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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-230

125 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG14753 ENSCBRT00000006771 F13D11.3 [Source:RefSeq_peptide;Acc:NP_508975]F13D11.3 [Source:RefSeq_peptide;Acc:NP_508975] BY ORTHOLOGY TO:F13D11.3
21.3846 -42.75 7.83345e-05 1300 2 1 2 [+] picture button
CBG08048 ENSCBRT00000003776 phosphatidylinositol synthasephosphatidylinositol synthase BY ORTHOLOGY TO:AAEL014142-RA
17.4222 -10.18 0.000215609 1300 10 1 14 [+] picture button
CBG14344 ENSCBRT00000002759 F09F9.2 [Source:RefSeq_peptide;Acc:NP_508698]F09F9.2 [Source:RefSeq_peptide;Acc:NP_508698] BY ORTHOLOGY TO:F09F9.2
16.314 -18.65 0.000808813 1300 4 2 5 [+] picture button
CBG03042 ENSCBRT00000007020 M28.6 [Source:RefSeq_peptide;Acc:NP_496299]M28.6 [Source:RefSeq_peptide;Acc:NP_496299] BY ORTHOLOGY TO:M28.6
15.9008 -16.62 0.00178763 1300 4 1 4 [+] picture button
CBG06809 ENSCBRT00000007435 glp-1 encodes an N-glycosylated transmembrane protein that, along with LIN-12, comprises one of two C. elegans members of the LIN-12/Notch family of receptors. from the N- to the C-terminus, GLP-1 is characterized by ten extracellular EGF-like repeats, three LIN-12/Notch repeats, a CC-linker, a transmembrane domain, a RAM domain, six intracellular ankyrin repeats, and a PEST sequence. in C. elegans, GLP-1 activity is required for cell fate specification in germline and somatic tissues. in the germline, GLP-1, acting as a receptor for the DSL family ligand LAG-2, is essential for mitotic proliferation of germ cells and maintenance of germline stem cells. in somatic tissues, maternally provided GLP-1, acting as a receptor for the DSL family ligand APX-1, is required for inductive interactions that specify the fates of certain embryonic blastomeres. GLP-1 is also required for some later embryonic cell fate decisions, and in these decisions its activity is functionally redundant with that of LIN-12. GLP-1 expression is regulated temporally and spatially via translational control, as GLP-1 mRNA, present ubiquitously in the germline and embryo, yields detectable protein solely in lateral, interior, and endomembranes of distal, mitotic germ cells, and then predominantly in the AB blastomere and its descendants in the early embryo. proper spatial translation of glp-1 mRNA in the embryo is dependent upon genes such as the par genes, that are required for normal anterior-posterior asymmetry in the early embryo. signaling through GLP-1 controls the activity of the downstream Notch pathway components LAG-3 and LAG-1, the latter being predicted to function as part of a transcriptional feedback mechanism that positively regulates GLP-1 expression. signaling through the DNA-binding protein LAG-1 is believed to involve a direct interaction between LAG-1 and the GLP-1 RAM and ankyrin domains [Source: WormBase]glp-1 encodes an N-glycosylated transmembrane protein that, along with LIN-12, comprises one of two C. elegans members of the LIN-12/Notch family of receptors. from the N- to the C-terminus, GLP-1 is characterized by ten extracellular EGF-like repeats, three LIN-12/Notch repeats, a CC-linker, a transmembrane domain, a RAM domain, six intracellular ankyrin repeats, and a PEST sequence. in C. elegans, GLP-1 activity is required for cell fate specification in germline and somatic tissues. in the germline, GLP-1, acting as a receptor for the DSL family ligand LAG-2, is essential for mitotic proliferation of germ cells and maintenance of