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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-242

165 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG16728 ENSCBRT00000012807 F08C6.5 [Source:RefSeq_peptide;Acc:NP_509280]F08C6.5 [Source:RefSeq_peptide;Acc:NP_509280] BY ORTHOLOGY TO:F08C6.5
15.3456 -16.67 0.00100366 1300 5 2 5 [+] picture button
CBG01815 ENSCBRT00000002883 Zinc metalloproteinase nas-14 precursor (EC 3.4.24.21) (Nematode astacin 14). [Source:Uniprot/SWISSPROT;Acc:Q19269]Zinc metalloproteinase nas-14 precursor (EC 3.4.24.21) (Nematode astacin 14). [Source:Uniprot/SWISSPROT;Acc:Q19269] BY ORTHOLOGY TO:F09E8.6
14.9978 -19.46 0.00145379 1300 2 1 2 [+] picture button
CBG00962 ENSCBRT00000002270 Era (G-protein)-like 1 [Source:RefSeq_peptide;Acc:NP_001013247]Era (G-protein)-like 1 [Source:RefSeq_peptide;Acc:NP_001013247] BY ORTHOLOGY TO:ENSRNOT00000014386
15.2344 -24.08 0.00147963 1300 4 1 3 [+] picture button
CBG04056 ENSCBRT00000009894 F08B6.1 [Source:RefSeq_peptide;Acc:NP_491937]F08B6.1 [Source:RefSeq_peptide;Acc:NP_491937] BY ORTHOLOGY TO:F08B6.1
15.468 -19.51 0.00148461 1300 1 2 1 [+] picture button
CBG03849 ENSCBRT00000008688 Zinc metalloproteinase nas-5 precursor (EC 3.4.24.21) (Nematode astacin 5). [Source:Uniprot/SWISSPROT;Acc:P91828]Zinc metalloproteinase nas-5 precursor (EC 3.4.24.21) (Nematode astacin 5). [Source:Uniprot/SWISSPROT;Acc:P91828] BY ORTHOLOGY TO:T23H4.3
14.8432 -18.33 0.00215552 1300 6 1 5 [+] picture button
CBG24496 ENSCBRT00000011175 Alpha-1-syntrophin (59 kDa dystrophin-associated protein A1 acidic component 1) (Pro-TGF-alpha cytoplasmic domain-interacting protein 1) (TACIP1) (Syntrophin 1). [Source:Uniprot/SWISSPROT;Acc:Q13424]Alpha-1-syntrophin (59 kDa dystrophin-associated protein A1 acidic component 1) (Pro-TGF-alpha cytoplasmic domain-interacting protein 1) (TACIP1) (Syntrophin 1). [Source:Uniprot/SWISSPROT;Acc:Q13424] BY ORTHOLOGY TO:ENSMODT00000003787
14.4989 -15.58 0.00224667 1300 6 1 5 [+] picture button
CBG00604 ENSCBRT00000003335 F56C9.8 [Source:RefSeq_peptide;Acc:NP_498613]F56C9.8 [Source:RefSeq_peptide;Acc:NP_498613] BY ORTHOLOGY TO:F56C9.8
17.3478 -22.56 0.00253682 1300 4 1 4 [+] picture button
CBG06467 ENSCBRT00000010959 Serpentine Receptor, class W family member (srw-4) [Source:RefSeq_peptide;Acc:NP_503785]Serpentine Receptor, class W family member (srw-4) [Source:RefSeq_peptide;Acc:NP_503785] BY ORTHOLOGY TO:F37B4.8
14.715 -18.1 0.00273221 1300 6 1 5 [+] picture button
CBG24376 ENSCBRT00000009357 ZK896.6 [Source:RefSeq_peptide;Acc:NP_502451]ZK896.6 [Source:RefSeq_peptide;Acc:NP_502451] BY ORTHOLOGY TO:ZK896.6
14.6948 -19.54 0.0027861 1300 4 1 3 [+] picture button
ENSCBRT00000001996 F56F4.2 [Source:RefSeq_peptide;Acc:NP_491772]F56F4.2 [Source:RefSeq_peptide;Acc:NP_491772] BY ORTHOLOGY TO:F56F4.2
17.2605 -19.38 0.00280863 1300 8 2 11 [+] picture button
