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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-239b

164 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG08563 ENSCBRT00000002851 Seven TM Receptor family member (str-178) [Source:RefSeq_peptide;Acc:NP_506176]Seven TM Receptor family member (str-178) [Source:RefSeq_peptide;Acc:NP_506176] BY ORTHOLOGY TO:R11D1.5
14.9773 -10.06 1.56262e-05 1300 3 2 2 [+] picture button
CBG00759 ENSCBRT00000004038 E3 ubiquitin-protein ligase rpm-1 (EC 6.3.2.-) (Pam/highwire/rpm-1 protein) (Regulator of presynaptic morphology protein 1) (Synapse defective protein 3). [Source:Uniprot/SWISSPROT;Acc:Q17551]E3 ubiquitin-protein ligase rpm-1 (EC 6.3.2.-) (Pam/highwire/rpm-1 protein) (Regulator of presynaptic morphology protein 1) (Synapse defective protein 3). [Source:Uniprot/SWISSPROT;Acc:Q17551] BY ORTHOLOGY TO:C01B7.6
14.6091 -12.08 2.79033e-05 1300 2 2 2 [+] picture button
CBG07573 ENSCBRT00000011141 hch-1 encodes a member of the zinc-dependent metalloprotease family that contains an epidermal growth factor-like domain, a CUB domain, and a TSP1 domain and affects hatching and QL neuroblast migration. [Source: WormBase]hch-1 encodes a member of the zinc-dependent metalloprotease family that contains an epidermal growth factor-like domain, a CUB domain, and a TSP1 domain and affects hatching and QL neuroblast migration. [Source: WormBase] BY ORTHOLOGY TO:F40E10.1
16.5499 -19.21 0.000101558 1300 3 1 4 [+] picture button
CBG02333 ENSCBRT00000006685 Zinc metalloproteinase nas-29 precursor (EC 3.4.24.21) (Nematode astacin 29). [Source:Uniprot/SWISSPROT;Acc:Q20958]Zinc metalloproteinase nas-29 precursor (EC 3.4.24.21) (Nematode astacin 29). [Source:Uniprot/SWISSPROT;Acc:Q20958] BY ORTHOLOGY TO:F58A6.4
14.6057 -11.02 0.000112031 1300 6 1 4 [+] picture button
CBG09836 ENSCBRT00000008010 Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601]Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601] BY ORTHOLOGY TO:Y71H2AL.1
16.047 -14.4 0.000124578 1300 7 1 6 [+] picture button
CBG23381 ENSCBRT00000011498 Nuclear hormone receptor family member nhr-153. [Source:Uniprot/SWISSPROT;Acc:O01929]Nuclear hormone receptor family member nhr-153. [Source:Uniprot/SWISSPROT;Acc:O01929] BY ORTHOLOGY TO:C13C4.1
16.6191 -19.46 0.000417786 1300 1 2 1 [+] picture button
CBG01635 ENSCBRT00000005520 F15E6.2 [Source:RefSeq_peptide;Acc:NP_500538]F15E6.2 [Source:RefSeq_peptide;Acc:NP_500538] BY ORTHOLOGY TO:F15E6.2
15.9575 -15.81 0.000627198 1300 4 1 3 [+] picture button
CBG09868 ENSCBRT00000007977 K01A11.1 [Source:RefSeq_peptide;Acc:NP_497708]K01A11.1 [Source:RefSeq_peptide;Acc:NP_497708] BY ORTHOLOGY TO:K01A11.1
16.0586 -15.39 0.00105764 1300 3 1 6 [+] picture button
CBG08288 ENSCBRT00000012993 Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia protein). [Source:Uniprot/SWISSPROT;Acc:P21461]Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia protein). [Source:Uniprot/SWISSPROT;Acc:P21461] BY ORTHOLOGY TO:CG9949-RA
15.2728 -12.19 0.00137315 1300 2 1 1 [+] picture button
CBG05797 ENSCBRT00000009089 C42D4.3 [Source:RefSeq_peptide;Acc:NP_501132]C42D4.3 [Source:RefSeq_peptide;Acc:NP_501132] BY ORTHOLOGY TO:C42D4.3
15.8596 -16.35 0.00146277 1300 3 1 3 [+] picture button
