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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-233

152 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG19153 ENSCBRT00000013387 Serpentine Receptor, class X family member (srx-1) [Source:RefSeq_peptide;Acc:NP_505328]Serpentine Receptor, class X family member (srx-1) [Source:RefSeq_peptide;Acc:NP_505328] BY ORTHOLOGY TO:F59E11.1
16.2503 -19.79 7.46962e-05 1300 7 1 6 [+] picture button
ENSCBRT00000013308 The ceh-23 gene encodes a homeodomain protein required for a specific differentiated trait of the thermosensory interneuron AIY. [Source: WormBase]The ceh-23 gene encodes a homeodomain protein required for a specific differentiated trait of the thermosensory interneuron AIY. [Source: WormBase] BY ORTHOLOGY TO:ZK652.5
16.8566 -17.05 0.000573544 1300 7 1 10 [+] picture button
CBG15804 ENSCBRT00000011329 T22H2.5 encodes a homolog of human scramblase (PLSCR1. OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis. closely related paralogs of T22H2.5 include C04E12.7 and ZK1053.5. [Source: WormBase]T22H2.5 encodes a homolog of human scramblase (PLSCR1. OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis. closely related paralogs of T22H2.5 include C04E12.7 and ZK1053.5. [Source: WormBase] BY ORTHOLOGY TO:T22H2.5b
16.3968 -17.7 0.000706443 1300 5 1 5 [+] picture button
CBG14328 ENSCBRT00000002756 R02E12.2a [Source:RefSeq_peptide;Acc:NP_001024819]R02E12.2a [Source:RefSeq_peptide;Acc:NP_001024819] BY ORTHOLOGY TO:R02E12.2a
16.7699 -24.88 0.00146944 1300 2 1 2 [+] picture button
CBG23009 ENSCBRT00000008843 CG1504-PA [Source:RefSeq_peptide;Acc:NP_608382]CG1504-PA [Source:RefSeq_peptide;Acc:NP_608382] BY ORTHOLOGY TO:CG1504-RA
16.3164 -22.87 0.00148041 1300 7 1 9 [+] picture button
CBG15313 ENSCBRT00000009585 Uncharacterized protein C2orf25, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q9H3L0]Uncharacterized protein C2orf25, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q9H3L0] BY ORTHOLOGY TO:ENST00000303319
15.9131 -20.11 0.00149576 1300 2 1 1 [+] picture button
CBG00495 ENSCBRT00000001925 mrp-8 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCC subfamily of ABC transporters that includes the multidrug resistance-associated proteins and the cystic fibrosis transmembrane conductance regulator. by homology, MRP-8 is predicted to function as an ATP-dependent organic anion transporter that transports molecules across the plasma membrane into the extracellular space. at present, the precise role of MRP-8 in C. elegans development and/or behavior is not yet known. [Source: WormBase]mrp-8 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCC subfamily of ABC transporters that includes the multidrug resistance-associated proteins and the cystic fibrosis transmembrane conductance regulator. by homology, MRP-8 is predicted to function as an ATP-dependent organic anion transporter that transports molecules across the plasma membrane into the extracellular space. at present, the precise role of MRP-8 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:Y75B8A.26