germline stem cells. in somatic tissues, maternally provided GLP-1, acting as a receptor for the DSL family ligand APX-1, is required for inductive interactions that specify the fates of certain embryonic blastomeres. GLP-1 is also required for some later embryonic cell fate decisions, and in these decisions its activity is functionally redundant with that of LIN-12. GLP-1 expression is regulated temporally and spatially via translational control, as GLP-1 mRNA, present ubiquitously in the germline and embryo, yields detectable protein solely in lateral, interior, and endomembranes of distal, mitotic germ cells, and then predominantly in the AB blastomere and its descendants in the early embryo. proper spatial translation of glp-1 mRNA in the embryo is dependent upon genes such as the par genes, that are required for normal anterior-posterior asymmetry in the early embryo. signaling through GLP-1 controls the activity of the downstream Notch pathway components LAG-3 and LAG-1, the latter being predicted to function as part of a transcriptional feedback mechanism that positively regulates GLP-1 expression. signaling through the DNA-binding protein LAG-1 is believed to involve a direct interaction between LAG-1 and the GLP-1 RAM and ankyrin domains [Source: WormBase] BY ORTHOLOGY TO:F02A9.6
15.8187 -8.93 0.00225845 1300 2 1 2 [+] picture button
CBG05744 ENSCBRT00000009142 ZK381.5 encodes a homolog of Drosophila ESPINAS and PRICKLE, and of human PRICKLE1, PRICKLE2, and LMO6. ZK381.5 enables Wnt-directed planar cell polarity. ZK381.5 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]ZK381.5 encodes a homolog of Drosophila ESPINAS and PRICKLE, and of human PRICKLE1, PRICKLE2, and LMO6. ZK381.5 enables Wnt-directed planar cell polarity. ZK381.5 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase] BY ORTHOLOGY TO:ZK381.5b
16.1707 -10.95 0.00264947 1300 3 1 3 [+] picture button
CBG19044 ENSCBRT00000014023 Y57E12B.3 [Source:RefSeq_peptide;Acc:NP_504755]Y57E12B.3 [Source:RefSeq_peptide;Acc:NP_504755] BY ORTHOLOGY TO:Y57E12B.3
15.9695 -18.15 0.00267368 1300 1 2 1 [+] picture button
CBG21947 ENSCBRT00000008272 gpa-11 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADL and ASH amphid neurons. [Source: WormBase]gpa-11 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADL and ASH amphid neurons. [Source: WormBase] BY ORTHOLOGY TO:C16A11.1
15.7185 -10.57 0.00289152 1300 3 1 4 [+] picture button
CBG15930 ENSCBRT00000014268 F11C7.1 [Source:RefSeq_peptide;Acc:NP_510824]F11C7.1 [Source:RefSeq_peptide;Acc:NP_510824] BY ORTHOLOGY TO:F11C7.1
15.4315 -21.3 0.00296859 1300 5 1 4 [+] picture button
CBG01100 ENSCBRT00000005252 T21H3.4 [Source:RefSeq_peptide;Acc:NP_503385]T21H3.4 [Source:RefSeq_peptide;Acc:NP_503385] BY ORTHOLOGY TO:T21H3.4
17.4574 -17.95 0.003112 1300 3 1 2 [+] picture button
CBG06983 ENSCBRT00000012349 C50D2.1 [Source:RefSeq_peptide;Acc:NP_493663]C50D2.1 [Source:RefSeq_peptide;Acc:NP_493663] BY ORTHOLOGY TO:C50D2.1
16.2048 -27.19 0.00315652 1300 7 1 6 [+] picture button
CBG21118 ENSCBRT00000000846 Y42G9A.1 [Source:RefSeq_peptide;Acc:NP_498333]Y42G9A.1 [Source:RefSeq_peptide;Acc:NP_498333] BY ORTHOLOGY TO:Y42G9A.1
15.269 -12.94 0.00341085 1300 3 1 2 [+] picture button
CBG21567 ENSCBRT00000003822 Y57G11B.3 [Source:RefSeq_peptide;Acc:NP_502768]Y57G11B.3 [Source:RefSeq_peptide;Acc:NP_502768] BY ORTHOLOGY TO:Y57G11B.3
16.6485 -15.17 0.00349976 1300 1 2 1 [+] picture button
CBG01880 ENSCBRT00000005709 C16H3.3a [Source:RefSeq_peptide;Acc:NP_001024409]C16H3.3a [Source:RefSeq_peptide;Acc:NP_001024409] BY ORTHOLOGY TO:C16H3.3a