CBG14386 ENSCBRT00000002784 C52B9.2b [Source:RefSeq_peptide;Acc:NP_001024483]C52B9.2b [Source:RefSeq_peptide;Acc:NP_001024483] BY ORTHOLOGY TO:C52B9.2b
15.4379 -15.55 0.001472 1300 4 2 3 [+] picture button
CBG04819 ENSCBRT00000010021 Nuclear Hormone Receptor family member (nhr-233) [Source:RefSeq_peptide;Acc:NP_507191]Nuclear Hormone Receptor family member (nhr-233) [Source:RefSeq_peptide;Acc:NP_507191] BY ORTHOLOGY TO:Y32B12B.6
15.1835 -12.1 0.00165704 1300 6 1 5 [+] picture button
CBG17637 ENSCBRT00000002180 opt-1 encodes a high-affinity, proton-coupled oligopeptide transporter. when expressed in Xenopus ooctyes, OPT-1 exhibits proton-coupled transport activity for a broad spectrum of peptide substrates. opt-1 mRNA is detected at all stages of development, but is expressed at highest levels in late larval and adult stages. additionally, an opt-1::GFP reporter exhibits expression primarily in vulval, pharyngeal, and anal muscles. as loss of opt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of opt-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]opt-1 encodes a high-affinity, proton-coupled oligopeptide transporter. when expressed in Xenopus ooctyes, OPT-1 exhibits proton-coupled transport activity for a broad spectrum of peptide substrates. opt-1 mRNA is detected at all stages of development, but is expressed at highest levels in late larval and adult stages. additionally, an opt-1::GFP reporter exhibits expression primarily in vulval, pharyngeal, and anal muscles. as loss of opt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of opt-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:C06G8.2
15.014 -11.96 0.00166167 1300 3 1 2 [+] picture button
CBG03879 ENSCBRT00000008708 TPX2 (Targeting Protein for Xenopus Klp2)-Like family member (tpxl-1) [Source:RefSeq_peptide;Acc:NP_740805]TPX2 (Targeting Protein for Xenopus Klp2)-Like family member (tpxl-1) [Source:RefSeq_peptide;Acc:NP_740805] BY ORTHOLOGY TO:Y39G10AR.12a
15.0764 -17.71 0.00168847 1300 4 1 3 [+] picture button
ENSCBRT00000000276 T25D1.2 [Source:RefSeq_peptide;Acc:NP_510678]T25D1.2 [Source:RefSeq_peptide;Acc:NP_510678] BY ORTHOLOGY TO:T25D1.2
16.2593 -11.54 0.00196316 1300 8 1 12 [+] picture button
CBG22283 ENSCBRT00000003595 spe-15 encodes an unconventional myosin, and is homologous to both Drosophila and mouse myosin VI. spe-15 was identified in screens for mutants that have defective spermatogenesis. spe-15 is required during the terminal stages of spermatogenesis for the asymmetric partitioning of organelles like the mitochondria and for the proper partitioning of specialized structures called the fibrous-body membranous organelles into the spermatid. mutant spe-15 spermatids contain actin filaments in contrast to wild-type which lack them. spe-15 is also required for the proper morphology and activation of the spermatid. the human gene MYOSIN VI (MYO6. OMIM:600970), when mutated leads to disease that affects hearing. [Source: WormBase]spe-15 encodes an unconventional myosin, and is homologous to both Drosophila and mouse myosin VI. spe-15 was identified in screens for mutants that have defective spermatogenesis. spe-15 is required during the terminal stages of spermatogenesis