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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-1

147 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG07035 ENSCBRT00000012409 quinoid dihydropteridine reductase [Source:RefSeq_peptide;Acc:NP_001006566]quinoid dihydropteridine reductase [Source:RefSeq_peptide;Acc:NP_001006566] BY ORTHOLOGY TO:ENSGALT00000022647
16.3714 -15.66 1.15349e-05 1300 4 4 4 [+] picture button
CBG06223 ENSCBRT00000008251 Splicing factor 3A subunit 2 (Spliceosome-associated protein 62) (SAP 62) (SF3a66). [Source:Uniprot/SWISSPROT;Acc:Q15428]Splicing factor 3A subunit 2 (Spliceosome-associated protein 62) (SAP 62) (SF3a66). [Source:Uniprot/SWISSPROT;Acc:Q15428] BY ORTHOLOGY TO:ENSMMUT00000014114
15.8274 -19.44 2.25218e-05 1300 5 1 5 [+] picture button
CBG01752 ENSCBRT00000005623 Apoptotic protease-activating factor 1 (Apaf-1) (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q9GL23]Apoptotic protease-activating factor 1 (Apaf-1) (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q9GL23] BY ORTHOLOGY TO:ENSCAFT00000010576
17.5997 -19.53 3.78675e-05 1300 4 1 3 [+] picture button
CBG04016 ENSCBRT00000009933 cell division control proteincell division control protein BY ORTHOLOGY TO:AAEL004477-RA
15.5777 -19.33 6.06124e-05 1300 3 2 3 [+] picture button
CBG20203 ENSCBRT00000000812 KIAA1409 (KIAA1409), mRNA [Source:RefSeq_dna;Acc:NM_020818]KIAA1409 (KIAA1409), mRNA [Source:RefSeq_dna;Acc:NM_020818] BY ORTHOLOGY TO:ENST00000344699
15.6956 -17.51 0.000147572 1300 4 1 4 [+] picture button
CBG07111 ENSCBRT00000012100 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL011813-RA
16.2622 -17.01 0.000215957 1300 5 2 5 [+] picture button
CBG03139 ENSCBRT00000006938 VF13D12L.3 is orthologous to the human gene ARGININOSUCCINATE SYNTHETASE (ASS. OMIM:603470), which when mutated leads to classic citrullinemia. [Source: WormBase]VF13D12L.3 is orthologous to the human gene ARGININOSUCCINATE SYNTHETASE (ASS. OMIM:603470), which when mutated leads to classic citrullinemia. [Source: WormBase] BY ORTHOLOGY TO:VF13D12L.3
16.5221 -16.53 0.000235428 1300 4 1 4 [+] picture button
CBG04195 ENSCBRT00000007608 DNA-directed RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RPB7). [Source:Uniprot/SWISSPROT;Acc:P62487]DNA-directed RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RPB7). [Source:Uniprot/SWISSPROT;Acc:P62487] BY ORTHOLOGY TO:ENSORLT00000003931
16.033 -11.9 0.000330273 1300 2 1 10 [+] picture button
CBG08121 ENSCBRT00000003694 map-kinase activating death domain protein (madd)/denn/aex-3(c.elegans)map-kinase activating death domain protein (madd)/denn/aex-3(c.elegans) BY ORTHOLOGY TO:AAEL001442-RA
15.8692 -16.85 0.0004315 1300 5 1 6 [+] picture button
