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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-235

198 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG09497 ENSCBRT00000005987 T16G1.9 [Source:RefSeq_peptide;Acc:NP_506239]T16G1.9 [Source:RefSeq_peptide;Acc:NP_506239] BY ORTHOLOGY TO:T16G1.9
17.662 -29.95 4.21758e-05 1300 2 2 2 [+] picture button
CBG03886 ENSCBRT00000008716 F12B6.3 [Source:RefSeq_peptide;Acc:NP_490946]F12B6.3 [Source:RefSeq_peptide;Acc:NP_490946] BY ORTHOLOGY TO:F12B6.3
15.8947 -23.72 5.73696e-05 1300 4 1 2 [+] picture button
CBG19238 ENSCBRT00000013444 Seven TM Receptor family member (str-94) [Source:RefSeq_peptide;Acc:NP_505395]Seven TM Receptor family member (str-94) [Source:RefSeq_peptide;Acc:NP_505395] BY ORTHOLOGY TO:F07C3.8
15.9931 -15.87 0.000322992 1300 1 2 1 [+] picture button
CBG17620 ENSCBRT00000002163 Bestrophin-1. [Source:Uniprot/SWISSPROT;Acc:Q21973]Bestrophin-1. [Source:Uniprot/SWISSPROT;Acc:Q21973] BY ORTHOLOGY TO:R13.3
15.8056 -16.63 0.000383141 1300 5 1 5 [+] picture button
CBG24784 ENSCBRT00000009554 Conserved oligomeric Golgi complex component 6. [Source:Uniprot/SWISSPROT;Acc:Q9Y2V7]Conserved oligomeric Golgi complex component 6. [Source:Uniprot/SWISSPROT;Acc:Q9Y2V7] BY ORTHOLOGY TO:SINFRUT00000151054
16.9224 -13.85 0.000450822 1300 6 1 9 [+] picture button
CBG23058 ENSCBRT00000011949 F17C11.3 [Source:RefSeq_peptide;Acc:NP_505793]F17C11.3 [Source:RefSeq_peptide;Acc:NP_505793] BY ORTHOLOGY TO:F17C11.3
15.9523 -19.09 0.000523675 1300 3 2 3 [+] picture button
CBG18408 ENSCBRT00000000983 Y46G5A.29 [Source:RefSeq_peptide;Acc:NP_496734]Y46G5A.29 [Source:RefSeq_peptide;Acc:NP_496734] BY ORTHOLOGY TO:Y46G5A.29
15.6332 -12.18 0.000631082 1300 2 1 4 [+] picture button
CBG05166 ENSCBRT00000002655 Inhibitor-2, putativeInhibitor-2, putative BY ORTHOLOGY TO:AAEL007410-RA
15.2482 -15.94 0.000647379 1300 5 1 4 [+] picture button
CBG19005 ENSCBRT00000014092 grl-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase]grl-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase] BY ORTHOLOGY TO:ZC487.4
15.8851 -12.93 0.000715745 1300 2 2 2 [+] picture button
CBG05909 ENSCBRT00000008991 F49E8.6 [Source:RefSeq_peptide;Acc:NP_501224]F49E8.6 [Source:RefSeq_peptide;Acc:NP_501224] BY ORTHOLOGY TO:F49E8.6
15.7877 -17.4 0.00108404 1300 7 1 8 [+] picture button
CBG08170 ENSCBRT00000003768 R04A9.1 [Source:RefSeq_peptide;Acc:NP_508097]R04A9.1 [Source:RefSeq_peptide;Acc:NP_508097] BY ORTHOLOGY TO:R04A9.1
15.059 -13.63 0.0011997 1300 4 1 4 [+] picture button
CBG00578 ENSCBRT00000003118 W01C9.2 [Source:RefSeq_peptide;Acc:NP_495803]W01C9.2 [Source:RefSeq_peptide;Acc:NP_495803] BY ORTHOLOGY TO:W01C9.2
15.1272 -15.52 0.00165685 1300 5 2 11 [+] picture button
CBG04712 ENSCBRT00000010548 F40G12.4 [Source:RefSeq_peptide;Acc:NP_506531]F40G12.4 [Source:RefSeq_peptide;Acc:NP_506531] BY ORTHOLOGY TO:F40G12.4
15.1261 -24.65 0.00166093 1300 2 1 2 [+] picture button