CBG10723 ENSCBRT00000012480 W03B1.8 [Source:RefSeq_peptide;Acc:NP_500546]W03B1.8 [Source:RefSeq_peptide;Acc:NP_500546] BY ORTHOLOGY TO:W03B1.8
14.7743 -15.13 0.00293161 1300 11 2 12 [+] picture button
CBG13276 ENSCBRT00000001062 Y66D12A.24 [Source:RefSeq_peptide;Acc:NP_499479]Y66D12A.24 [Source:RefSeq_peptide;Acc:NP_499479] BY ORTHOLOGY TO:Y66D12A.24
14.7116 -14.5 0.00301444 1300 4 2 4 [+] picture button
CBG12561 ENSCBRT00000014304 C39H7.1 [Source:RefSeq_peptide;Acc:NP_500837]C39H7.1 [Source:RefSeq_peptide;Acc:NP_500837] BY ORTHOLOGY TO:C39H7.1
14.6501 -23.18 0.00328927 1300 2 1 2 [+] picture button
CBG23534 ENSCBRT00000011617 E02A10.3 [Source:RefSeq_peptide;Acc:NP_506147]E02A10.3 [Source:RefSeq_peptide;Acc:NP_506147] BY ORTHOLOGY TO:E02A10.3
14.3998 -17.91 0.00345766 1300 4 1 4 [+] picture button
CBG08495 ENSCBRT00000000262 ATP-binding cassette sub-family B member 8, mitochondrial precursor (Mitochondrial ATP-binding cassette 1) (M-ABC1). [Source:Uniprot/SWISSPROT;Acc:Q9NUT2]ATP-binding cassette sub-family B member 8, mitochondrial precursor (Mitochondrial ATP-binding cassette 1) (M-ABC1). [Source:Uniprot/SWISSPROT;Acc:Q9NUT2] BY ORTHOLOGY TO:ENSMMUT00000028769
15.6176 -20.72 0.00368071 1300 7 1 7 [+] picture button
CBG19860 ENSCBRT00000002417 C31H1.6a [Source:RefSeq_peptide;Acc:NP_500866]C31H1.6a [Source:RefSeq_peptide;Acc:NP_500866] BY ORTHOLOGY TO:C31H1.6a
14.402 -16.95 0.00425346 1300 4 1 2 [+] picture button
CBG23698 ENSCBRT00000004144 nhr-65 encodes a protein with similarity to members of the nuclear hormone receptor superfamily. although nhr-65 is not predicted to encode a complete DNA-binding domain, it is expressed, based on mRNA analysis cgc3416. [Source: WormBase]nhr-65 encodes a protein with similarity to members of the nuclear hormone receptor superfamily. although nhr-65 is not predicted to encode a complete DNA-binding domain, it is expressed, based on mRNA analysis cgc3416. [Source: WormBase] BY ORTHOLOGY TO:Y17D7A.3a
15.2213 -10.26 0.00431828 1300 8 1 12 [+] picture button
CBG04603 ENSCBRT00000010493 F08H9.5 [Source:RefSeq_peptide;Acc:NP_506588]F08H9.5 [Source:RefSeq_peptide;Acc:NP_506588] BY ORTHOLOGY TO:F08H9.5
14.2932 -15.37 0.00435288 1300 6 1 5 [+] picture button
CBG06660 ENSCBRT00000009676 Seven TM Receptor family member (str-113) [Source:RefSeq_peptide;Acc:NP_504025]Seven TM Receptor family member (str-113) [Source:RefSeq_peptide;Acc:NP_504025] BY ORTHOLOGY TO:Y39H10B.1
14.3911 -13.16 0.00435288 1300 3 1 2 [+] picture button
CBG08656 ENSCBRT00000002953 K11D12.9 [Source:RefSeq_peptide;Acc:NP_504354]K11D12.9 [Source:RefSeq_peptide;Acc:NP_504354] BY ORTHOLOGY TO:K11D12.9
16.8616 -20.29 0.00446941 1300 3 1 4 [+] picture button