16.2314 -21.79 0.00158853 1300 1 1 1 [+] picture button
CBG12995 ENSCBRT00000012949 ZK1290.1 [Source:RefSeq_peptide;Acc:NP_495587]ZK1290.1 [Source:RefSeq_peptide;Acc:NP_495587] BY ORTHOLOGY TO:ZK1290.1
16.3116 -23.11 0.00172969 1300 3 2 3 [+] picture button
CBG12771 ENSCBRT00000013709 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL006882-RA
16.1705 -15.13 0.00178803 1300 3 1 4 [+] picture button
CBG21345 ENSCBRT00000000964 ZC434.3 [Source:RefSeq_peptide;Acc:NP_492710]ZC434.3 [Source:RefSeq_peptide;Acc:NP_492710] BY ORTHOLOGY TO:ZC434.3
17.3457 -17.98 0.00190466 1300 5 1 4 [+] picture button
CBG13040 ENSCBRT00000013011 Carbonic anhydrase-related protein 11 precursor (CA-XI) (CARP XI) (CA- RP XI) (Carbonic anhydrase-related protein 2) (CARP-2) (CA-RP II). [Source:Uniprot/SWISSPROT;Acc:O75493]Carbonic anhydrase-related protein 11 precursor (CA-XI) (CARP XI) (CA- RP XI) (Carbonic anhydrase-related protein 2) (CARP-2) (CA-RP II). [Source:Uniprot/SWISSPROT;Acc:O75493] BY ORTHOLOGY TO:ENST00000084798
16.4411 -20.4 0.0020083 1300 4 1 5 [+] picture button
CBG19309 ENSCBRT00000013506 F25B3.3 [Source:RefSeq_peptide;Acc:NP_505469]F25B3.3 [Source:RefSeq_peptide;Acc:NP_505469] BY ORTHOLOGY TO:F25B3.3
16.7448 -18.93 0.00201204 1300 2 1 2 [+] picture button
ENSCBRT00000008416 Putative folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma- glutamate synthetase) (FPGS) (Tetrahydrofolate synthase) (Tetrahydrofolylpolyglutamate synthase). [Source:Uniprot/SWISSPROT;Acc:Q09509]Putative folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma- glutamate synthetase) (FPGS) (Tetrahydrofolate synthase) (Tetrahydrofolylpolyglutamate synthase). [Source:Uniprot/SWISSPROT;Acc:Q09509] BY ORTHOLOGY TO:F25B5.6b
16.6563 -20.36 0.00241164 1300 4 2 4 [+] picture button
CBG03527 ENSCBRT00000006227 Y59H11AR.4 [Source:RefSeq_peptide;Acc:NP_501467]Y59H11AR.4 [Source:RefSeq_peptide;Acc:NP_501467] BY ORTHOLOGY TO:Y59H11AR.4
17.7723 -25.19 0.00241164 1300 2 1 3 [+] picture button
CBG03190 ENSCBRT00000006885 F46C5.2 [Source:RefSeq_peptide;Acc:NP_495881]F46C5.2 [Source:RefSeq_peptide;Acc:NP_495881] BY ORTHOLOGY TO:F46C5.2
16.0312 -20.51 0.00248122 1300 3 2 3 [+] picture button
CBG15739 ENSCBRT00000012060 ZC482.5 is orthologous to the human gene GAMMA-AMINOBUTYRIC ACID A RECEPTOR GAMMA 2 (GABRG2. OMIM:137164), which when mutated leads to disease. [Source: WormBase]ZC482.5 is orthologous to the human gene GAMMA-AMINOBUTYRIC ACID A RECEPTOR GAMMA 2 (GABRG2. OMIM:137164), which when mutated leads to disease. [Source: WormBase] BY ORTHOLOGY TO:ZC482.5
16.2961 -22.49 0.00265936 1300 5 1 7 [+] picture button
CBG04406 ENSCBRT00000008904 Thymidine kinase, cytosolic (EC 2.7.1.21). [Source:Uniprot/SWISSPROT;Acc:P04183]Thymidine kinase, cytosolic (EC 2.7.1.21). [Source:Uniprot/SWISSPROT;Acc:P04183] BY ORTHOLOGY TO:ENSORLT00000015402
15.9224 -20.3 0.00288809 1300 2 1 3 [+] picture button
CBG10369 ENSCBRT00000007861 Serpentine Receptor, class X family member (srx-5) [Source:RefSeq_peptide;Acc:NP_503299]Serpentine Receptor, class X family member (srx-5) [Source:RefSeq_peptide;Acc:NP_503299] BY ORTHOLOGY TO:Y49C4A.4