15.5739 -12.31 0.00383444 1300 3 1 5 [+] picture button
ENSCBRT00000001801 UBiquitin Conjugating enzyme family member (ubc-26) [Source:RefSeq_peptide;Acc:NP_871922]UBiquitin Conjugating enzyme family member (ubc-26) [Source:RefSeq_peptide;Acc:NP_871922] BY ORTHOLOGY TO:Y110A2AM.3
15.7809 -17.26 0.00398163 1300 4 1 4 [+] picture button
CBG03460 ENSCBRT00000007209 F32B6.9 [Source:RefSeq_peptide;Acc:NP_501784]F32B6.9 [Source:RefSeq_peptide;Acc:NP_501784] BY ORTHOLOGY TO:F32B6.9
15.485 -13.46 0.00401176 1300 3 1 2 [+] picture button
CBG03754 ENSCBRT00000008619 T05F1.9 [Source:RefSeq_peptide;Acc:NP_492562]T05F1.9 [Source:RefSeq_peptide;Acc:NP_492562] BY ORTHOLOGY TO:T05F1.9
15.485 -15.12 0.00401176 1300 5 1 4 [+] picture button
CBG19336 ENSCBRT00000013523 B0331.2 [Source:RefSeq_peptide;Acc:NP_505491]B0331.2 [Source:RefSeq_peptide;Acc:NP_505491] BY ORTHOLOGY TO:B0331.2
16.5308 -20.06 0.00421603 1300 3 1 3 [+] picture button
CBG05209 ENSCBRT00000002604 Immature colon carcinoma transcript 1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:Q3T116]Immature colon carcinoma transcript 1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:Q3T116] BY ORTHOLOGY TO:ENSBTAT00000004276
16.0435 -15.36 0.00427359 1300 4 1 4 [+] picture button
CBG24602 ENSCBRT00000000016 T-box transcription factor tbx-8. [Source:Uniprot/SWISSPROT;Acc:Q22292]T-box transcription factor tbx-8. [Source:Uniprot/SWISSPROT;Acc:Q22292] BY ORTHOLOGY TO:T07C4.2
15.2527 -14.54 0.0043414 1300 4 1 3 [+] picture button
CBG06891 ENSCBRT00000007354 Integrin alpha pat-2 precursor. [Source:Uniprot/SWISSPROT;Acc:P34446]Integrin alpha pat-2 precursor. [Source:Uniprot/SWISSPROT;Acc:P34446] BY ORTHOLOGY TO:F54F2.1
15.4204 -12.22 0.00578102 1300 7 2 9 [+] picture button
CBG05724 ENSCBRT00000009184 Y51H4A.25a [Source:RefSeq_peptide;Acc:NP_001023481]Y51H4A.25a [Source:RefSeq_peptide;Acc:NP_001023481] BY ORTHOLOGY TO:Y51H4A.25a
15.3315 -17.72 0.00581362 1300 2 1 2 [+] picture button
CBG24209 ENSCBRT00000005170 Serpentine Receptor, class H family member (srh-255) [Source:RefSeq_peptide;Acc:NP_001023867]Serpentine Receptor, class H family member (srh-255) [Source:RefSeq_peptide;Acc:NP_001023867] BY ORTHOLOGY TO:F28B1.8
15.3058 -16.98 0.00634643 1300 4 1 4 [+] picture button
CBG13226 ENSCBRT00000001095 Rad1 CG3240-PA [Source:RefSeq_peptide;Acc:NP_477440]Rad1 CG3240-PA [Source:RefSeq_peptide;Acc:NP_477440] BY ORTHOLOGY TO:CG3240-RA
17.4662 -19.26 0.0070454 1300 5 1 6 [+] picture button
CBG19042 ENSCBRT00000014049 unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion. unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure. UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals. the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site. UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half. unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). [Source: WormBase]unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion. unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure. UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals. the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site. UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half. unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). [Source: WormBase] BY ORTHOLOGY TO:K11C4.5
15.3315 -15.51 0.00777799 1300 4 2 8 [+] picture button
CBG01971 ENSCBRT00000005844 Dauer or Aging adult Overexpression family member (dao-4) [Source:RefSeq_peptide;Acc:NP_509691]Dauer or Aging adult Overexpression family member (dao-4) [Source:RefSeq_peptide;Acc:NP_509691] BY ORTHOLOGY TO:ZC373.6
