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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-231

168 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG22418 ENSCBRT00000004926 Frizzled-5 precursor (Fz-5) (hFz5) (FzE5). [Source:Uniprot/SWISSPROT;Acc:Q13467]Frizzled-5 precursor (Fz-5) (hFz5) (FzE5). [Source:Uniprot/SWISSPROT;Acc:Q13467] BY ORTHOLOGY TO:ENSMMUT00000019170
19.2686 -19.74 0.000000253705 1300 8 1 15 [+] picture button
CBG21119 ENSCBRT00000000843 F42A10.3 [Source:RefSeq_peptide;Acc:NP_498334]F42A10.3 [Source:RefSeq_peptide;Acc:NP_498334] BY ORTHOLOGY TO:F42A10.3
17.8157 -27.72 0.0000706197 1300 2 2 2 [+] picture button
CBG02173 ENSCBRT00000004200 Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor). [Source:Uniprot/SWISSPROT;Acc:Q8N441]Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor). [Source:Uniprot/SWISSPROT;Acc:Q8N441] BY ORTHOLOGY TO:ENSOANT00000000414
16.6716 -22.31 0.000127187 1300 4 2 7 [+] picture button
CBG03987 ENSCBRT00000009959 inx-19 encodes a predicted member of the innexin family that affects body size and growth. [Source: WormBase]inx-19 encodes a predicted member of the innexin family that affects body size and growth. [Source: WormBase] BY ORTHOLOGY TO:T16H5.1a
17.0078 -26.11 0.000174121 1300 3 1 5 [+] picture button
CBG03778 ENSCBRT00000008638 Hypothetical LOC496519. [Source:Uniprot/SPTREMBL;Acc:Q5XGD9]Hypothetical LOC496519. [Source:Uniprot/SPTREMBL;Acc:Q5XGD9] BY ORTHOLOGY TO:ENSXETT00000056949
16.1265 -19.81 0.000381837 1300 3 1 3 [+] picture button
CBG12154 ENSCBRT00000013287 Y40B10A.9 [Source:RefSeq_peptide;Acc:NP_503563]Y40B10A.9 [Source:RefSeq_peptide;Acc:NP_503563] BY ORTHOLOGY TO:Y40B10A.9
15.365 -21.88 0.00044084 1300 4 2 5 [+] picture button
CBG12583 ENSCBRT00000014293 pantothenate kinase 4 [Source:MarkerSymbol;Acc:MGI:2387466]pantothenate kinase 4 [Source:MarkerSymbol;Acc:MGI:2387466] BY ORTHOLOGY TO:ENSMUST00000070953
15.8055 -19.47 0.000828096 1300 2 1 2 [+] picture button
CBG11853 ENSCBRT00000009307 dynein, cytoplasmic, heavy polypeptide 2 [Source:RefSeq_peptide;Acc:NP_001073932]dynein, cytoplasmic, heavy polypeptide 2 [Source:RefSeq_peptide;Acc:NP_001073932] BY ORTHOLOGY TO:ENST00000375735
15.7937 -21.21 0.000828665 1300 5 1 4 [+] picture button
CBG00465 ENSCBRT00000001908 39S ribosomal protein L40, mitochondrial precursor (L40mt) (MRP-40). [Source:Uniprot/SWISSPROT;Acc:P83565]39S ribosomal protein L40, mitochondrial precursor (L40mt) (MRP-40). [Source:Uniprot/SWISSPROT;Acc:P83565] BY ORTHOLOGY TO:ENSRNOT00000002604
16.2613 -24.1 0.00105729 1300 2 1 1 [+] picture button
CBG01967 ENSCBRT00000005839 ZC373.4 [Source:RefSeq_peptide;Acc:NP_509689]ZC373.4 [Source:RefSeq_peptide;Acc:NP_509689] BY ORTHOLOGY TO:ZC373.4
16.1721 -24.49 0.00143074 1300 3 2 4 [+] picture button
CBG15381 ENSCBRT00000010123 K11D2.2 is orthologous to the human gene N-ACYLSPHINGOSINE AMIDOHYDROLASE (ASAH. OMIM:228000), which when mutated leads to Farber lipogranulomatosis. [Source: WormBase]K11D2.2 is orthologous to the human gene N-ACYLSPHINGOSINE AMIDOHYDROLASE (ASAH. OMIM:228000), which when mutated leads to Farber lipogranulomatosis. [Source: WormBase] BY ORTHOLOGY TO:K11D2.2