16.0324 -24.89 0.00301701 1300 5 1 6 [+] picture button
CBG16905 ENSCBRT00000012790 The hlh-8 gene encodes a helix-loop-helix protein required for normal muscle development, and hence for normal defecation and egg-laying. [Source: WormBase]The hlh-8 gene encodes a helix-loop-helix protein required for normal muscle development, and hence for normal defecation and egg-laying. [Source: WormBase] BY ORTHOLOGY TO:C02B8.4
15.9137 -19.28 0.00306878 1300 4 1 4 [+] picture button
CBG12408 ENSCBRT00000013154 fatty acid synthase [Source:MarkerSymbol;Acc:MGI:95485]fatty acid synthase [Source:MarkerSymbol;Acc:MGI:95485] BY ORTHOLOGY TO:ENSMUST00000055655
16.3013 -22.3 0.00309212 1300 3 2 4 [+] picture button
CBG23474 ENSCBRT00000011583 K01D12.5 [Source:RefSeq_peptide;Acc:NP_506104]K01D12.5 [Source:RefSeq_peptide;Acc:NP_506104] BY ORTHOLOGY TO:K01D12.5
16.0107 -18.26 0.0032148 1300 3 2 3 [+] picture button
CBG19152 ENSCBRT00000013392 F59E11.2 [Source:RefSeq_peptide;Acc:NP_505327]F59E11.2 [Source:RefSeq_peptide;Acc:NP_505327] BY ORTHOLOGY TO:F59E11.2
15.8273 -15.99 0.00369596 1300 4 1 4 [+] picture button
CBG15367 ENSCBRT00000010154 COLlagen family member (col-65) [Source:RefSeq_peptide;Acc:NP_492936]COLlagen family member (col-65) [Source:RefSeq_peptide;Acc:NP_492936] BY ORTHOLOGY TO:K08C9.4
15.7196 -21.96 0.00376887 1300 5 1 4 [+] picture button
CBG15588 ENSCBRT00000010692 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL001437-RA
16.0324 -18.89 0.00401112 1300 4 2 4 [+] picture button
CBG19383 ENSCBRT00000013565 Seven TM Receptor family member (str-2) [Source:RefSeq_peptide;Acc:NP_741602]Seven TM Receptor family member (str-2) [Source:RefSeq_peptide;Acc:NP_741602] BY ORTHOLOGY TO:C50C10.7
15.7481 -19.58 0.00402266 1300 4 1 4 [+] picture button
CBG10871 ENSCBRT00000001300 A homolog of a non-alpha type nicotinic acetylcholine receptor subunit that forms a functional channel when co-expressed with the unc-38 alpha subunit. [Source: WormBase]A homolog of a non-alpha type nicotinic acetylcholine receptor subunit that forms a functional channel when co-expressed with the unc-38 alpha subunit. [Source: WormBase] BY ORTHOLOGY TO:K11G12.2
15.536 -15.14 0.00443212 1300 5 1 6 [+] picture button
CBG00643 ENSCBRT00000003237 F49E12.10 [Source:RefSeq_peptide;Acc:NP_495764]F49E12.10 [Source:RefSeq_peptide;Acc:NP_495764] BY ORTHOLOGY TO:F49E12.10
15.3418 -15.76 0.00443212 1300 2 1 1 [+] picture button
CBG10272 ENSCBRT00000009537 T21B4.2 [Source:RefSeq_peptide;Acc:NP_496665]T21B4.2 [Source:RefSeq_peptide;Acc:NP_496665] BY ORTHOLOGY TO:T21B4.2
15.9827 -24.53 0.0048867 1300 4 1 3 [+] picture button
CBG22251 ENSCBRT00000003651 Uncharacterized protein KIAA0195 (Transmembrane protein 94). [Source:Uniprot/SWISSPROT;Acc:Q12767]Uncharacterized protein KIAA0195 (Transmembrane protein 94). [Source:Uniprot/SWISSPROT;Acc:Q12767] BY ORTHOLOGY TO:ENSXETT00000027393
15.9945 -21.27 0.00493017 1300 2 1 3 [+] picture button
