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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-251

121 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG17520 ENSCBRT00000002071 F59F3.4 [Source:RefSeq_peptide;Acc:NP_509838]F59F3.4 [Source:RefSeq_peptide;Acc:NP_509838] BY ORTHOLOGY TO:F59F3.4
21.7657 -44.33 1.42895e-05 1300 3 1 4 [+] picture button
CBG17350 ENSCBRT00000001142 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL003441-RA
15.2867 -15.32 0.000561317 1300 5 2 5 [+] picture button
CBG23226 ENSCBRT00000012190 C55A6.1 [Source:RefSeq_peptide;Acc:NP_505917]C55A6.1 [Source:RefSeq_peptide;Acc:NP_505917] BY ORTHOLOGY TO:C55A6.1
15.2391 -12.45 0.00169228 1300 2 1 2 [+] picture button
CBG12432 ENSCBRT00000013170 F56D5.2 [Source:RefSeq_peptide;Acc:NP_501656]F56D5.2 [Source:RefSeq_peptide;Acc:NP_501656] BY ORTHOLOGY TO:F56D5.2
15.4835 -18.67 0.0018819 1300 5 1 5 [+] picture button
CBG08310 ENSCBRT00000012976 ZC416.1 [Source:RefSeq_peptide;Acc:NP_500389]ZC416.1 [Source:RefSeq_peptide;Acc:NP_500389] BY ORTHOLOGY TO:ZC416.1
15.1718 -12.84 0.00245593 1300 4 1 3 [+] picture button
CBG03813 ENSCBRT00000008663 ceh-5 encodes a homeodomain protein, similar to the human VENTRAL ANTERIOR HOMEO BOX 2 gene (VAX2. OMIM:604295). CEH-5 is dispensable for viability and gross morphology. [Source: WormBase]ceh-5 encodes a homeodomain protein, similar to the human VENTRAL ANTERIOR HOMEO BOX 2 gene (VAX2. OMIM:604295). CEH-5 is dispensable for viability and gross morphology. [Source: WormBase] BY ORTHOLOGY TO:C16C2.1
15.2037 -12.69 0.00288525 1300 4 1 3 [+] picture button
CBG04486 ENSCBRT00000008824 G protein-coupled receptor kinase-interactor 2 [Source:RefSeq_peptide;Acc:NP_001005553]G protein-coupled receptor kinase-interactor 2 [Source:RefSeq_peptide;Acc:NP_001005553] BY ORTHOLOGY TO:ENSRNOT00000045946
15.1313 -10.13 0.00427307 1300 4 1 3 [+] picture button
CBG03379 ENSCBRT00000007140 T26C12.2 [Source:RefSeq_peptide;Acc:NP_500307]T26C12.2 [Source:RefSeq_peptide;Acc:NP_500307] BY ORTHOLOGY TO:T26C12.2
15.2959 -16.94 0.00455628 1300 5 1 6 [+] picture button
CBG07246 ENSCBRT00000011850 lethal (3) 70Da CG6760-PA [Source:RefSeq_peptide;Acc:NP_652016]lethal (3) 70Da CG6760-PA [Source:RefSeq_peptide;Acc:NP_652016] BY ORTHOLOGY TO:CG6760-RA
17.1096 -23.12 0.0046606 1300 4 1 4 [+] picture button
CBG05664 ENSCBRT00000005422 pgp-9 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. PGP-9 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, and loss of pgp-9 activity via RNAi can result in embryonic lethality. pgp-9 promoter-gfp fusion proteins are expressed in the pharynx (first and second bulbs) and in the intestine. [Source: WormBase]pgp-9 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. PGP-9 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, and loss of pgp-9 activity via RNAi can result in embryonic lethality. pgp-9 promoter-gfp fusion proteins are expressed in the pharynx (first and second bulbs) and in the intestine. [Source: WormBase] BY ORTHOLOGY TO:C47A10.1
14.9966 -16.11 0.00467371 1300 7 2 7 [+] picture button
CBG18506 ENSCBRT00000000954 Serpentine Receptor, class U family member (sru-7) [Source:RefSeq_peptide;Acc:NP_501450]Serpentine Receptor, class U family member (sru-7) [Source:RefSeq_peptide;Acc:NP_501450] BY ORTHOLOGY TO:C28C12.13