CBG07049 ENSCBRT00000012416 COLlagen family member (col-69) [Source:RefSeq_peptide;Acc:NP_493702]COLlagen family member (col-69) [Source:RefSeq_peptide;Acc:NP_493702] BY ORTHOLOGY TO:K01A2.7
15.1706 -15.09 0.00172824 1300 4 1 5 [+] picture button
CBG14325 ENSCBRT00000002755 R02E12.4 [Source:RefSeq_peptide;Acc:NP_508689]R02E12.4 [Source:RefSeq_peptide;Acc:NP_508689] BY ORTHOLOGY TO:R02E12.4
14.7629 -19.09 0.0018242 1300 3 1 3 [+] picture button
CBG06977 ENSCBRT00000012330 K10B4.1 [Source:RefSeq_peptide;Acc:NP_493669]K10B4.1 [Source:RefSeq_peptide;Acc:NP_493669] BY ORTHOLOGY TO:K10B4.1
14.7561 -20.03 0.00227292 1300 3 1 2 [+] picture button
CBG02748 ENSCBRT00000007338 ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539]ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539] BY ORTHOLOGY TO:ZK930.2
14.8131 -13.49 0.00247203 1300 10 1 17 [+] picture button
CBG10834 ENSCBRT00000001405 DNA-binding protein D-ETS-4. [Source:Uniprot/SWISSPROT;Acc:P29775]DNA-binding protein D-ETS-4. [Source:Uniprot/SWISSPROT;Acc:P29775] BY ORTHOLOGY TO:CG5583-RA
14.9207 -17.15 0.00265584 1300 4 2 3 [+] picture button
CBG20958 ENSCBRT00000000605 Serpentine receptor class epsilon-33 (Protein sre-33). [Source:Uniprot/SWISSPROT;Acc:O18175]Serpentine receptor class epsilon-33 (Protein sre-33). [Source:Uniprot/SWISSPROT;Acc:O18175] BY ORTHOLOGY TO:W05H5.6
15.4582 -16.13 0.00269065 1300 4 1 4 [+] picture button
CBG16482 ENSCBRT00000014631 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:F57B9.9
14.9196 -14.19 0.00295347 1300 2 1 2 [+] picture button
CBG00873 ENSCBRT00000003961 F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991]F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991] BY ORTHOLOGY TO:F42A8.1
14.9481 -16.46 0.00321712 1300 6 2 11 [+] picture button
CBG00571 ENSCBRT00000003103 W01C9.5 [Source:RefSeq_peptide;Acc:NP_495806]W01C9.5 [Source:RefSeq_peptide;Acc:NP_495806] BY ORTHOLOGY TO:W01C9.5
17.4444 -26.58 0.00321824 1300 3 1 5 [+] picture button
CBG02113 ENSCBRT00000004186 Tetratricopeptide repeat protein 15 (TPR repeat protein 15). [Source:Uniprot/SWISSPROT;Acc:Q8WVT3]Tetratricopeptide repeat protein 15 (TPR repeat protein 15). [Source:Uniprot/SWISSPROT;Acc:Q8WVT3] BY ORTHOLOGY TO:SINFRUT00000129838
15.3108 -20.5 0.00363074 1300 5 1 5 [+] picture button
CBG07079 ENSCBRT00000012437 Y51H7BR.4 [Source:RefSeq_peptide;Acc:NP_493987]Y51H7BR.4 [Source:RefSeq_peptide;Acc:NP_493987] BY ORTHOLOGY TO:Y51H7BR.4
16.8639 -18.21 0.00378588 1300 6 1 5 [+] picture button
CBG03264 ENSCBRT00000005043 DYnein light chain (RoadBlock type) family member (dyrb-1) [Source:RefSeq_peptide;Acc:NP_495943]DYnein light chain (RoadBlock type) family member (dyrb-1) [Source:RefSeq_peptide;Acc:NP_495943] BY ORTHOLOGY TO:T24H10.6
15.6773 -16.25 0.00385833 1300 4 1 3 [+] picture button
CBG16373 ENSCBRT00000011255 SUppressor of activated let-60 Ras family member (sur-7) [Source:RefSeq_peptide;Acc:NP_741942]SUppressor of activated let-60 Ras family member (sur-7) [Source:RefSeq_peptide;Acc:NP_741942] BY ORTHOLOGY TO:F01G12.2b
14.7955 -12 0.00404153 1300 4 1 3 [+] picture button