CBG05117 ENSCBRT00000010291 grl-16 encodes, by alternative splicing, two hedgehog-like proteins with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase]grl-16 encodes, by alternative splicing, two hedgehog-like proteins with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase] BY ORTHOLOGY TO:Y65B4BR.6a
15.7734 -25.31 0.0049771 1300 1 2 1 [+] picture button
CBG16435 ENSCBRT00000011495 Ribonuclease H2 subunit B (RNase H2 subunit B) (Ribonuclease HI subunit B) (Aicardi-Goutieres syndrome 2 protein) (AGS2) (Deleted in lymphocytic leukemia 8). [Source:Uniprot/SWISSPROT;Acc:Q5TBB1]Ribonuclease H2 subunit B (RNase H2 subunit B) (Ribonuclease HI subunit B) (Aicardi-Goutieres syndrome 2 protein) (AGS2) (Deleted in lymphocytic leukemia 8). [Source:Uniprot/SWISSPROT;Acc:Q5TBB1] BY ORTHOLOGY TO:ENSMODT00000013750
15.631 -15.87 0.0050173 1300 2 1 3 [+] picture button
CBG14874 ENSCBRT00000004535 RING finger protein 139 (Translocation in renal carcinoma on chromosome 8). [Source:Uniprot/SWISSPROT;Acc:Q8WU17]RING finger protein 139 (Translocation in renal carcinoma on chromosome 8). [Source:Uniprot/SWISSPROT;Acc:Q8WU17] BY ORTHOLOGY TO:ENST00000303545
15.6473 -25.08 0.00512148 1300 5 2 5 [+] picture button
CBG11504 ENSCBRT00000013825 T01D3.3b [Source:RefSeq_peptide;Acc:NP_506389]T01D3.3b [Source:RefSeq_peptide;Acc:NP_506389] BY ORTHOLOGY TO:T01D3.3b
16.1077 -19.93 0.00518813 1300 3 2 5 [+] picture button
CBG14221 ENSCBRT00000002666 The protein product of sax-3 is homologous to Drosophila ROUNDABOUT. in larval hermaphrodites, SAX-3 is required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body. [Source: WormBase]The protein product of sax-3 is homologous to Drosophila ROUNDABOUT. in larval hermaphrodites, SAX-3 is required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body. [Source: WormBase] BY ORTHOLOGY TO:ZK377.2a
15.7423 -16.8 0.00542388 1300 4 2 5 [+] picture button
CBG07563 ENSCBRT00000011154 F54E4.2 [Source:RefSeq_peptide;Acc:NP_510432]F54E4.2 [Source:RefSeq_peptide;Acc:NP_510432] BY ORTHOLOGY TO:F54E4.2
15.6616 -20.54 0.00559587 1300 5 2 5 [+] picture button
CBG13202 ENSCBRT00000001116 T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458]T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458] BY ORTHOLOGY TO:T28D6.5b
15.5255 -17.41 0.00611302 1300 8 2 15 [+] picture button
CBG04133 ENSCBRT00000010145 Uncharacterized integrin beta-like protein C05D9.3 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9GYK2]Uncharacterized integrin beta-like protein C05D9.3 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9GYK2] BY ORTHOLOGY TO:C05D9.3
15.729 -17.2 0.00626578 1300 3 2 4 [+] picture button
CBG00637 ENSCBRT00000003238 F14E5.5 [Source:RefSeq_peptide;Acc:NP_495777]F14E5.5 [Source:RefSeq_peptide;Acc:NP_495777] BY ORTHOLOGY TO:F14E5.5
15.5255 -16.89 0.0064196 1300 4 1 6 [+] picture button
CBG22137 ENSCBRT00000004293 Semaphorin-2A precursor (Sema-2a) (Male abnormal protein 20). [Source:Uniprot/SWISSPROT;Acc:Q95XP4]Semaphorin-2A precursor (Sema-2a) (Male abnormal protein 20). [Source:Uniprot/SWISSPROT;Acc:Q95XP4] BY ORTHOLOGY TO:Y71G12B.20a