CBG00512 ENSCBRT00000003054 Translation initiation factor eIF-2B subunit epsilon (eIF-2B GDP-GTP exchange factor subunit epsilon). [Source:Uniprot/SWISSPROT;Acc:Q13144]Translation initiation factor eIF-2B subunit epsilon (eIF-2B GDP-GTP exchange factor subunit epsilon). [Source:Uniprot/SWISSPROT;Acc:Q13144] BY ORTHOLOGY TO:ENSMMUT00000009193
17.0764 -16.28 0.000469144 1300 4 1 5 [+] picture button
CBG15000 ENSCBRT00000004404 cka-1 encodes an isoform of choline kinase whose activity has been verified in vitro, and that has a strong preference for choline over ethanolamine. CKA-1 and CKA-2 comprise a related group ('A') of choline kinases. [Source: WormBase]cka-1 encodes an isoform of choline kinase whose activity has been verified in vitro, and that has a strong preference for choline over ethanolamine. CKA-1 and CKA-2 comprise a related group ('A') of choline kinases. [Source: WormBase] BY ORTHOLOGY TO:C28D4.2
17.2635 -17.18 0.000576052 1300 3 1 4 [+] picture button
CBG18230 ENSCBRT00000001705 3'-5' exoribonuclease CSL4 homolog (EC 3.1.13.-) (Exosome component 1). [Source:Uniprot/SWISSPROT;Acc:Q9Y3B2]3'-5' exoribonuclease CSL4 homolog (EC 3.1.13.-) (Exosome component 1). [Source:Uniprot/SWISSPROT;Acc:Q9Y3B2] BY ORTHOLOGY TO:ENSPTRT00000057521
15.6222 -18.28 0.00062071 1300 2 1 2 [+] picture button
CBG16362 ENSCBRT00000011249 phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:RefSeq_peptide;Acc:NP_001005473]phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:RefSeq_peptide;Acc:NP_001005473] BY ORTHOLOGY TO:ENST00000328457
15.9045 -12.64 0.000641042 1300 4 2 4 [+] picture button
CBG23110 ENSCBRT00000012022 CG6565-PA [Source:RefSeq_peptide;Acc:NP_609644]CG6565-PA [Source:RefSeq_peptide;Acc:NP_609644] BY ORTHOLOGY TO:CG6565-RA
15.6452 -14.38 0.000651468 1300 1 1 2 [+] picture button
CBG23894 ENSCBRT00000007909 Peroxisomal carnitine O-octanoyltransferase (EC 2.3.1.137) (COT). [Source:Uniprot/SWISSPROT;Acc:P11466]Peroxisomal carnitine O-octanoyltransferase (EC 2.3.1.137) (COT). [Source:Uniprot/SWISSPROT;Acc:P11466] BY ORTHOLOGY TO:ENSRNOT00000010060
15.7366 -17.18 0.00071835 1300 3 1 3 [+] picture button
CBG23249 ENSCBRT00000012258 Novel protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q1L9C5]Novel protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q1L9C5] BY ORTHOLOGY TO:ENSDART00000100063
15.6226 -15.67 0.000759843 1300 9 1 3 [+] picture button
CBG04077 ENSCBRT00000009861 SAC domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q92562]SAC domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q92562] BY ORTHOLOGY TO:SINFRUT00000168523
16.0554 -13.34 0.000803003 1300 3 2 3 [+] picture button
CBG03215 ENSCBRT00000006847 T21B10.3 [Source:RefSeq_peptide;Acc:NP_495901]T21B10.3 [Source:RefSeq_peptide;Acc:NP_495901] BY ORTHOLOGY TO:T21B10.3
16.7648 -19.67 0.00090311 1300 2 1 3 [+] picture button