15.3167 -15.86 0.00829889 1300 4 1 6 [+] picture button
CBG09716 ENSCBRT00000005692 DNA ligase 1 (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase [ATP] 1). [Source:Uniprot/SWISSPROT;Acc:Q9JHY8]DNA ligase 1 (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase [ATP] 1). [Source:Uniprot/SWISSPROT;Acc:Q9JHY8] BY ORTHOLOGY TO:ENSRNOT00000019799
15.1793 -7.54 0.0083879 1300 4 2 3 [+] picture button
CBG01423 ENSCBRT00000002484 Serpentine Receptor, class T family member (srt-13) [Source:RefSeq_peptide;Acc:NP_504173]Serpentine Receptor, class T family member (srt-13) [Source:RefSeq_peptide;Acc:NP_504173] BY ORTHOLOGY TO:ZC142.1
15.2772 -10.59 0.00861982 1300 3 1 3 [+] picture button
CBG19970 ENSCBRT00000002477 F36H12.1 [Source:RefSeq_peptide;Acc:NP_500770]F36H12.1 [Source:RefSeq_peptide;Acc:NP_500770] BY ORTHOLOGY TO:F36H12.1
15.1374 -18.07 0.00873789 1300 1 1 1 [+] picture button
CBG16599 ENSCBRT00000014551 W01B6.2 [Source:RefSeq_peptide;Acc:NP_501824]W01B6.2 [Source:RefSeq_peptide;Acc:NP_501824] BY ORTHOLOGY TO:W01B6.2
15.1276 -14.48 0.00891768 1300 2 1 3 [+] picture button
CBG18901 ENSCBRT00000014173 K12B6.3 [Source:RefSeq_peptide;Acc:NP_504604]K12B6.3 [Source:RefSeq_peptide;Acc:NP_504604] BY ORTHOLOGY TO:K12B6.3
15.1834 -14.23 0.00909419 1300 5 1 7 [+] picture button
CBG12154 ENSCBRT00000013287 Y40B10A.9 [Source:RefSeq_peptide;Acc:NP_503563]Y40B10A.9 [Source:RefSeq_peptide;Acc:NP_503563] BY ORTHOLOGY TO:Y40B10A.9
15.9137 -14.85 0.00938542 1300 4 2 5 [+] picture button
CBG14513 ENSCBRT00000003473 F16H11.3 [Source:RefSeq_peptide;Acc:NP_508795]F16H11.3 [Source:RefSeq_peptide;Acc:NP_508795] BY ORTHOLOGY TO:F16H11.3
15.1374 -9.44 0.00946666 1300 3 1 3 [+] picture button
CBG03783 ENSCBRT00000008637 C03C11.1 [Source:RefSeq_peptide;Acc:NP_492645]C03C11.1 [Source:RefSeq_peptide;Acc:NP_492645] BY ORTHOLOGY TO:C03C11.1
17.167 -9.97 0.00990987 1300 4 1 4 [+] picture button
CBG23164 ENSCBRT00000011938 Serpentine Receptor, class H family member (srh-46) [Source:RefSeq_peptide;Acc:NP_505871]Serpentine Receptor, class H family member (srh-46) [Source:RefSeq_peptide;Acc:NP_505871] BY ORTHOLOGY TO:T03F7.3
17.0781 -21.89 0.0109656 1300 2 1 2 [+] picture button
CBG12939 ENSCBRT00000013728 Y113G7A.5 [Source:RefSeq_peptide;Acc:NP_507870]Y113G7A.5 [Source:RefSeq_peptide;Acc:NP_507870] BY ORTHOLOGY TO:Y113G7A.5
16.0016 -10.5 0.0112888 1300 2 2 3 [+] picture button
CBG18146 ENSCBRT00000003319 cutC copper transporter homolog [Source:RefSeq_peptide;Acc:NP_001006503]cutC copper transporter homolog [Source:RefSeq_peptide;Acc:NP_001006503] BY ORTHOLOGY TO:ENSGALT00000012010
15.1805 -12.92 0.0115796 1300 6 1 6 [+] picture button
CBG22805 ENSCBRT00000004267 F18E9.3 [Source:RefSeq_peptide;Acc:NP_509455]F18E9.3 [Source:RefSeq_peptide;Acc:NP_509455] BY ORTHOLOGY TO:F18E9.3
16.9756 -21.45 0.0123197 1300 4 1 4 [+] picture button
CBG15944 ENSCBRT00000014225 rab-6.2 encodes a small, monomeric Rab GTPase that is most closely related to the Drosophila Rab6 and mammalian Rab6a GTPases. by homology, RAB-6.2 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis. however, as loss of rab-6.2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-6.2 in C. elegans development and/or behavior is not yet known. [Source: WormBase]rab-6.2 encodes a small, monomeric Rab GTPase that is most closely related to the Drosophila Rab6 and mammalian Rab6a GTPases. by homology, RAB-6.2 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis. however, as loss of rab-6.2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-6.2 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:T25G12.4