14.8869 -20.96 0.0047808 1300 5 1 5 [+] picture button
CBG01593 ENSCBRT00000005493 F35H10.10 [Source:RefSeq_peptide;Acc:NP_501400]F35H10.10 [Source:RefSeq_peptide;Acc:NP_501400] BY ORTHOLOGY TO:F35H10.10
15.0855 -13.31 0.00563063 1300 4 2 5 [+] picture button
CBG18529 ENSCBRT00000001753 B0507.7 [Source:RefSeq_peptide;Acc:NP_505256]B0507.7 [Source:RefSeq_peptide;Acc:NP_505256] BY ORTHOLOGY TO:B0507.7
16.7894 -21.74 0.00692554 1300 5 2 5 [+] picture button
CBG06087 ENSCBRT00000008447 MAGI (Membrane Associated Guanylate kinase Inverted) homolog family member (magi-1) [Source:RefSeq_peptide;Acc:NP_502219]MAGI (Membrane Associated Guanylate kinase Inverted) homolog family member (magi-1) [Source:RefSeq_peptide;Acc:NP_502219] BY ORTHOLOGY TO:K01A6.2
14.7202 -9.33 0.00700705 1300 6 1 9 [+] picture button
CBG15761 ENSCBRT00000012097 Y37D8A.16 [Source:RefSeq_peptide;Acc:NP_499683]Y37D8A.16 [Source:RefSeq_peptide;Acc:NP_499683] BY ORTHOLOGY TO:Y37D8A.16
14.7388 -13.22 0.00703822 1300 2 1 3 [+] picture button
CBG16669 ENSCBRT00000014701 C50C3.5 [Source:RefSeq_peptide;Acc:NP_498786]C50C3.5 [Source:RefSeq_peptide;Acc:NP_498786] BY ORTHOLOGY TO:C50C3.5
14.7184 -14.66 0.0073654 1300 1 1 1 [+] picture button
ENSCBRT00000000705 Y17G7B.1 [Source:RefSeq_peptide;Acc:NP_496552]Y17G7B.1 [Source:RefSeq_peptide;Acc:NP_496552] BY ORTHOLOGY TO:Y17G7B.1
16.716 -17.19 0.00758193 1300 6 1 6 [+] picture button
CBG10950 ENSCBRT00000001242 UDP-GlucuronosylTransferase family member (ugt-57) [Source:RefSeq_peptide;Acc:NP_509182]UDP-GlucuronosylTransferase family member (ugt-57) [Source:RefSeq_peptide;Acc:NP_509182] BY ORTHOLOGY TO:F01E11.1
16.7107 -20.42 0.00763233 1300 3 1 5 [+] picture button
CBG20945 ENSCBRT00000000617 Serpentine Receptor, class E (epsilon) family member (sre-51) [Source:RefSeq_peptide;Acc:NP_496614]Serpentine Receptor, class E (epsilon) family member (sre-51) [Source:RefSeq_peptide;Acc:NP_496614] BY ORTHOLOGY TO:C50E10.10
16.6632 -14.58 0.00809266 1300 5 1 5 [+] picture button
CBG12780 ENSCBRT00000013700 B0511.11 [Source:RefSeq_peptide;Acc:NP_492788]B0511.11 [Source:RefSeq_peptide;Acc:NP_492788] BY ORTHOLOGY TO:B0511.11
16.6595 -16.7 0.00813037 1300 6 1 5 [+] picture button
CBG00346 ENSCBRT00000002035 gcy-25 encodes a predicted guanylate cyclase. [Source: WormBase]gcy-25 encodes a predicted guanylate cyclase. [Source: WormBase] BY ORTHOLOGY TO:Y105C5B.2
14.6493 -10.73 0.00822718 1300 5 1 9 [+] picture button
CBG19979 ENSCBRT00000002433 C02B10.2 [Source:RefSeq_peptide;Acc:NP_500721]C02B10.2 [Source:RefSeq_peptide;Acc:NP_500721] BY ORTHOLOGY TO:C02B10.2
14.7057 -12.8 0.00842675 1300 5 2 7 [+] picture button
CBG03422 ENSCBRT00000007183 Protein Wnt-5a precursor. [Source:Uniprot/SWISSPROT;Acc:P41221]Protein Wnt-5a precursor. [Source:Uniprot/SWISSPROT;Acc:P41221] BY ORTHOLOGY TO:ENSGACT00000026036
14.8819 -10.82 0.00908712 1300 4 2 5 [+] picture button
CBG06070 ENSCBRT00000008481 Protein LRP16. [Source:Uniprot/SWISSPROT;Acc:Q9BQ69]Protein LRP16. [Source:Uniprot/SWISSPROT;Acc:Q9BQ69] BY ORTHOLOGY TO:ENST00000255681
16.5247 -18.15 0.00960036 1300 7 1 11 [+] picture button
CBG07396 ENSCBRT00000011829 C04A11.1 [Source:RefSeq_peptide;Acc:NP_510288]C04A11.1 [Source:RefSeq_peptide;Acc:NP_510288] BY ORTHOLOGY TO:C04A11.1
14.6094 -11.81 0.0102344 1300 3 2 3 [+] picture button