ENSCBRT00000000512 CDK5 regulatory subunit associated protein 1-like 1 [Source:RefSeq_peptide;Acc:NP_060244]CDK5 regulatory subunit associated protein 1-like 1 [Source:RefSeq_peptide;Acc:NP_060244] BY ORTHOLOGY TO:ENST00000274695
15.8488 -16.2 0.000934508 1300 2 1 2 [+] picture button
CBG20835 ENSCBRT00000001303 solute carrier family 7, member 6 opposite strand [Source:RefSeq_peptide;Acc:NP_115554]solute carrier family 7, member 6 opposite strand [Source:RefSeq_peptide;Acc:NP_115554] BY ORTHOLOGY TO:ENSGACT00000018901
16.7254 -15.1 0.000972413 1300 2 1 3 [+] picture button
CBG22774 ENSCBRT00000004252 F16F9.4 [Source:RefSeq_peptide;Acc:NP_509437]F16F9.4 [Source:RefSeq_peptide;Acc:NP_509437] BY ORTHOLOGY TO:F16F9.4
16.7361 -17.09 0.0010445 1300 4 2 5 [+] picture button
CBG14471 ENSCBRT00000003533 F02E8.2a [Source:RefSeq_peptide;Acc:NP_001024524]F02E8.2a [Source:RefSeq_peptide;Acc:NP_001024524] BY ORTHOLOGY TO:F02E8.2b
17.046 -16.97 0.00109279 1300 1 1 2 [+] picture button
CBG15803 ENSCBRT00000011330 Furin precursor (EC 3.4.21.75) (Paired basic amino acid residue cleaving enzyme) (PACE) (Dibasic-processing enzyme). [Source:Uniprot/SWISSPROT;Acc:P09958]Furin precursor (EC 3.4.21.75) (Paired basic amino acid residue cleaving enzyme) (PACE) (Dibasic-processing enzyme). [Source:Uniprot/SWISSPROT;Acc:P09958] BY ORTHOLOGY TO:ENSPTRT00000013760
16.6802 -18.57 0.00116399 1300 5 1 5 [+] picture button
CBG00661 ENSCBRT00000003223 PUF (Pumilio/FBF) domain-containing family member (puf-5) [Source:RefSeq_peptide;Acc:NP_495814]PUF (Pumilio/FBF) domain-containing family member (puf-5) [Source:RefSeq_peptide;Acc:NP_495814] BY ORTHOLOGY TO:F54C9.8
16.5562 -15.6 0.00133716 1300 6 1 6 [+] picture button
CBG04128 ENSCBRT00000010048 crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase]crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase] BY ORTHOLOGY TO:Y23H5A.7b
16.9176 -18.46 0.00152362 1300 10 1 14 [+] picture button
CBG22507 ENSCBRT00000006029 selenoprotein [Source:MarkerSymbol;Acc:MGI:1927947]selenoprotein [Source:MarkerSymbol;Acc:MGI:1927947] BY ORTHOLOGY TO:ENSMUST00000082437
16.3058 -16.2 0.0015439 1300 3 1 4 [+] picture button
CBG10810 ENSCBRT00000012524 Intraflagellar transport 20 homolog (Intraflagellar transport protein 20) (hIFT20). [Source:Uniprot/SWISSPROT;Acc:Q8IY31]Intraflagellar transport 20 homolog (Intraflagellar transport protein 20) (hIFT20). [Source:Uniprot/SWISSPROT;Acc:Q8IY31] BY ORTHOLOGY TO:ENSBTAT00000010669
15.5659 -12.75 0.00167255 1300 2 1 5 [+] picture button
CBG23459 ENSCBRT00000011569 Vesicle-associated membrane protein 5 (VAMP-5) (Myobrevin). [Source:Uniprot/SWISSPROT;Acc:O95183]Vesicle-associated membrane protein 5 (VAMP-5) (Myobrevin). [Source:Uniprot/SWISSPROT;Acc:O95183] BY ORTHOLOGY TO:ENSPTRT00000022558
16.2512 -16.38 0.00168818 1300 5 1 6 [+] picture button