CBG15066 ENSCBRT00000000508 Y11D7A.9 [Source:RefSeq_peptide;Acc:NP_501615]Y11D7A.9 [Source:RefSeq_peptide;Acc:NP_501615] BY ORTHOLOGY TO:Y11D7A.9
14.738 -11.56 0.00406886 1300 2 2 2 [+] picture button
CBG18951 ENSCBRT00000014144 gephyrin [Source:MarkerSymbol;Acc:MGI:109602]gephyrin [Source:MarkerSymbol;Acc:MGI:109602] BY ORTHOLOGY TO:ENSMUST00000052472
15.8851 -23.1 0.00417736 1300 3 1 3 [+] picture button
CBG01792 ENSCBRT00000005656 Mitochondrial intermediate peptidase, mitochondrial precursor (EC 3.4.24.59) (MIP). [Source:Uniprot/SWISSPROT;Acc:Q99797]Mitochondrial intermediate peptidase, mitochondrial precursor (EC 3.4.24.59) (MIP). [Source:Uniprot/SWISSPROT;Acc:Q99797] BY ORTHOLOGY TO:ENSXETT00000021375
15.2469 -16.43 0.0042054 1300 3 1 2 [+] picture button
CBG07373 ENSCBRT00000011817 F55F3.4 [Source:RefSeq_peptide;Acc:NP_510301]F55F3.4 [Source:RefSeq_peptide;Acc:NP_510301] BY ORTHOLOGY TO:F55F3.4
17.1542 -24.31 0.00443807 1300 3 1 3 [+] picture button
CBG05915 ENSCBRT00000008999 F32E10.5 [Source:RefSeq_peptide;Acc:NP_501230]F32E10.5 [Source:RefSeq_peptide;Acc:NP_501230] BY ORTHOLOGY TO:F32E10.5
14.7157 -25 0.00454046 1300 1 1 1 [+] picture button
CBG24658 ENSCBRT00000007792 T23F1.5 [Source:RefSeq_peptide;Acc:NP_506848]T23F1.5 [Source:RefSeq_peptide;Acc:NP_506848] BY ORTHOLOGY TO:T23F1.5
14.7022 -13.38 0.00454826 1300 3 2 3 [+] picture button
CBG14067 ENSCBRT00000002540 T24C12.1 [Source:RefSeq_peptide;Acc:NP_508406]T24C12.1 [Source:RefSeq_peptide;Acc:NP_508406] BY ORTHOLOGY TO:T24C12.1
15.6902 -16.68 0.00464215 1300 1 1 1 [+] picture button
CBG23471 ENSCBRT00000011584 TWiK family of potassium channels family member (twk-14) [Source:RefSeq_peptide;Acc:NP_506103]TWiK family of potassium channels family member (twk-14) [Source:RefSeq_peptide;Acc:NP_506103] BY ORTHOLOGY TO:K01D12.4
14.8243 -12.69 0.00491993 1300 6 2 6 [+] picture button
CBG12999 ENSCBRT00000012946 F35D2.3 [Source:RefSeq_peptide;Acc:NP_495588]F35D2.3 [Source:RefSeq_peptide;Acc:NP_495588] BY ORTHOLOGY TO:F35D2.3
16.9571 -29.85 0.00551924 1300 3 1 4 [+] picture button
CBG03169 ENSCBRT00000006895 Sarcoglycan CG14808-PA [Source:RefSeq_peptide;Acc:NP_525039]Sarcoglycan CG14808-PA [Source:RefSeq_peptide;Acc:NP_525039] BY ORTHOLOGY TO:CG14808-RA
14.8367 -13.18 0.0057809 1300 3 1 3 [+] picture button
CBG10451 ENSCBRT00000007954 T05E7.1 [Source:RefSeq_peptide;Acc:NP_491788]T05E7.1 [Source:RefSeq_peptide;Acc:NP_491788] BY ORTHOLOGY TO:T05E7.1
16.9067 -23.45 0.00583595 1300 5 1 5 [+] picture button
CBG08630 ENSCBRT00000002966 Serpentine Receptor, class SX family member (srsx-5) [Source:RefSeq_peptide;Acc:NP_505038]Serpentine Receptor, class SX family member (srsx-5) [Source:RefSeq_peptide;Acc:NP_505038] BY ORTHOLOGY TO:Y97E10B.2
14.7245 -20.94 0.00586273 1300 6 2 6 [+] picture button
ENSCBRT00000006411 C34D1.1 [Source:RefSeq_peptide;Acc:NP_506288]C34D1.1 [Source:RefSeq_peptide;Acc:NP_506288] BY ORTHOLOGY TO:C34D1.1
14.6182 -17.22 0.00646023 1300 6 2 6 [+] picture button
