG02358 ENSCBRT00000006663 ptr-6 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. PTR-6 is weakly required for normal molting from L4 to adult stages. however, PTR-6 in conjunction with PTR-1 and PTR-10 is strongly required for both molting and viability, with triple ptr-1/-6/-10 RNAi animals showing pronounced molting defects and lethality. PTR-6 is also required for normal growth to full size and locomotion. [Source: WormBase]ptr-6 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. PTR-6 is weakly required for normal molting from L4 to adult stages. however, PTR-6 in conjunction with PTR-1 and PTR-10 is strongly required for both molting and viability, with triple ptr-1/-6/-10 RNAi animals showing pronounced molting defects and lethality. PTR-6 is also required for normal growth to full size and locomotion. [Source: WormBase] BY ORTHOLOGY TO:C54A12.1
15.3375 -12.4 0.00515967 1300 3 2 8 [+] picture button
CBG17520 ENSCBRT00000002071 F59F3.4 [Source:RefSeq_peptide;Acc:NP_509838]F59F3.4 [Source:RefSeq_peptide;Acc:NP_509838] BY ORTHOLOGY TO:F59F3.4
17.2903 -26.23 0.00529012 1300 3 1 4 [+] picture button
CBG03546 ENSCBRT00000006642 Syntaxin 16 CG1467-PA [Source:RefSeq_peptide;Acc:NP_523420]Syntaxin 16 CG1467-PA [Source:RefSeq_peptide;Acc:NP_523420] BY ORTHOLOGY TO:CG1467-RA
15.0494 -20.56 0.00551861 1300 3 1 10 [+] picture button
CBG17919 ENSCBRT00000000460 F48G7.5 [Source:RefSeq_peptide;Acc:NP_503267]F48G7.5 [Source:RefSeq_peptide;Acc:NP_503267] BY ORTHOLOGY TO:F48G7.5
15.1049 -10.76 0.00687499 1300 3 1 3 [+] picture button
CBG12284 ENSCBRT00000013330 Nuclear pore complex protein Nup133 (Nucleoporin Nup133) (133 kDa nucleoporin). [Source:Uniprot/SWISSPROT;Acc:Q8WUM0]Nuclear pore complex protein Nup133 (Nucleoporin Nup133) (133 kDa nucleoporin). [Source:Uniprot/SWISSPROT;Acc:Q8WUM0] BY ORTHOLOGY TO:ENST00000261396
17.067 -18.08 0.00692256 1300 6 1 5 [+] picture button
CBG17990 ENSCBRT00000003029 B0393.4 [Source:RefSeq_peptide;Acc:NP_497981]B0393.4 [Source:RefSeq_peptide;Acc:NP_497981] BY ORTHOLOGY TO:B0393.4
14.9647 -19.88 0.00692717 1300 3 1 3 [+] picture button
CBG01700 ENSCBRT00000005577 RFT1 homolog [Source:RefSeq_peptide;Acc:NP_443091]RFT1 homolog [Source:RefSeq_peptide;Acc:NP_443091] BY ORTHOLOGY TO:ENSOANT00000016563
15.6713 -17.1 0.0074082 1300 2 2 2 [+] picture button
CBG06966 ENSCBRT00000012293 chi-2 encodes a putative chitin synthase, most closely related to chitin synthases characterized in arthropods. [Source: WormBase]chi-2 encodes a putative chitin synthase, most closely related to chitin synthases characterized in arthropods. [Source: WormBase] BY ORTHOLOGY TO:F48A11.1
15.2344 -17.21 0.00742297 1300 5 1 6 [+] picture button
CBG17353 ENSCBRT00000001143 F42E11.2c [Source:RefSeq_peptide;Acc:NP_741904]F42E11.2c [Source:RefSeq_peptide;Acc:NP_741904] BY ORTHOLOGY TO:F42E11.2c
14.9624 -14.35 0.00749801 1300 1 2 1 [+] picture button
CBG13575 ENSCBRT00000007730 Nuclear Hormone Receptor family member (nhr-146) [Source:RefSeq_peptide;Acc:NP_741322]Nuclear Hormone Receptor family member (nhr-146) [Source:RefSeq_peptide;Acc:NP_741322] BY ORTHOLOGY TO:Y41D4B.26