CBG13384 ENSCBRT00000009449 ZK1098.6 encodes a coiled-coil protein that is individually dispensable for viability and gross morphology in RNAi assays, but is cotranscribed with ZK1098.1 and thus might act in concert with it. [Source: WormBase]ZK1098.6 encodes a coiled-coil protein that is individually dispensable for viability and gross morphology in RNAi assays, but is cotranscribed with ZK1098.1 and thus might act in concert with it. [Source: WormBase] BY ORTHOLOGY TO:ZK1098.6
14.7842 -16.44 0.00453097 1300 5 1 7 [+] picture button
CBG14718 ENSCBRT00000006787 T22B7.3 [Source:RefSeq_peptide;Acc:NP_508952]T22B7.3 [Source:RefSeq_peptide;Acc:NP_508952] BY ORTHOLOGY TO:T22B7.3
15.2941 -14.77 0.00460831 1300 4 1 4 [+] picture button
CBG17350 ENSCBRT00000001142 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL003441-RA
14.4086 -16.36 0.00534415 1300 5 2 5 [+] picture button
CBG24465 ENSCBRT00000010601 ZK265.2 [Source:RefSeq_peptide;Acc:NP_492245]ZK265.2 [Source:RefSeq_peptide;Acc:NP_492245] BY ORTHOLOGY TO:ZK265.2
16.6889 -15.13 0.00546323 1300 7 1 14 [+] picture button
CBG01337 ENSCBRT00000005209 T10B5.8 [Source:RefSeq_peptide;Acc:NP_503516]T10B5.8 [Source:RefSeq_peptide;Acc:NP_503516] BY ORTHOLOGY TO:T10B5.8
15.3817 -15.62 0.00554365 1300 5 2 5 [+] picture button
CBG18288 ENSCBRT00000001658 W06F12.2b [Source:RefSeq_peptide;Acc:NP_499833]W06F12.2b [Source:RefSeq_peptide;Acc:NP_499833] BY ORTHOLOGY TO:W06F12.2b
14.4262 -12.54 0.00578191 1300 5 2 5 [+] picture button
CBG09990 ENSCBRT00000008141 ZK632.4 is orthologous to the human gene PHOSPHOMANNOSE ISOMERASE (MPI. OMIM:154550), which when mutated leads to disease. [Source: WormBase]ZK632.4 is orthologous to the human gene PHOSPHOMANNOSE ISOMERASE (MPI. OMIM:154550), which when mutated leads to disease. [Source: WormBase] BY ORTHOLOGY TO:ZK632.4
14.4009 -11.12 0.00604349 1300 3 2 3 [+] picture button
CBG03318 ENSCBRT00000007082 CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) [Source:RefSeq_peptide;Acc:NP_001023607]CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) [Source:RefSeq_peptide;Acc:NP_001023607] BY ORTHOLOGY TO:ZC518.3a
14.473 -12.18 0.00640102 1300 3 1 3 [+] picture button
CBG15669 ENSCBRT00000011936 Transmembrane protein 165 (Transmembrane protein TPARL) (Transmembrane protein PT27). [Source:Uniprot/SWISSPROT;Acc:Q9HC07]Transmembrane protein 165 (Transmembrane protein TPARL) (Transmembrane protein PT27). [Source:Uniprot/SWISSPROT;Acc:Q9HC07] BY ORTHOLOGY TO:SINFRUT00000133468
14.6082 -14.32 0.00651984 1300 1 1 1 [+] picture button
CBG21146 ENSCBRT00000000916 Serpentine receptor class beta-11 (Protein srb-11). [Source:Uniprot/SWISSPROT;Acc:P46506]Serpentine receptor class beta-11 (Protein srb-11). [Source:Uniprot/SWISSPROT;Acc:P46506] BY ORTHOLOGY TO:F23F12.10
14.7827 -23.56 0.00665926 1300 2 1 2 [+] picture button
CBG10995 ENSCBRT00000001206 ZK867.2 [Source:RefSeq_peptide;Acc:NP_509212]ZK867.2 [Source:RefSeq_peptide;Acc:NP_509212] BY ORTHOLOGY TO:ZK867.2
14.7196 -12.41 0.00665926 1300 2 1 2 [+] picture button