15.7622 -20.75 0.00161102 1300 2 1 1 [+] picture button
CBG11208 ENSCBRT00000014416 C09B8.8 [Source:RefSeq_peptide;Acc:NP_741802]C09B8.8 [Source:RefSeq_peptide;Acc:NP_741802] BY ORTHOLOGY TO:C09B8.8
15.365 -22.1 0.00177233 1300 5 1 5 [+] picture button
CBG14514 ENSCBRT00000003468 ceh-1 encodes a protein that contains a homeobox domain. [Source: WormBase]ceh-1 encodes a protein that contains a homeobox domain. [Source: WormBase] BY ORTHOLOGY TO:F16H11.4
15.365 -16.53 0.00194409 1300 7 2 21 [+] picture button
CBG18491 ENSCBRT00000000950 C28C12.11 [Source:RefSeq_peptide;Acc:NP_501443]C28C12.11 [Source:RefSeq_peptide;Acc:NP_501443] BY ORTHOLOGY TO:C28C12.11
15.6891 -25.85 0.0019453 1300 4 1 3 [+] picture button
CBG02928 ENSCBRT00000006124 T24F1.4 [Source:RefSeq_peptide;Acc:NP_496418]T24F1.4 [Source:RefSeq_peptide;Acc:NP_496418] BY ORTHOLOGY TO:T24F1.4
15.365 -16.26 0.00224478 1300 3 2 3 [+] picture button
CBG01491 ENSCBRT00000001873 acr-16 encodes an alpha-7-like homomer-forming subunit of the nicotinic acetylcholine receptor (nAChR) superfamily orthologous to human nicotinic cholinergic receptor alpha 7 (CHRNA7. OMIM:118511. possibly associated with schizophrenia and juvenile myoclonic epilepsy). ACR-16 functions as a ligand-gated ion channel that probably regulates fast action of acetylcholine at neuromuscular junctions and in the nervous system. ACR-16 is active as a homomeric receptor and responds robustly to acetylcholine when expressed in Xenopus oocytes. [Source: WormBase]acr-16 encodes an alpha-7-like homomer-forming subunit of the nicotinic acetylcholine receptor (nAChR) superfamily orthologous to human nicotinic cholinergic receptor alpha 7 (CHRNA7. OMIM:118511. possibly associated with schizophrenia and juvenile myoclonic epilepsy). ACR-16 functions as a ligand-gated ion channel that probably regulates fast action of acetylcholine at neuromuscular junctions and in the nervous system. ACR-16 is active as a homomeric receptor and responds robustly to acetylcholine when expressed in Xenopus oocytes. [Source: WormBase] BY ORTHOLOGY TO:F25G6.3a
15.2901 -20.8 0.00226159 1300 4 2 4 [+] picture button
CBG10788 ENSCBRT00000012545 Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein A1U). [Source:Uniprot/SWISSPROT;Acc:Q9NRR5]Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein A1U). [Source:Uniprot/SWISSPROT;Acc:Q9NRR5] BY ORTHOLOGY TO:SINFRUT00000175183
15.2342 -13.51 0.00251166 1300 2 2 2 [+] picture button
CBG17272 ENSCBRT00000001235 T04F8.6 [Source:RefSeq_peptide;Acc:NP_509950]T04F8.6 [Source:RefSeq_peptide;Acc:NP_509950] BY ORTHOLOGY TO:T04F8.6
15.6726 -22.1 0.00267938 1300 5 2 6 [+] picture button
CBG06019 ENSCBRT00000008570 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q (EC 2.4.1.198) (Phosphatidylinositol-glycan biosynthesis class Q protein) (PIG-Q) (N-acetylglucosamyl transferase component GPI1). [Source:Uniprot/SWISSPROT;Acc:Q9BRB3]Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q (EC 2.4.1.198) (Phosphatidylinositol-glycan biosynthesis class Q protein) (PIG-Q) (N-acetylglucosamyl transferase component GPI1). [Source:Uniprot/SWISSPROT;Acc:Q9BRB3] BY ORTHOLOGY TO:ENSMMUT00000039721