16.981 -27.61 0.00767626 1300 5 2 7 [+] picture button
CBG20083 ENSCBRT00000000650 Serpentine Receptor, class M family member (srm-2) [Source:RefSeq_peptide;Acc:NP_500701]Serpentine Receptor, class M family member (srm-2) [Source:RefSeq_peptide;Acc:NP_500701] BY ORTHOLOGY TO:T28H11.3
14.8991 -13.51 0.00770563 1300 1 2 1 [+] picture button
CBG21027 ENSCBRT00000000709 Y17G7B.20 [Source:RefSeq_peptide;Acc:NP_872051]Y17G7B.20 [Source:RefSeq_peptide;Acc:NP_872051] BY ORTHOLOGY TO:Y17G7B.20
14.983 -21.26 0.00804864 1300 3 1 3 [+] picture button
CBG06079 ENSCBRT00000008455 Temporarily Assigned Gene name family member (tag-89) [Source:RefSeq_peptide;Acc:NP_502147]Temporarily Assigned Gene name family member (tag-89) [Source:RefSeq_peptide;Acc:NP_502147] BY ORTHOLOGY TO:H02I12.3
14.8552 -20.31 0.0084867 1300 4 2 5 [+] picture button
CBG03713 ENSCBRT00000008596 Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). [Source:Uniprot/SWISSPROT;Acc:O95260]Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). [Source:Uniprot/SWISSPROT;Acc:O95260] BY ORTHOLOGY TO:ENSPTRT00000005735
16.8938 -15.94 0.00852475 1300 4 1 4 [+] picture button
CBG09505 ENSCBRT00000005978 nidogennidogen BY ORTHOLOGY TO:AAEL007226-RA
14.8463 -16.22 0.00948236 1300 1 2 1 [+] picture button
CBG20546 ENSCBRT00000000052 tam-1 encodes a broadly expressed nuclear protein with RING finger, B-box, and glutamine/asparagine-rich domains that promotes signalling in the class B synthetic-multivulva gene pathway (which includes the lin-35/RB gene), and also promotes the activity of genes in multicopy transgenic arrays. the normal role of TAM-1's class B activity is presumably to inhibit RAS pathway activity in vulval development, while TAM-1's effect on transgenes may be through changes in the acetylation state of histones in chromatin. [Source: WormBase]tam-1 encodes a broadly expressed nuclear protein with RING finger, B-box, and glutamine/asparagine-rich domains that promotes signalling in the class B synthetic-multivulva gene pathway (which includes the lin-35/RB gene), and also promotes the activity of genes in multicopy transgenic arrays. the normal role of TAM-1's class B activity is presumably to inhibit RAS pathway activity in vulval development, while TAM-1's effect on transgenes may be through changes in the acetylation state of histones in chromatin. [Source: WormBase] BY ORTHOLOGY TO:F26G5.9
14.8452 -15.28 0.00955649 1300 1 1 1 [+] picture button
CBG09981 ENSCBRT00000008132 ZK632.11 [Source:RefSeq_peptide;Acc:NP_499182]ZK632.11 [Source:RefSeq_peptide;Acc:NP_499182] BY ORTHOLOGY TO:ZK632.11
16.7855 -26.25 0.00970801 1300 3 1 3 [+] picture button
CBG09113 ENSCBRT00000008531 Dual specificity protein phosphatase 22 (EC 3.1.3.48) (EC 3.1.3.16) (JNK-stimulatory phosphatase-1) (JSP-1) (Mitogen-activated protein kinase phosphatase x) (LMW-DSP2). [Source:Uniprot/SWISSPROT;Acc:Q9NRW4]Dual specificity protein phosphatase 22 (EC 3.1.3.48) (EC 3.1.3.16) (JNK-stimulatory phosphatase-1) (JSP-1) (Mitogen-activated protein kinase phosphatase x) (LMW-DSP2). [Source:Uniprot/SWISSPROT;Acc:Q9NRW4] BY ORTHOLOGY TO:ENSGALT00000020924