for the asymmetric partitioning of organelles like the mitochondria and for the proper partitioning of specialized structures called the fibrous-body membranous organelles into the spermatid. mutant spe-15 spermatids contain actin filaments in contrast to wild-type which lack them. spe-15 is also required for the proper morphology and activation of the spermatid. the human gene MYOSIN VI (MYO6. OMIM:600970), when mutated leads to disease that affects hearing. [Source: WormBase] BY ORTHOLOGY TO:F47G6.4
14.9249 -10.98 0.00199161 1300 7 1 7 [+] picture button
CBG23119 ENSCBRT00000012030 T19C4.1 [Source:RefSeq_peptide;Acc:NP_505835]T19C4.1 [Source:RefSeq_peptide;Acc:NP_505835] BY ORTHOLOGY TO:T19C4.1
15.8704 -17.8 0.00213457 1300 3 1 3 [+] picture button
CBG21313 ENSCBRT00000000755 MGC10433 protein. [Source:Uniprot/SPTREMBL;Acc:Q9BU66]MGC10433 protein. [Source:Uniprot/SPTREMBL;Acc:Q9BU66] BY ORTHOLOGY TO:ENST00000262633
15.1949 -17.55 0.00237688 1300 2 1 3 [+] picture button
CBG02552 ENSCBRT00000007567 ins-6 encodes predicted type-beta insulin-like molecule that lacks a C peptide domain. expressed throughout development and in some neurons beginning in the two-fold elongated embryo. [Source: WormBase]ins-6 encodes predicted type-beta insulin-like molecule that lacks a C peptide domain. expressed throughout development and in some neurons beginning in the two-fold elongated embryo. [Source: WormBase] BY ORTHOLOGY TO:ZK84.6
15.7155 -25.42 0.0024058 1300 4 1 3 [+] picture button
CBG18365 ENSCBRT00000001586 UNCoordinated family member (unc-49) [Source:RefSeq_peptide;Acc:NP_001022781]UNCoordinated family member (unc-49) [Source:RefSeq_peptide;Acc:NP_001022781] BY ORTHOLOGY TO:T21C12.1a
15.8272 -20.76 0.0027795 1300 10 1 14 [+] picture button
CBG24384 ENSCBRT00000009391 K10D11.5 [Source:RefSeq_peptide;Acc:NP_502490]K10D11.5 [Source:RefSeq_peptide;Acc:NP_502490] BY ORTHOLOGY TO:K10D11.5
14.8292 -9.95 0.00294461 1300 3 1 3 [+] picture button
CBG04323 ENSCBRT00000007693 Serpentine receptor class alpha-31 (Protein sra-31). [Source:Uniprot/SWISSPROT;Acc:Q18881]Serpentine receptor class alpha-31 (Protein sra-31). [Source:Uniprot/SWISSPROT;Acc:Q18881] BY ORTHOLOGY TO:C56C10.5
17.1465 -21.82 0.00294922 1300 6 1 6 [+] picture button
CBG06765 ENSCBRT00000009620 Homeobox protein SIX4 (Sine oculis homeobox homolog 4). [Source:Uniprot/SWISSPROT;Acc:Q9UIU6]Homeobox protein SIX4 (Sine oculis homeobox homolog 4). [Source:Uniprot/SWISSPROT;Acc:Q9UIU6] BY ORTHOLOGY TO:ENST00000216513
15.1743 -17.03 0.00302368 1300 4 1 3 [+] picture button
CBG19837 ENSCBRT00000002401 Serpentine Receptor, class V family member (srv-19) [Source:RefSeq_peptide;Acc:NP_500878]Serpentine Receptor, class V family member (srv-19) [Source:RefSeq_peptide;Acc:NP_500878] BY ORTHOLOGY TO:H04M03.6
15.2648 -13.47 0.00307063 1300 9 1 8 [+] picture button
CBG02443 ENSCBRT00000006539 C17C3.1a [Source:RefSeq_peptide;Acc:NP_495075]C17C3.1a [Source:RefSeq_peptide;Acc:NP_495075] BY ORTHOLOGY TO:C17C3.1a
15.1835 -11.99 0.003173 1300 3 1 3 [+] picture button
CBG19039 ENSCBRT00000014061 NOT ANNOTATED
15.0764 -11.83 0.00322977 1300 5 1 6 [+] picture button