16.8603 -25.25 0.0140428 1300 8 2 8 [+] picture button
ENSCBRT00000001996 F56F4.2 [Source:RefSeq_peptide;Acc:NP_491772]F56F4.2 [Source:RefSeq_peptide;Acc:NP_491772] BY ORTHOLOGY TO:F56F4.2
16.8566 -16.18 0.0141015 1300 8 2 11 [+] picture button
CBG12224 ENSCBRT00000013241 Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (Protein phosphatase subunit G5PR) (Rhabdomyosarcoma antigen MU- RMS-40.6A) (Rhabdomyosarcoma antigen Mu-RMS-40.6C). [Source:Uniprot/SWISSPROT;Acc:Q969Q6]Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (Protein phosphatase subunit G5PR) (Rhabdomyosarcoma antigen MU- RMS-40.6A) (Rhabdomyosarcoma antigen Mu-RMS-40.6C). [Source:Uniprot/SWISSPROT;Acc:Q969Q6] BY ORTHOLOGY TO:ENSMODT00000016449
16.8246 -20.43 0.0146222 1300 2 1 2 [+] picture button
CBG17211 ENSCBRT00000000484 R07E3.3 [Source:RefSeq_peptide;Acc:NP_509734]R07E3.3 [Source:RefSeq_peptide;Acc:NP_509734] BY ORTHOLOGY TO:R07E3.3
16.787 -24.31 0.0152588 1300 1 1 1 [+] picture button
CBG22739 ENSCBRT00000004227 inx-5 encodes a predicted member of the innexin family. expressed in the embryonic hypodermis, developing vulva, seam cells, and spermatheca. [Source: WormBase]inx-5 encodes a predicted member of the innexin family. expressed in the embryonic hypodermis, developing vulva, seam cells, and spermatheca. [Source: WormBase] BY ORTHOLOGY TO:R09F10.4
16.7511 -18.96 0.0158914 1300 3 2 3 [+] picture button
CBG14793 ENSCBRT00000006745 klp-13 encodes an atypical kinesin-like motor protein similar to Saccharomyces cerevisiae Kip3, which has been implicated in nuclear migration. as loss of KLP-13 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of KLP-13 in C. elegans development and/or behavior is not yet known. [Source: WormBase]klp-13 encodes an atypical kinesin-like motor protein similar to Saccharomyces cerevisiae Kip3, which has been implicated in nuclear migration. as loss of KLP-13 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of KLP-13 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:F22F4.3
16.7435 -8.59 0.0160292 1300 3 1 4 [+] picture button
CBG03056 ENSCBRT00000007011 M28.1 [Source:RefSeq_peptide;Acc:NP_496293]M28.1 [Source:RefSeq_peptide;Acc:NP_496293] BY ORTHOLOGY TO:M28.1
16.6874 -12.76 0.0170777 1300 7 1 7 [+] picture button
CBG24042 ENSCBRT00000009806 F09F7.6 [Source:RefSeq_peptide;Acc:NP_498189]F09F7.6 [Source:RefSeq_peptide;Acc:NP_498189] BY ORTHOLOGY TO:F09F7.6
16.6706 -14.57 0.0174047 1300 1 1 1 [+] picture button
CBG00406 ENSCBRT00000001966 C30H6.8 [Source:RefSeq_peptide;Acc:NP_503101]C30H6.8 [Source:RefSeq_peptide;Acc:NP_503101] BY ORTHOLOGY TO:C30H6.8
16.6602 -17.3 0.0176115 1300 4 1 3 [+] picture button
CBG17684 ENSCBRT00000002259 phosphatidate cytidylyltransferasephosphatidate cytidylyltransferase BY ORTHOLOGY TO:AAEL001940-RA
16.6498 -18.3 0.017819 1300 3 2 5 [+] picture button
CBG00405 ENSCBRT00000001968 C30H6.7 [Source:RefSeq_peptide;Acc:NP_503100]C30H6.7 [Source:RefSeq_peptide;Acc:NP_503100] BY ORTHOLOGY TO:C30H6.7
16.6053 -17.3 0.0187364 1300 3 1 2 [+] picture button
CBG10233 ENSCBRT00000009533 Nuclear hormone receptor family member nhr-167. [Source:Uniprot/SWISSPROT;Acc:O17683]Nuclear hormone receptor family member nhr-167. [Source:Uniprot/SWISSPROT;Acc:O17683] BY ORTHOLOGY TO:C49F5.4
16.5384 -13.83 0.0202059 1300 3 1 3 [+] picture button

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