16.7173 -19.12 0.0105351 1300 2 1 3 [+] picture button
CBG01593 ENSCBRT00000005493 F35H10.10 [Source:RefSeq_peptide;Acc:NP_501400]F35H10.10 [Source:RefSeq_peptide;Acc:NP_501400] BY ORTHOLOGY TO:F35H10.10
15.1482 -13.53 0.0111601 1300 4 2 5 [+] picture button
CBG08708 ENSCBRT00000005278 C49G9.1 [Source:RefSeq_peptide;Acc:NP_493186]C49G9.1 [Source:RefSeq_peptide;Acc:NP_493186] BY ORTHOLOGY TO:C49G9.1
16.5082 -21.07 0.0135315 1300 4 1 4 [+] picture button
CBG07789 ENSCBRT00000010748 F02C12.1 [Source:RefSeq_peptide;Acc:NP_510230]F02C12.1 [Source:RefSeq_peptide;Acc:NP_510230] BY ORTHOLOGY TO:F02C12.1
16.4214 -26.21 0.0150102 1300 1 1 1 [+] picture button
CBG19123 ENSCBRT00000013877 twk-11 encodes one of more than 40 TWK (two-P domain K+) potassium channels in C. elegans that contain two pore regions and four transmembrane domains. orthologous to C. briggsae CBG19123 with some similarity to Drosophila CG6004. [Source: WormBase]twk-11 encodes one of more than 40 TWK (two-P domain K+) potassium channels in C. elegans that contain two pore regions and four transmembrane domains. orthologous to C. briggsae CBG19123 with some similarity to Drosophila CG6004. [Source: WormBase] BY ORTHOLOGY TO:F20A1.7a
16.3988 -22.41 0.0154197 1300 3 1 6 [+] picture button
CBG18749 ENSCBRT00000014528 R05A10.1 [Source:RefSeq_peptide;Acc:NP_502721]R05A10.1 [Source:RefSeq_peptide;Acc:NP_502721] BY ORTHOLOGY TO:R05A10.1
16.3859 -17.99 0.0156587 1300 1 1 1 [+] picture button
CBG21689 ENSCBRT00000004594 Uncharacterized protein C18orf58. [Source:Uniprot/SPTREMBL;Acc:Q8NAR6]Uncharacterized protein C18orf58. [Source:Uniprot/SPTREMBL;Acc:Q8NAR6] BY ORTHOLOGY TO:ENSOANT00000030399
16.3451 -18.66 0.0164401 1300 5 1 3 [+] picture button
CBG16011 ENSCBRT00000014257 T09B9.3 [Source:RefSeq_peptide;Acc:NP_509638]T09B9.3 [Source:RefSeq_peptide;Acc:NP_509638] BY ORTHOLOGY TO:T09B9.3
16.3177 -23.83 0.0169849 1300 3 1 4 [+] picture button
CBG02459 ENSCBRT00000006523 Coiled-coil domain-containing protein 53. [Source:Uniprot/SWISSPROT;Acc:Q9Y3C0]Coiled-coil domain-containing protein 53. [Source:Uniprot/SWISSPROT;Acc:Q9Y3C0] BY ORTHOLOGY TO:ENSGACT00000026295
16.2794 -24.38 0.0177774 1300 2 1 2 [+] picture button
CBG20456 ENSCBRT00000003315 Cysteine dioxygenase type 1 (EC 1.13.11.20) (Cysteine dioxygenase type I) (CDO) (CDO-I). [Source:Uniprot/SWISSPROT;Acc:P21816]Cysteine dioxygenase type 1 (EC 1.13.11.20) (Cysteine dioxygenase type I) (CDO) (CDO-I). [Source:Uniprot/SWISSPROT;Acc:P21816] BY ORTHOLOGY TO:ENSRNOT00000000172
16.2673 -22.39 0.0180351 1300 1 1 1 [+] picture button
CBG05704 ENSCBRT00000009198 dual specificity protein phosphatase 7, putativedual specificity protein phosphatase 7, putative BY ORTHOLOGY TO:AAEL001145-RA
16.2292 -14.22 0.0188716 1300 2 2 2 [+] picture button
CBG18552 ENSCBRT00000010673 ZC123.4c [Source:RefSeq_peptide;Acc:NP_001021842]ZC123.4c [Source:RefSeq_peptide;Acc:NP_001021842] BY ORTHOLOGY TO:ZC123.4b
16.2237 -11.57 0.0189939 1300 5 1 9 [+] picture button