CBG09879 ENSCBRT00000008076 UPF0049 protein ZK1128.2. [Source:Uniprot/SWISSPROT;Acc:Q09357]UPF0049 protein ZK1128.2. [Source:Uniprot/SWISSPROT;Acc:Q09357] BY ORTHOLOGY TO:ZK1128.2b
14.8806 -9.81 0.00366252 1300 2 1 1 [+] picture button
CBG14679 ENSCBRT00000006845 C03F11.2 [Source:RefSeq_peptide;Acc:NP_508918]C03F11.2 [Source:RefSeq_peptide;Acc:NP_508918] BY ORTHOLOGY TO:C03F11.2
14.7241 -13.87 0.00407864 1300 4 1 4 [+] picture button
CBG11145 ENSCBRT00000014473 F41G3.3 [Source:RefSeq_peptide;Acc:NP_495382]F41G3.3 [Source:RefSeq_peptide;Acc:NP_495382] BY ORTHOLOGY TO:F41G3.3
15.0198 -12.65 0.0040877 1300 3 1 2 [+] picture button
CBG17385 ENSCBRT00000001164 C03A3.3 [Source:RefSeq_peptide;Acc:NP_509880]C03A3.3 [Source:RefSeq_peptide;Acc:NP_509880] BY ORTHOLOGY TO:C03A3.3
14.5483 -21.81 0.00423554 1300 5 1 4 [+] picture button
CBG19377 ENSCBRT00000013561 Serpentine Receptor, class U family member (sru-38) [Source:RefSeq_peptide;Acc:NP_505538]Serpentine Receptor, class U family member (sru-38) [Source:RefSeq_peptide;Acc:NP_505538] BY ORTHOLOGY TO:R07B5.4
14.8806 -11.85 0.00426167 1300 4 1 4 [+] picture button
CBG19233 ENSCBRT00000013438 F07C3.2 [Source:RefSeq_peptide;Acc:NP_505390]F07C3.2 [Source:RefSeq_peptide;Acc:NP_505390] BY ORTHOLOGY TO:F07C3.2
16.0773 -15.56 0.00429803 1300 2 2 3 [+] picture button
CBG17488 ENSCBRT00000002273 T12A2.6 [Source:RefSeq_peptide;Acc:NP_498359]T12A2.6 [Source:RefSeq_peptide;Acc:NP_498359] BY ORTHOLOGY TO:T12A2.6
15.3976 -14.22 0.00432404 1300 3 1 3 [+] picture button
CBG24900 ENSCBRT00000012465 F44D12.8 [Source:RefSeq_peptide;Acc:NP_501809]F44D12.8 [Source:RefSeq_peptide;Acc:NP_501809] BY ORTHOLOGY TO:F44D12.8
14.5171 -12.01 0.00450422 1300 6 1 7 [+] picture button
CBG19797 ENSCBRT00000000397 Y105E8B.7 [Source:RefSeq_peptide;Acc:NP_493542]Y105E8B.7 [Source:RefSeq_peptide;Acc:NP_493542] BY ORTHOLOGY TO:Y105E8B.7
17.426 -17.48 0.00455528 1300 2 1 2 [+] picture button
CBG06822 ENSCBRT00000007422 Putative serine/threonine-protein kinase R107.4 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:P32742]Putative serine/threonine-protein kinase R107.4 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:P32742] BY ORTHOLOGY TO:R107.4b
14.7101 -13.54 0.00455602 1300 3 1 2 [+] picture button
CBG11247 ENSCBRT00000014518 F52E1.2 [Source:RefSeq_peptide;Acc:NP_505170]F52E1.2 [Source:RefSeq_peptide;Acc:NP_505170] BY ORTHOLOGY TO:F52E1.2
14.4989 -11.54 0.00466873 1300 4 1 3 [+] picture button
CBG17433 ENSCBRT00000001199 grd-1 encodes a hedgehog-like protein, with (from N- to C-terminus) a signal sequence, a Ground domain, an extended region of low-complexity sequence, and a Hint/Hog domain. GRD-1 is expressed in rectal cells. the Hint/Hog domain is predicted to cut GRD-1 into two halves and then covalently link cholesterol to the C-terminus of the Ground domain. the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-1 is weakly required for normal molting. GRD-1 is also required for normal growth to full size, cuticle adhesion, and male tail development. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase]grd-1 encodes a hedgehog-like protein, with (from N- to C-terminus) a signal sequence, a Ground domain, an extended region of low-complexity sequence, and a Hint/Hog domain. GRD-1 is expressed in rectal cells. the Hint/Hog domain is predicted to cut GRD-1 into two halves and then covalently link cholesterol to the C-terminus of the Ground domain. the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-1 is weakly required for normal molting. GRD-1 is also required for normal growth to full size, cuticle adhesion, and male tail development. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase] BY ORTHOLOGY TO:R08B4.1a