17.3081 -22.67 0.00289754 1300 4 1 4 [+] picture button
CBG02513 ENSCBRT00000006475 ZK1248.13 [Source:RefSeq_peptide;Acc:NP_495158]ZK1248.13 [Source:RefSeq_peptide;Acc:NP_495158] BY ORTHOLOGY TO:ZK1248.13
15.0841 -22.07 0.00292972 1300 4 1 2 [+] picture button
CBG02446 ENSCBRT00000006538 T25E4.2 [Source:RefSeq_peptide;Acc:NP_495081]T25E4.2 [Source:RefSeq_peptide;Acc:NP_495081] BY ORTHOLOGY TO:T25E4.2
17.6843 -24.88 0.00351226 1300 2 1 2 [+] picture button
CBG13014 ENSCBRT00000012978 CG32066-PC, isoform C [Source:RefSeq_peptide;Acc:NP_729620]CG32066-PC, isoform C [Source:RefSeq_peptide;Acc:NP_729620] BY ORTHOLOGY TO:CG32066-RC
17.6843 -26.96 0.00351226 1300 5 2 6 [+] picture button
CBG13885 ENSCBRT00000013661 C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172]C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172] BY ORTHOLOGY TO:C54E4.4
14.8007 -15.7 0.00352131 1300 4 1 6 [+] picture button
CBG12638 ENSCBRT00000014357 WD repeat protein 47. [Source:Uniprot/SWISSPROT;Acc:O94967]WD repeat protein 47. [Source:Uniprot/SWISSPROT;Acc:O94967] BY ORTHOLOGY TO:ENSGALT00000003326
16.0587 -21.27 0.00434447 1300 3 1 3 [+] picture button
CBG02998 ENSCBRT00000006073 Origin recognition complex subunit 2. [Source:Uniprot/SWISSPROT;Acc:Q13416]Origin recognition complex subunit 2. [Source:Uniprot/SWISSPROT;Acc:Q13416] BY ORTHOLOGY TO:ENSGACT00000016560
14.6943 -14.07 0.0043663 1300 3 1 3 [+] picture button
CBG04246 ENSCBRT00000007653 TBC1 domain family member 20. [Source:Uniprot/SWISSPROT;Acc:Q96BZ9]TBC1 domain family member 20. [Source:Uniprot/SWISSPROT;Acc:Q96BZ9] BY ORTHOLOGY TO:ENST00000382121
14.8212 -20.14 0.0054062 1300 7 1 7 [+] picture button
CBG14092 ENSCBRT00000002551 COLlagen family member (col-164) [Source:RefSeq_peptide;Acc:NP_508386]COLlagen family member (col-164) [Source:RefSeq_peptide;Acc:NP_508386] BY ORTHOLOGY TO:T21D9.1
14.804 -21.66 0.00559633 1300 4 1 4 [+] picture button
CBG13271 ENSCBRT00000001064 Y66D12A.17 encodes a paralog of GFI-3 that, like GFI-3, is distantly similar to the human anaphase promoting complex subunit APC5. [Source: WormBase]Y66D12A.17 encodes a paralog of GFI-3 that, like GFI-3, is distantly similar to the human anaphase promoting complex subunit APC5. [Source: WormBase] BY ORTHOLOGY TO:Y66D12A.17
14.8007 -22.38 0.00563429 1300 9 2 11 [+] picture button
CBG06998 ENSCBRT00000012368 Activating signal cointegrator 1 complex subunit 1 (ASC-1 complex subunit p50) (Trip4 complex subunit p50). [Source:Uniprot/SWISSPROT;Acc:Q8N9N2]Activating signal cointegrator 1 complex subunit 1 (ASC-1 complex subunit p50) (Trip4 complex subunit p50). [Source:Uniprot/SWISSPROT;Acc:Q8N9N2] BY ORTHOLOGY TO:ENSXETT00000013525
14.8085 -28.05 0.00598477 1300 4 1 4 [+] picture button