CBG16607 ENSCBRT00000014545 RNP (RRM RNA binding domain) containing family member (rnp-7) [Source:RefSeq_peptide;Acc:NP_498565]RNP (RRM RNA binding domain) containing family member (rnp-7) [Source:RefSeq_peptide;Acc:NP_498565] BY ORTHOLOGY TO:K04G7.10
16.2048 -17.72 0.0194271 1300 3 1 3 [+] picture button
CBG02114 ENSCBRT00000004190 myotrophin [Source:RefSeq_peptide;Acc:NP_998137]myotrophin [Source:RefSeq_peptide;Acc:NP_998137] BY ORTHOLOGY TO:ENSDART00000077942
16.2048 -24.66 0.0194271 1300 4 1 6 [+] picture button
CBG00864 ENSCBRT00000003967 growth arrest specific 1 [Source:MarkerSymbol;Acc:MGI:95655]growth arrest specific 1 [Source:MarkerSymbol;Acc:MGI:95655] BY ORTHOLOGY TO:ENSMUST00000065086
16.1804 -15.31 0.0199967 1300 6 1 9 [+] picture button
CBG01016 ENSCBRT00000002129 Y51B9A.4 [Source:RefSeq_peptide;Acc:NP_496008]Y51B9A.4 [Source:RefSeq_peptide;Acc:NP_496008] BY ORTHOLOGY TO:Y51B9A.4
16.168 -23.96 0.0202938 1300 1 1 1 [+] picture button
CBG19122 ENSCBRT00000013882 Probable 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase) (Phosphohexokinase). [Source:Uniprot/SWISSPROT;Acc:Q27483]Probable 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase) (Phosphohexokinase). [Source:Uniprot/SWISSPROT;Acc:Q27483] BY ORTHOLOGY TO:C50F4.2
16.14 -18.59 0.02098 1300 3 1 4 [+] picture button
CBG12302 ENSCBRT00000013339 R10E4.3 [Source:RefSeq_peptide;Acc:NP_497857]R10E4.3 [Source:RefSeq_peptide;Acc:NP_497857] BY ORTHOLOGY TO:R10E4.3
16.136 -18.65 0.0210786 1300 5 1 6 [+] picture button
CBG07755 ENSCBRT00000010717 F59D12.2 [Source:RefSeq_peptide;Acc:NP_510581]F59D12.2 [Source:RefSeq_peptide;Acc:NP_510581] BY ORTHOLOGY TO:F59D12.2
16.1271 -21.42 0.0213024 1300 6 1 5 [+] picture button
CBG24185 ENSCBRT00000004377 K02F3.8 [Source:RefSeq_peptide;Acc:NP_497271]K02F3.8 [Source:RefSeq_peptide;Acc:NP_497271] BY ORTHOLOGY TO:K02F3.8
16.1234 -24.7 0.021395 1300 5 1 4 [+] picture button
CBG15974 ENSCBRT00000014234 F35B3.4 [Source:RefSeq_peptide;Acc:NP_510750]F35B3.4 [Source:RefSeq_peptide;Acc:NP_510750] BY ORTHOLOGY TO:F35B3.4
16.1174 -14.09 0.0215495 1300 4 1 4 [+] picture button
CBG03127 ENSCBRT00000006944 F22B3.8 [Source:RefSeq_peptide;Acc:NP_502160]F22B3.8 [Source:RefSeq_peptide;Acc:NP_502160] BY ORTHOLOGY TO:F22B3.8
16.1127 -14.17 0.0216704 1300 4 1 4 [+] picture button
CBG11070 ENSCBRT00000012281 Serpentine receptor class epsilon-13 (Protein sre-13). [Source:Uniprot/SWISSPROT;Acc:O45300]Serpentine receptor class epsilon-13 (Protein sre-13). [Source:Uniprot/SWISSPROT;Acc:O45300] BY ORTHOLOGY TO:C38C6.4
16.1077 -16.55 0.0217974 1300 1 1 2 [+] picture button
CBG12000 ENSCBRT00000011733 Islet cell autoantigen 1 (69 kDa islet cell autoantigen) (ICA69) (p69) (Islet cell autoantigen p69) (ICAp69). [Source:Uniprot/SWISSPROT;Acc:Q05084]Islet cell autoantigen 1 (69 kDa islet cell autoantigen) (ICA69) (p69) (Islet cell autoantigen p69) (ICAp69). [Source:Uniprot/SWISSPROT;Acc:Q05084] BY ORTHOLOGY TO:ENSORLT00000020733
16.0921 -18.68 0.022206 1300 3 1 4 [+] picture button

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