14.4989 -10.11 0.00466873 1300 3 1 2 [+] picture button
CBG19111 ENSCBRT00000013897 BTB/POZ domain-containing protein 9. [Source:Uniprot/SWISSPROT;Acc:Q96Q07]BTB/POZ domain-containing protein 9. [Source:Uniprot/SWISSPROT;Acc:Q96Q07] BY ORTHOLOGY TO:ENSXETT00000023529
15.2814 -9.83 0.00467883 1300 6 1 5 [+] picture button
CBG15949 ENSCBRT00000014230 Expression experimentally verified by RT-PCR. [Source: WormBase]Expression experimentally verified by RT-PCR. [Source: WormBase] BY ORTHOLOGY TO:B0302.1c
16.163 -18.16 0.00478101 1300 5 1 5 [+] picture button
CBG04049 ENSCBRT00000009901 W02D3.12 [Source:RefSeq_peptide;Acc:NP_740875]W02D3.12 [Source:RefSeq_peptide;Acc:NP_740875] BY ORTHOLOGY TO:W02D3.12
14.7973 -12.16 0.00503229 1300 3 1 3 [+] picture button
CBG08128 ENSCBRT00000003714 p53-induced protein [Source:RefSeq_peptide;Acc:NP_006025]p53-induced protein [Source:RefSeq_peptide;Acc:NP_006025] BY ORTHOLOGY TO:ENSOANT00000005083
14.7827 -12.07 0.00517999 1300 4 2 4 [+] picture button
CBG22724 ENSCBRT00000004221 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL001818-RA
16.6428 -22.76 0.00551727 1300 3 2 4 [+] picture button
CBG23642 ENSCBRT00000002664 C02F5.11 [Source:RefSeq_peptide;Acc:NP_498803]C02F5.11 [Source:RefSeq_peptide;Acc:NP_498803] BY ORTHOLOGY TO:C02F5.11
17.1742 -23.39 0.00596246 1300 3 1 4 [+] picture button
CBG22960 ENSCBRT00000008780 F49E11.7 [Source:RefSeq_peptide;Acc:NP_502500]F49E11.7 [Source:RefSeq_peptide;Acc:NP_502500] BY ORTHOLOGY TO:F49E11.7
15.0569 -13.87 0.00607055 1300 3 2 4 [+] picture button
CBG24767 ENSCBRT00000009266 R04B5.9 [Source:RefSeq_peptide;Acc:NP_505595]R04B5.9 [Source:RefSeq_peptide;Acc:NP_505595] BY ORTHOLOGY TO:R04B5.9
14.6959 -12.65 0.00730714 1300 4 2 5 [+] picture button
CBG18058 ENSCBRT00000003159 NorDiHydroGuaiaretic acid resistant family member (ndg-4) [Source:RefSeq_peptide;Acc:NP_001022619]NorDiHydroGuaiaretic acid resistant family member (ndg-4) [Source:RefSeq_peptide;Acc:NP_001022619] BY ORTHOLOGY TO:F56F3.2b
14.6848 -11.85 0.00740773 1300 5 2 5 [+] picture button
CBG19731 ENSCBRT00000000333 Putative serine/threonine-protein kinase K06H7.1 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:P34516]Putative serine/threonine-protein kinase K06H7.1 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:P34516] BY ORTHOLOGY TO:K06H7.8
14.5957 -15.84 0.00748639 1300 5 1 5 [+] picture button
CBG13359 ENSCBRT00000009474 F10F2.8 [Source:RefSeq_peptide;Acc:NP_497946]F10F2.8 [Source:RefSeq_peptide;Acc:NP_497946] BY ORTHOLOGY TO:F10F2.8
14.7884 -11.12 0.00765841 1300 3 1 3 [+] picture button
ENSCBRT00000006737 Y34B4A.5 [Source:RefSeq_peptide;Acc:NP_508892]Y34B4A.5 [Source:RefSeq_peptide;Acc:NP_508892] BY ORTHOLOGY TO:Y34B4A.5
14.5842 -11.42 0.00765841 1300 5 1 6 [+] picture button

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