CBG14396 ENSCBRT00000002790 F14H12.3 [Source:RefSeq_peptide;Acc:NP_508745]F14H12.3 [Source:RefSeq_peptide;Acc:NP_508745] BY ORTHOLOGY TO:F14H12.3
16.2444 -15.81 0.0135498 1300 1 1 1 [+] picture button
CBG10411 ENSCBRT00000007912 R08F11.7 [Source:RefSeq_peptide;Acc:NP_504048]R08F11.7 [Source:RefSeq_peptide;Acc:NP_504048] BY ORTHOLOGY TO:R08F11.7
16.2444 -29.48 0.0135498 1300 4 1 3 [+] picture button
CBG07390 ENSCBRT00000011828 C04A11.2 [Source:RefSeq_peptide;Acc:NP_510289]C04A11.2 [Source:RefSeq_peptide;Acc:NP_510289] BY ORTHOLOGY TO:C04A11.2
16.2024 -20.69 0.0142661 1300 6 1 8 [+] picture button
CBG14900 ENSCBRT00000004498 F46F11.7 [Source:RefSeq_peptide;Acc:NP_491646]F46F11.7 [Source:RefSeq_peptide;Acc:NP_491646] BY ORTHOLOGY TO:F46F11.7
16.1381 -14.46 0.015436 1300 2 1 2 [+] picture button
CBG15142 ENSCBRT00000010331 Polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide phosphorylase-like protein) (PNPase old-35) (3'-5' RNA exonuclease OLD35). [Source:Uniprot/SWISSPROT;Acc:Q8TCS8]Polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide phosphorylase-like protein) (PNPase old-35) (3'-5' RNA exonuclease OLD35). [Source:Uniprot/SWISSPROT;Acc:Q8TCS8] BY ORTHOLOGY TO:SINFRUT00000129340
16.1025 -17.46 0.0161238 1300 3 1 3 [+] picture button
CBG14390 ENSCBRT00000002788 C52B9.8 [Source:RefSeq_peptide;Acc:NP_508736]C52B9.8 [Source:RefSeq_peptide;Acc:NP_508736] BY ORTHOLOGY TO:C52B9.8
16.0876 -19.76 0.0164206 1300 1 1 1 [+] picture button
CBG03259 ENSCBRT00000006808 T24B8.5 [Source:RefSeq_peptide;Acc:NP_495937]T24B8.5 [Source:RefSeq_peptide;Acc:NP_495937] BY ORTHOLOGY TO:T24B8.5
16.0631 -23.32 0.0169196 1300 2 1 3 [+] picture button
CBG16011 ENSCBRT00000014257 T09B9.3 [Source:RefSeq_peptide;Acc:NP_509638]T09B9.3 [Source:RefSeq_peptide;Acc:NP_509638] BY ORTHOLOGY TO:T09B9.3
16.0571 -25.22 0.0170453 1300 3 1 4 [+] picture button
CBG20804 ENSCBRT00000001318 Y48C3A.4 [Source:RefSeq_peptide;Acc:NP_496811]Y48C3A.4 [Source:RefSeq_peptide;Acc:NP_496811] BY ORTHOLOGY TO:Y48C3A.4
16.018 -18.07 0.0178792 1300 2 1 4 [+] picture button
CBG19168 ENSCBRT00000013371 CYtochrome P450 family member (cyp-33B1) [Source:RefSeq_peptide;Acc:NP_505342]CYtochrome P450 family member (cyp-33B1) [Source:RefSeq_peptide;Acc:NP_505342] BY ORTHOLOGY TO:C25E10.2
15.9821 -17.67 0.0186797 1300 2 1 2 [+] picture button
CBG24031 ENSCBRT00000003661 F25E2.2 [Source:RefSeq_peptide;Acc:NP_508158]F25E2.2 [Source:RefSeq_peptide;Acc:NP_508158] BY ORTHOLOGY TO:F25E2.2
15.976 -21.51 0.018819 1300 3 1 3 [+] picture button
CBG08421 ENSCBRT00000012893 Serpentine Receptor, class X family member (srx-13) [Source:RefSeq_peptide;Acc:NP_500040]Serpentine Receptor, class X family member (srx-13) [Source:RefSeq_peptide;Acc:NP_500040] BY ORTHOLOGY TO:C44B12.4
15.9544 -25.27 0.0193233 1300 3 1 4 [+] picture button
CBG02790 ENSCBRT00000006147 C14A4.8 [Source:RefSeq_peptide;Acc:NP_496287]C14A4.8 [Source:RefSeq_peptide;Acc:NP_496287] BY ORTHOLOGY TO:C14A4.8
15.9448 -17.08 0.0195488 1300 1 1 2 [+] picture button
ENSCBRT00000003402 Protein set-2. [Source:Uniprot/SWISSPROT;Acc:Q18221]Protein set-2. [Source:Uniprot/SWISSPROT;Acc:Q18221] BY ORTHOLOGY TO:C26E6.9a
15.9362 -22.74 0.0197555 1300 3 1 3 [+] picture button
CBG09678 ENSCBRT00000005772 Protein PHosphatase family member (pph-1) [Source:RefSeq_peptide;Acc:NP_505734]Protein PHosphatase family member (pph-1) [Source:RefSeq_peptide;Acc:NP_505734] BY ORTHOLOGY TO:C05A2.1