CBG02104 ENSCBRT00000004178 N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase precursor (EC 3.5.1.26) (Glycosylasparaginase) (Aspartylglucosaminidase) (N4-(N- acetyl-beta-glucosaminyl)-L-asparagine amidase) (AGA) [Contains: Glycosylasparaginase alpha chain; Glycosylasparaginase beta c [Source:Uniprot/SWISSPROT;Acc:P30919]N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase precursor (EC 3.5.1.26) (Glycosylasparaginase) (Aspartylglucosaminidase) (N4-(N- acetyl-beta-glucosaminyl)-L-asparagine amidase) (AGA) [Contains: Glycosylasparaginase alpha chain; Glycosylasparaginase beta c [Source:Uniprot/SWISSPROT;Acc:P30919] BY ORTHOLOGY TO:ENSRNOT00000000120
14.6281 -12.82 0.00660313 1300 6 2 10 [+] picture button
CBG11286 ENSCBRT00000014501 TropoMoDulin family member (tmd-2) [Source:RefSeq_peptide;Acc:NP_872143]TropoMoDulin family member (tmd-2) [Source:RefSeq_peptide;Acc:NP_872143] BY ORTHOLOGY TO:C08D8.2b
16.7842 -16.65 0.00668117 1300 6 1 11 [+] picture button
CBG19837 ENSCBRT00000002401 Serpentine Receptor, class V family member (srv-19) [Source:RefSeq_peptide;Acc:NP_500878]Serpentine Receptor, class V family member (srv-19) [Source:RefSeq_peptide;Acc:NP_500878] BY ORTHOLOGY TO:H04M03.6
16.7734 -23.99 0.00676139 1300 9 1 8 [+] picture button
CBG19103 ENSCBRT00000013909 HEAT repeat containing 5B [Source:RefSeq_peptide;Acc:NP_061897]HEAT repeat containing 5B [Source:RefSeq_peptide;Acc:NP_061897] BY ORTHOLOGY TO:ENSMODT00000019534
14.46 -11.78 0.0069566 1300 1 2 1 [+] picture button
CBG05945 ENSCBRT00000009022 F33D4.6b [Source:RefSeq_peptide;Acc:NP_501260]F33D4.6b [Source:RefSeq_peptide;Acc:NP_501260] BY ORTHOLOGY TO:F33D4.6b
14.5208 -9.97 0.00700487 1300 3 2 3 [+] picture button
CBG02849 ENSCBRT00000006228 Nup170 CG6743-PA [Source:RefSeq_peptide;Acc:NP_609446]Nup170 CG6743-PA [Source:RefSeq_peptide;Acc:NP_609446] BY ORTHOLOGY TO:CG6743-RA
14.9106 -18.49 0.00704721 1300 6 2 5 [+] picture button
CBG23612 ENSCBRT00000001535 grl-5 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase]grl-5 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase] BY ORTHOLOGY TO:Y47D7A.5
14.4256 -10.01 0.00716386 1300 3 1 6 [+] picture button
CBG23496 ENSCBRT00000011596 C54D10.10 [Source:RefSeq_peptide;Acc:NP_506123]C54D10.10 [Source:RefSeq_peptide;Acc:NP_506123] BY ORTHOLOGY TO:C54D10.10
14.5461 -27.3 0.007216 1300 3 1 3 [+] picture button
CBG16758 ENSCBRT00000012841 F27D9.2 [Source:RefSeq_peptide;Acc:NP_509296]F27D9.2 [Source:RefSeq_peptide;Acc:NP_509296] BY ORTHOLOGY TO:F27D9.2
14.4233 -13.94 0.00749 1300 2 1 2 [+] picture button
CBG00261 ENSCBRT00000000234 D1053.3 [Source:RefSeq_peptide;Acc:NP_509964]D1053.3 [Source:RefSeq_peptide;Acc:NP_509964] BY ORTHOLOGY TO:D1053.3
16.6257 -18 0.00795868 1300 2 2 2 [+] picture button
CBG11380 ENSCBRT00000014029 col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. [Source: WormBase]col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. [Source: WormBase] BY ORTHOLOGY TO:ZC513.8
14.4233 -9.17 0.00804948 1300 8 2 8 [+] picture button

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