15.5267 -16.86 0.00684836 1300 4 2 5 [+] picture button
CBG21644 ENSCBRT00000004595 Regulatory-associated protein of mTOR (Raptor) (P150 target of rapamycin (TOR)-scaffold protein). [Source:Uniprot/SWISSPROT;Acc:Q8N122]Regulatory-associated protein of mTOR (Raptor) (P150 target of rapamycin (TOR)-scaffold protein). [Source:Uniprot/SWISSPROT;Acc:Q8N122] BY ORTHOLOGY TO:ENSMMUT00000017943
15.4539 -23.96 0.00698341 1300 2 1 2 [+] picture button
CBG17548 ENSCBRT00000002101 T21B6.2 [Source:RefSeq_peptide;Acc:NP_509828]T21B6.2 [Source:RefSeq_peptide;Acc:NP_509828] BY ORTHOLOGY TO:T21B6.2
15.4494 -17.27 0.00752733 1300 2 2 3 [+] picture button
CBG08513 ENSCBRT00000000272 Y48G8AL.9 [Source:RefSeq_peptide;Acc:NP_490824]Y48G8AL.9 [Source:RefSeq_peptide;Acc:NP_490824] BY ORTHOLOGY TO:Y48G8AL.9
15.3819 -18.11 0.00797609 1300 4 2 4 [+] picture button
CBG01350 ENSCBRT00000002202 F41H8.2 [Source:RefSeq_peptide;Acc:NP_503335]F41H8.2 [Source:RefSeq_peptide;Acc:NP_503335] BY ORTHOLOGY TO:F41H8.2
15.3315 -17.61 0.00875026 1300 1 1 3 [+] picture button
CBG01816 ENSCBRT00000002884 Cysteine-rich with EGF-like domain protein 2 precursor. [Source:Uniprot/SWISSPROT;Acc:Q6UXH1]Cysteine-rich with EGF-like domain protein 2 precursor. [Source:Uniprot/SWISSPROT;Acc:Q6UXH1] BY ORTHOLOGY TO:ENSCAFT00000001103
15.454 -19.65 0.00886543 1300 5 1 6 [+] picture button
CBG01673 ENSCBRT00000005560 F55F10.1 [Source:RefSeq_peptide;Acc:NP_500551]F55F10.1 [Source:RefSeq_peptide;Acc:NP_500551] BY ORTHOLOGY TO:F55F10.1
15.5348 -21.78 0.00887609 1300 4 2 4 [+] picture button
CBG23256 ENSCBRT00000012269 Uncharacterized aarF domain-containing protein kinase 1 precursor (EC 2.7.-.-). [Source:Uniprot/SWISSPROT;Acc:Q86TW2]Uncharacterized aarF domain-containing protein kinase 1 precursor (EC 2.7.-.-). [Source:Uniprot/SWISSPROT;Acc:Q86TW2] BY ORTHOLOGY TO:SINFRUT00000127853
15.3315 -12.76 0.00970713 1300 3 2 5 [+] picture button
CBG04461 ENSCBRT00000008956 F36G9.3 [Source:RefSeq_peptide;Acc:NP_506999]F36G9.3 [Source:RefSeq_peptide;Acc:NP_506999] BY ORTHOLOGY TO:F36G9.3
17.5751 -32.9 0.0105257 1300 6 1 9 [+] picture button
CBG18436 ENSCBRT00000000992 DNA replication licensing factor MCM2 (Minichromosome maintenance protein 2 homolog) (Nuclear protein BM28). [Source:Uniprot/SWISSPROT;Acc:P49736]DNA replication licensing factor MCM2 (Minichromosome maintenance protein 2 homolog) (Nuclear protein BM28). [Source:Uniprot/SWISSPROT;Acc:P49736] BY ORTHOLOGY TO:ENSGACT00000000041
17.5723 -17.93 0.0105552 1300 4 2 4 [+] picture button
CBG24087 ENSCBRT00000010775 Nuclear hormone receptor family member nhr-19. [Source:Uniprot/SWISSPROT;Acc:Q09528]Nuclear hormone receptor family member nhr-19. [Source:Uniprot/SWISSPROT;Acc:Q09528] BY ORTHOLOGY TO:E02H1.7
15.4827 -20.14 0.0107173 1300 6 2 11 [+] picture button
CBG02097 ENSCBRT00000004171 K02E10.1 [Source:RefSeq_peptide;Acc:NP_508455]K02E10.1 [Source:RefSeq_peptide;Acc:NP_508455] BY ORTHOLOGY TO:K02E10.1
17.5536 -25.5 0.0107552 1300 7 1 7 [+] picture button

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