CBG05355 ENSCBRT00000002814 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1). [Source:Uniprot/SWISSPROT;Acc:P24928]DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1). [Source:Uniprot/SWISSPROT;Acc:P24928] BY ORTHOLOGY TO:ENSMMUT00000033227
16.4567 -19.97 0.00715483 1300 6 1 8 [+] picture button
CBG08380 ENSCBRT00000013052 R10H10.4 [Source:RefSeq_peptide;Acc:NP_501920]R10H10.4 [Source:RefSeq_peptide;Acc:NP_501920] BY ORTHOLOGY TO:R10H10.4
14.2202 -21.1 0.00800232 1300 3 2 4 [+] picture button
CBG02762 ENSCBRT00000007329 F58G1.7 [Source:RefSeq_peptide;Acc:NP_496758]F58G1.7 [Source:RefSeq_peptide;Acc:NP_496758] BY ORTHOLOGY TO:F58G1.7
14.5679 -14.02 0.00846255 1300 3 1 3 [+] picture button
CBG01064 ENSCBRT00000002284 ZK1307.2 [Source:RefSeq_peptide;Acc:NP_496080]ZK1307.2 [Source:RefSeq_peptide;Acc:NP_496080] BY ORTHOLOGY TO:ZK1307.2
14.2202 -23.79 0.00876476 1300 2 1 2 [+] picture button
CBG20155 ENSCBRT00000000786 Probable histone deacetylase complex subunit SAP18 (Sin3-associated polypeptide, 18 kDa). [Source:Uniprot/SWISSPROT;Acc:Q09250]Probable histone deacetylase complex subunit SAP18 (Sin3-associated polypeptide, 18 kDa). [Source:Uniprot/SWISSPROT;Acc:Q09250] BY ORTHOLOGY TO:C16C10.4
14.172 -12.29 0.00886177 1300 4 1 4 [+] picture button
CBG16856 ENSCBRT00000012764 Growth factor receptor-bound protein 2 (Adapter protein GRB2) (SH2/SH3 adapter GRB2). [Source:Uniprot/SWISSPROT;Acc:Q07883]Growth factor receptor-bound protein 2 (Adapter protein GRB2) (SH2/SH3 adapter GRB2). [Source:Uniprot/SWISSPROT;Acc:Q07883] BY ORTHOLOGY TO:ENSGALT00000013008
16.2465 -21.85 0.00912912 1300 6 2 8 [+] picture button
CBG14567 ENSCBRT00000003350 K05B2.4 [Source:RefSeq_peptide;Acc:NP_508837]K05B2.4 [Source:RefSeq_peptide;Acc:NP_508837] BY ORTHOLOGY TO:K05B2.4
14.7139 -16.61 0.0096058 1300 2 1 2 [+] picture button
CBG04752 ENSCBRT00000010579 CRAL/TRIO and GOLD domain containing family member (ctg-2) [Source:RefSeq_peptide;Acc:NP_495795]CRAL/TRIO and GOLD domain containing family member (ctg-2) [Source:RefSeq_peptide;Acc:NP_495795] BY ORTHOLOGY TO:T13H5.2
16.1966 -26.3 0.00967253 1300 4 1 4 [+] picture button
CBG06063 ENSCBRT00000008495 B0035.15 [Source:RefSeq_peptide;Acc:NP_502121]B0035.15 [Source:RefSeq_peptide;Acc:NP_502121] BY ORTHOLOGY TO:B0035.15
16.1795 -21.11 0.00986504 1300 5 1 6 [+] picture button
CBG08045 ENSCBRT00000003447 F56G4.6 [Source:RefSeq_peptide;Acc:NP_492911]F56G4.6 [Source:RefSeq_peptide;Acc:NP_492911] BY ORTHOLOGY TO:F56G4.6
16.1569 -18.52 0.0101264 1300 1 1 1 [+] picture button
CBG03177 ENSCBRT00000006894 F07H5.8 [Source:RefSeq_peptide;Acc:NP_495874]F07H5.8 [Source:RefSeq_peptide;Acc:NP_495874] BY ORTHOLOGY TO:F07H5.8
14.1953 -14.83 0.0102299 1300 3 2 3 [+] picture button
CBG17385 ENSCBRT00000001164 C03A3.3 [Source:RefSeq_peptide;Acc:NP_509880]C03A3.3 [Source:RefSeq_peptide;Acc:NP_509880] BY ORTHOLOGY TO:C03A3.3
16.1211 -19.6 0.0105552 1300 5 1 4 [+] picture button
CBG09868 ENSCBRT00000007977 K01A11.1 [Source:RefSeq_peptide;Acc:NP_497708]K01A11.1 [Source:RefSeq_peptide;Acc:NP_497708] BY ORTHOLOGY TO:K01A11.1