CBG14874 ENSCBRT00000004535 RING finger protein 139 (Translocation in renal carcinoma on chromosome 8). [Source:Uniprot/SWISSPROT;Acc:Q8WU17]RING finger protein 139 (Translocation in renal carcinoma on chromosome 8). [Source:Uniprot/SWISSPROT;Acc:Q8WU17] BY ORTHOLOGY TO:ENST00000303545
15.6888 -13.57 0.00203697 1300 5 2 5 [+] picture button
CBG14616 ENSCBRT00000003219 C31H2.1b [Source:RefSeq_peptide;Acc:NP_741779]C31H2.1b [Source:RefSeq_peptide;Acc:NP_741779] BY ORTHOLOGY TO:C31H2.1b
16.4408 -16.41 0.00207488 1300 3 2 4 [+] picture button
CBG12801 ENSCBRT00000013691 Tetratricopeptide repeat protein 1 (TPR repeat protein 1). [Source:Uniprot/SWISSPROT;Acc:Q99614]Tetratricopeptide repeat protein 1 (TPR repeat protein 1). [Source:Uniprot/SWISSPROT;Acc:Q99614] BY ORTHOLOGY TO:ENSMODT00000010168
18.2873 -20.55 0.00232634 1300 2 1 3 [+] picture button
CBG08329 ENSCBRT00000012959 Y69E1A.4 [Source:RefSeq_peptide;Acc:NP_502041]Y69E1A.4 [Source:RefSeq_peptide;Acc:NP_502041] BY ORTHOLOGY TO:Y69E1A.4
16.3338 -16.74 0.00235739 1300 6 2 6 [+] picture button
CBG06863 ENSCBRT00000007290 deoxycytidylate deaminasedeoxycytidylate deaminase BY ORTHOLOGY TO:AAEL014287-RA
16.2935 -16.09 0.00270502 1300 3 1 3 [+] picture button
CBG04317 ENSCBRT00000007687 C56C10.10 [Source:RefSeq_peptide;Acc:NP_495339]C56C10.10 [Source:RefSeq_peptide;Acc:NP_495339] BY ORTHOLOGY TO:C56C10.10
17.7049 -16.21 0.002927 1300 9 1 9 [+] picture button
CBG08048 ENSCBRT00000003776 phosphatidylinositol synthasephosphatidylinositol synthase BY ORTHOLOGY TO:AAEL014142-RA
16.0031 -9.66 0.00299117 1300 10 1 14 [+] picture button
CBG11735 ENSCBRT00000004108 Y22D7AR.6 [Source:RefSeq_peptide;Acc:NP_497443]Y22D7AR.6 [Source:RefSeq_peptide;Acc:NP_497443] BY ORTHOLOGY TO:Y22D7AR.6
16.1472 -17.67 0.00305412 1300 3 2 3 [+] picture button
CBG01078 ENSCBRT00000005238 C39F7.1 [Source:RefSeq_peptide;Acc:NP_503396]C39F7.1 [Source:RefSeq_peptide;Acc:NP_503396] BY ORTHOLOGY TO:C39F7.1
16.9426 -16.72 0.00332009 1300 6 1 6 [+] picture button
CBG17741 ENSCBRT00000000179 Dynactin subunit 4 (Dynactin subunit p62). [Source:Uniprot/SWISSPROT;Acc:Q9UJW0]Dynactin subunit 4 (Dynactin subunit p62). [Source:Uniprot/SWISSPROT;Acc:Q9UJW0] BY ORTHOLOGY TO:ENSGACT00000024350
16.0181 -14.43 0.00336454 1300 3 1 3 [+] picture button
CBG09606 ENSCBRT00000005859 F22E12.1 [Source:RefSeq_peptide;Acc:NP_505684]F22E12.1 [Source:RefSeq_peptide;Acc:NP_505684] BY ORTHOLOGY TO:F22E12.1
16.3827 -15.11 0.00361493 1300 4 1 4 [+] picture button
CBG06373 ENSCBRT00000010884 egl-8 encodes a phospholipase C beta homolog that affects pharyngeal pumping, defecation, and activity levels. it is genetically downstream of egl-30 with respect to aldicarb-induced paralysis, and is expressed in most or all neurons, with the strongest staining in the head and tail ganglia, and in the intestine. [Source: WormBase]egl-8 encodes a phospholipase C beta homolog that affects pharyngeal pumping, defecation, and activity levels. it is genetically downstream of egl-30 with respect to aldicarb-induced paralysis, and is expressed in most or all neurons, with the strongest staining in the head and tail ganglia, and in the intestine. [Source: WormBase] BY ORTHOLOGY TO:B0348.4a