CBG12311 ENSCBRT00000013198 F27C1.3 [Source:RefSeq_peptide;Acc:NP_491592]F27C1.3 [Source:RefSeq_peptide;Acc:NP_491592] BY ORTHOLOGY TO:F27C1.3
17.1563 -19.3 0.00622173 1300 3 1 4 [+] picture button
CBG08238 ENSCBRT00000003541 Rab3 GTPase-activating protein non-catalytic subunit (Rab3 GTPase- activating protein 150 kDa subunit) (Rab3-GAP p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150) (RGAP-iso). [Source:Uniprot/SWISSPROT;Acc:Q9H2M9]Rab3 GTPase-activating protein non-catalytic subunit (Rab3 GTPase- activating protein 150 kDa subunit) (Rab3-GAP p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150) (RGAP-iso). [Source:Uniprot/SWISSPROT;Acc:Q9H2M9] BY ORTHOLOGY TO:ENST00000358951
14.731 -13.61 0.00672454 1300 3 1 3 [+] picture button
CBG04521 ENSCBRT00000008789 F13E6.5 [Source:RefSeq_peptide;Acc:NP_509790]F13E6.5 [Source:RefSeq_peptide;Acc:NP_509790] BY ORTHOLOGY TO:F13E6.5
14.7175 -22.01 0.00695706 1300 3 2 4 [+] picture button
CBG05467 ENSCBRT00000004779 MIF (macrophage migration inhibitory factor) related family member (mif-4) [Source:RefSeq_peptide;Acc:NP_500968]MIF (macrophage migration inhibitory factor) related family member (mif-4) [Source:RefSeq_peptide;Acc:NP_500968] BY ORTHOLOGY TO:Y73B6BL.13
17.0347 -23.4 0.0070956 1300 4 1 4 [+] picture button
CBG01681 ENSCBRT00000005563 Seven TM Receptor family member (str-185) [Source:RefSeq_peptide;Acc:NP_500561]Seven TM Receptor family member (str-185) [Source:RefSeq_peptide;Acc:NP_500561] BY ORTHOLOGY TO:R08C7.7
17.0078 -17.81 0.00730444 1300 2 1 2 [+] picture button
CBG08253 ENSCBRT00000003508 GPI transamidase component PIG-U (Phosphatidylinositol-glycan biosynthesis class U protein) (Cell division cycle protein 91-like 1) (CDC91-like 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9H490]GPI transamidase component PIG-U (Phosphatidylinositol-glycan biosynthesis class U protein) (Cell division cycle protein 91-like 1) (CDC91-like 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9H490] BY ORTHOLOGY TO:ENSPTRT00000024932
14.7331 -11.78 0.00750494 1300 7 1 8 [+] picture button
CBG08710 ENSCBRT00000005284 T07D10.2 is orthologous to the human gene VASOPRESSIN RECEPTOR TYPE 2 (AVPR2. OMIM:304800), which when mutated leads to nephrogenic diabetes insipidus. [Source: WormBase]T07D10.2 is orthologous to the human gene VASOPRESSIN RECEPTOR TYPE 2 (AVPR2. OMIM:304800), which when mutated leads to nephrogenic diabetes insipidus. [Source: WormBase] BY ORTHOLOGY TO:T07D10.2
16.934 -25.59 0.00791052 1300 2 1 2 [+] picture button
CBG08572 ENSCBRT00000002844 L-xylulose reductase (EC 1.1.1.10) (XR) (Dicarbonyl/L-xylulose reductase) (Kidney dicarbonyl reductase) (kiDCR) (Carbonyl reductase II) (Sperm surface protein P34H). [Source:Uniprot/SWISSPROT;Acc:Q7Z4W1]L-xylulose reductase (EC 1.1.1.10) (XR) (Dicarbonyl/L-xylulose reductase) (Kidney dicarbonyl reductase) (kiDCR) (Carbonyl reductase II) (Sperm surface protein P34H). [Source:Uniprot/SWISSPROT;Acc:Q7Z4W1] BY ORTHOLOGY TO:ENSMMUT00000015254
14.7514 -17.52 0.00805736 1300 2 1 3 [+] picture button