16.0586 -18.52 0.0113454 1300 3 1 6 [+] picture button
CBG22194 ENSCBRT00000003736 Nuclear cap-binding protein subunit 2 (20 kDa nuclear cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein). [Source:Uniprot/SWISSPROT;Acc:P52298]Nuclear cap-binding protein subunit 2 (20 kDa nuclear cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein). [Source:Uniprot/SWISSPROT;Acc:P52298] BY ORTHOLOGY TO:ENSMMUT00000010957
16.0527 -26.9 0.0114232 1300 3 1 3 [+] picture button
CBG02093 ENSCBRT00000004172 Temporarily Assigned Gene name family member (tag-236) [Source:RefSeq_peptide;Acc:NP_508458]Temporarily Assigned Gene name family member (tag-236) [Source:RefSeq_peptide;Acc:NP_508458] BY ORTHOLOGY TO:R11B5.1
14.7414 -19.48 0.0121148 1300 3 2 3 [+] picture button
CBG20405 ENSCBRT00000003623 cpn-4 encodes a calponin homolog, most closely related to its paralog CPN-3 in C. elegans. CPN-4 is somewhat more similar to calponins per se (such as CLP1 and CLP2 in humans) than to the to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25. [Source: WormBase]cpn-4 encodes a calponin homolog, most closely related to its paralog CPN-3 in C. elegans. CPN-4 is somewhat more similar to calponins per se (such as CLP1 and CLP2 in humans) than to the to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25. [Source: WormBase] BY ORTHOLOGY TO:F49D11.8
14.232 -21.16 0.0134171 1300 2 1 2 [+] picture button
CBG15317 ENSCBRT00000009586 T05D4.3 [Source:RefSeq_peptide;Acc:NP_499805]T05D4.3 [Source:RefSeq_peptide;Acc:NP_499805] BY ORTHOLOGY TO:T05D4.3
15.8629 -19.25 0.0142204 1300 6 2 5 [+] picture button
CBG16918 ENSCBRT00000011703 F11C1.1 [Source:RefSeq_peptide;Acc:NP_510159]F11C1.1 [Source:RefSeq_peptide;Acc:NP_510159] BY ORTHOLOGY TO:F11C1.1
15.8596 -26.52 0.0142743 1300 6 1 8 [+] picture button
CBG13248 ENSCBRT00000001082 crh-1 encodes a homolog of the cyclic AMP-response element binding protein (CREB). crh-1 is involved in the transcription of CRE-sequence dependant genes activated by a CaM kinase cascade. crh-1may also be involved in the integration of environmental cues that induce daur formation and may be part of a chemosensory cascade that regulates TGF-beta signaling. CRH-1 is ubiquitously expressed and localizes to nuclei. [Source: WormBase]crh-1 encodes a homolog of the cyclic AMP-response element binding protein (CREB). crh-1 is involved in the transcription of CRE-sequence dependant genes activated by a CaM kinase cascade. crh-1may also be involved in the integration of environmental cues that induce daur formation and may be part of a chemosensory cascade that regulates TGF-beta signaling. CRH-1 is ubiquitously expressed and localizes to nuclei. [Source: WormBase] BY ORTHOLOGY TO:Y41C4A.4e
15.7954 -20.18 0.01537 1300 3 1 3 [+] picture button

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