16.2759 -17.78 0.00374721 1300 2 2 3 [+] picture button
ENSCBRT00000000276 T25D1.2 [Source:RefSeq_peptide;Acc:NP_510678]T25D1.2 [Source:RefSeq_peptide;Acc:NP_510678] BY ORTHOLOGY TO:T25D1.2
16.2593 -16.54 0.00385406 1300 8 1 12 [+] picture button
CBG06666 ENSCBRT00000009684 T27C4.2 [Source:RefSeq_peptide;Acc:NP_504035]T27C4.2 [Source:RefSeq_peptide;Acc:NP_504035] BY ORTHOLOGY TO:T27C4.2
18.2215 -22.48 0.00392353 1300 2 1 3 [+] picture button
CBG03046 ENSCBRT00000007019 M28.8 [Source:RefSeq_peptide;Acc:NP_496294]M28.8 [Source:RefSeq_peptide;Acc:NP_496294] BY ORTHOLOGY TO:M28.8
18.2092 -22.4 0.00398265 1300 1 1 2 [+] picture button
CBG00427 ENSCBRT00000001954 small nuclear ribonucleoprotein D3 polypeptide [Source:RefSeq_peptide;Acc:NP_001002081]small nuclear ribonucleoprotein D3 polypeptide [Source:RefSeq_peptide;Acc:NP_001002081] BY ORTHOLOGY TO:ENSDART00000018475
15.9195 -14.89 0.00408607 1300 3 1 3 [+] picture button
CBG21206 ENSCBRT00000000880 Putative ribosomal RNA methyltransferase 2 (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9UI43]Putative ribosomal RNA methyltransferase 2 (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9UI43] BY ORTHOLOGY TO:ENSGALT00000006743
16.0191 -13.79 0.00408743 1300 8 1 9 [+] picture button
CBG12008 ENSCBRT00000011723 Phosphatidylinositol-binding clathrin assembly protein LAP (Like- AP180). [Source:Uniprot/SWISSPROT;Acc:Q9VI75]Phosphatidylinositol-binding clathrin assembly protein LAP (Like- AP180). [Source:Uniprot/SWISSPROT;Acc:Q9VI75] BY ORTHOLOGY TO:CG2520-RA
15.8596 -14.95 0.00414664 1300 3 1 3 [+] picture button
CBG11639 ENSCBRT00000011428 Seven TM Receptor family member (str-161) [Source:RefSeq_peptide;Acc:NP_500668]Seven TM Receptor family member (str-161) [Source:RefSeq_peptide;Acc:NP_500668] BY ORTHOLOGY TO:T08B6.3
15.8507 -13.22 0.00423095 1300 4 1 4 [+] picture button
CBG23842 ENSCBRT00000006754 Ribonuclease P protein subunit p29 (EC 3.1.26.5) (hPOP4). [Source:Uniprot/SWISSPROT;Acc:O95707]Ribonuclease P protein subunit p29 (EC 3.1.26.5) (hPOP4). [Source:Uniprot/SWISSPROT;Acc:O95707] BY ORTHOLOGY TO:SINFRUT00000180571
16.1293 -16.72 0.00426276 1300 6 1 7 [+] picture button
CBG12802 ENSCBRT00000013694 protease, serine, 15 (Prss15), mRNA [Source:RefSeq_dna;Acc:NM_133404]protease, serine, 15 (Prss15), mRNA [Source:RefSeq_dna;Acc:NM_133404] BY ORTHOLOGY TO:ENSRNOT00000059542
17.8297 -20.55 0.00499119 1300 3 1 3 [+] picture button
CBG11418 ENSCBRT00000013980 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL013240-RA
15.7712 -14.12 0.00506102 1300 4 1 4 [+] picture button

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