CBG24150 ENSCBRT00000004069 T21D11.1 [Source:RefSeq_peptide;Acc:NP_498599]T21D11.1 [Source:RefSeq_peptide;Acc:NP_498599] BY ORTHOLOGY TO:T21D11.1
16.9112 -26.83 0.00810774 1300 4 2 6 [+] picture button
CBG09255 ENSCBRT00000006272 N-acetyltransferase 11 [Source:RefSeq_peptide;Acc:NP_079047]N-acetyltransferase 11 [Source:RefSeq_peptide;Acc:NP_079047] BY ORTHOLOGY TO:ENSGACT00000026253
16.9112 -19.17 0.00810774 1300 1 1 1 [+] picture button
CBG04051 ENSCBRT00000009899 W02D3.10a [Source:RefSeq_peptide;Acc:NP_001021652]W02D3.10a [Source:RefSeq_peptide;Acc:NP_001021652] BY ORTHOLOGY TO:W02D3.10a
15.401 -22 0.00835303 1300 1 1 1 [+] picture button
CBG18070 ENSCBRT00000003171 R01H2.4 [Source:RefSeq_peptide;Acc:NP_498538]R01H2.4 [Source:RefSeq_peptide;Acc:NP_498538] BY ORTHOLOGY TO:R01H2.4
14.5919 -21.34 0.00853433 1300 2 1 2 [+] picture button
CBG08048 ENSCBRT00000003776 phosphatidylinositol synthasephosphatidylinositol synthase BY ORTHOLOGY TO:AAEL014142-RA
14.7492 -12.99 0.00881253 1300 10 1 14 [+] picture button
CBG23347 ENSCBRT00000011461 Mannosyl-oligosaccharide 1,2-alpha-mannosidase C52E4.5 (EC 3.2.1.113) (Processing alpha-1,2-mannosidase C52E4.5) (Alpha-1,2-mannosidase C52E4.5). [Source:Uniprot/SWISSPROT;Acc:Q18788]Mannosyl-oligosaccharide 1,2-alpha-mannosidase C52E4.5 (EC 3.2.1.113) (Processing alpha-1,2-mannosidase C52E4.5) (Alpha-1,2-mannosidase C52E4.5). [Source:Uniprot/SWISSPROT;Acc:Q18788] BY ORTHOLOGY TO:C52E4.5
14.6612 -23.68 0.0093665 1300 7 2 12 [+] picture button
CBG09258 ENSCBRT00000006276 Y38A10A.2 [Source:RefSeq_peptide;Acc:NP_504570]Y38A10A.2 [Source:RefSeq_peptide;Acc:NP_504570] BY ORTHOLOGY TO:Y38A10A.2
14.5652 -14.41 0.00973992 1300 5 2 5 [+] picture button
CBG02454 ENSCBRT00000006529 C17G10.6a [Source:RefSeq_peptide;Acc:NP_001021970]C17G10.6a [Source:RefSeq_peptide;Acc:NP_001021970] BY ORTHOLOGY TO:C17G10.6a
16.7292 -27.7 0.00986623 1300 1 1 1 [+] picture button
CBG23702 ENSCBRT00000004147 Y39B6A.37 [Source:RefSeq_peptide;Acc:NP_741660]Y39B6A.37 [Source:RefSeq_peptide;Acc:NP_741660] BY ORTHOLOGY TO:Y39B6A.37
14.7253 -17.76 0.00987332 1300 4 1 4 [+] picture button
CBG03955 ENSCBRT00000009985 Homolog of Danio rerio "Similar to programmed cell death 6 [Source:IPI;Acc:IPI00490490]"Homolog of Danio rerio "Similar to programmed cell death 6 [Source:IPI;Acc:IPI00490490]" BY ORTHOLOGY TO:SINFRUT00000131090
16.7279 -16.47 0.00987955 1300 2 1 2 [+] picture button
CBG18111 ENSCBRT00000003267 Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44]Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44] BY ORTHOLOGY TO:ENSPTRT00000012973
14.8546 -22.21 0.0110135 1300 3 2 11 [+] picture button
CBG09476 ENSCBRT00000006260 F15B9.5 [Source:RefSeq_peptide;Acc:NP_506254]F15B9.5 [Source:RefSeq_peptide;Acc:NP_506254] BY ORTHOLOGY TO:F15B9.5
14.5895 -18.71 0.0110807 1300 7 2 14 [+] picture button
CBG06721 ENSCBRT00000009725 F53F1.2 [Source:RefSeq_peptide;Acc:NP_506322]F53F1.2 [Source:RefSeq_peptide;Acc:NP_506322] BY ORTHOLOGY TO:F53F1.2
16.6213 -22.51 0.0110812 1300 2 1 2 [+] picture button

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