15.9161 -32.84 0.0202465 1300 4 2 4 [+] picture button
CBG13909 ENSCBRT00000013649 CG32344-PA [Source:RefSeq_peptide;Acc:NP_612028]CG32344-PA [Source:RefSeq_peptide;Acc:NP_612028] BY ORTHOLOGY TO:CG32344-RA
15.8713 -16.75 0.0213805 1300 8 1 6 [+] picture button
CBG14606 ENSCBRT00000003274 Pantothenate kinase 3 (EC 2.7.1.33) (Pantothenic acid kinase 3) (hPanK3). [Source:Uniprot/SWISSPROT;Acc:Q9H999]Pantothenate kinase 3 (EC 2.7.1.33) (Pantothenic acid kinase 3) (hPanK3). [Source:Uniprot/SWISSPROT;Acc:Q9H999] BY ORTHOLOGY TO:ENSORLT00000022780
15.8482 -15.91 0.0219906 1300 4 1 5 [+] picture button
CBG08053 ENSCBRT00000003457 Putative neuropeptide Y receptor (NPY-R). [Source:Uniprot/SWISSPROT;Acc:Q18179]Putative neuropeptide Y receptor (NPY-R). [Source:Uniprot/SWISSPROT;Acc:Q18179] BY ORTHOLOGY TO:C25G6.5
15.8482 -18.88 0.0219906 1300 8 1 8 [+] picture button
CBG06591 ENSCBRT00000009608 F52F10.2 [Source:RefSeq_peptide;Acc:NP_503443]F52F10.2 [Source:RefSeq_peptide;Acc:NP_503443] BY ORTHOLOGY TO:F52F10.2
15.7824 -21.07 0.023822 1300 4 1 14 [+] picture button
CBG19753 ENSCBRT00000000353 ptr-23 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-23 is strongly required for normal molting from L4 to adult stages (a role conserved in C. briggsae). PTR-23 is also required for normal male tail development, vulval morphogenesis, adult alae formation, and (partly) for endocytosis of yolk by oocytes. [Source: WormBase]ptr-23 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-23 is strongly required for normal molting from L4 to adult stages (a role conserved in C. briggsae). PTR-23 is also required for normal male tail development, vulval morphogenesis, adult alae formation, and (partly) for endocytosis of yolk by oocytes. [Source: WormBase] BY ORTHOLOGY TO:ZK270.1
15.7516 -18.33 0.0247282 1300 3 1 4 [+] picture button
CBG18552 ENSCBRT00000010673 ZC123.4c [Source:RefSeq_peptide;Acc:NP_001021842]ZC123.4c [Source:RefSeq_peptide;Acc:NP_001021842] BY ORTHOLOGY TO:ZC123.4b
15.7381 -13.54 0.0251373 1300 5 1 9 [+] picture button
CBG12000 ENSCBRT00000011733 Islet cell autoantigen 1 (69 kDa islet cell autoantigen) (ICA69) (p69) (Islet cell autoantigen p69) (ICAp69). [Source:Uniprot/SWISSPROT;Acc:Q05084]Islet cell autoantigen 1 (69 kDa islet cell autoantigen) (ICA69) (p69) (Islet cell autoantigen p69) (ICAp69). [Source:Uniprot/SWISSPROT;Acc:Q05084] BY ORTHOLOGY TO:ENSORLT00000020733
15.7342 -22.94 0.0252573 1300 3 1 4 [+] picture button
CBG07757 ENSCBRT00000010721 C03H12.1 [Source:RefSeq_peptide;Acc:NP_510583]C03H12.1 [Source:RefSeq_peptide;Acc:NP_510583] BY ORTHOLOGY TO:C03H12.1
15.7268 -18.9 0.025485 1300 3 1 3 [+] picture button
CBG17584 ENSCBRT00000002126 F31B12.2 [Source:RefSeq_peptide;Acc:NP_509807]F31B12.2 [Source:RefSeq_peptide;Acc:NP_509807] BY ORTHOLOGY TO:F31B12.2
15.7169 -21.5 0.0257899 1300 3 1 4 [+] picture button
CBG18196 ENSCBRT00000003397 F-box protein 45 [Source:MarkerSymbol;Acc:MGI:2447775]F-box protein 45 [Source:MarkerSymbol;Acc:MGI:2447775] BY ORTHOLOGY TO:ENSRNOT00000002391
15.6965 -17.12 0.0264356 1300 6 1 8 [+] picture button

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Download table: GFF TXT
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