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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-lsy-6

125 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG16360 ENSCBRT00000011248 carbonic anhydrase 2. [Source: WormBase]carbonic anhydrase 2. [Source: WormBase] BY ORTHOLOGY TO:K05G3.3
16.3202 -16.69 0.000990649 1300 4 1 2 [+] picture button
CBG00945 ENSCBRT00000004060 T26C5.4 [Source:RefSeq_peptide;Acc:NP_495971]T26C5.4 [Source:RefSeq_peptide;Acc:NP_495971] BY ORTHOLOGY TO:T26C5.4
16.2889 -10.09 0.00174873 1300 2 1 2 [+] picture button
CBG03189 ENSCBRT00000006884 Zinc metalloproteinase nas-25 precursor (EC 3.4.24.21) (Nematode astacin 25). [Source:Uniprot/SWISSPROT;Acc:Q20459]Zinc metalloproteinase nas-25 precursor (EC 3.4.24.21) (Nematode astacin 25). [Source:Uniprot/SWISSPROT;Acc:Q20459] BY ORTHOLOGY TO:F46C5.3
15.8419 -10.24 0.00235955 1300 8 2 8 [+] picture button
CBG18014 ENSCBRT00000003050 Temporarily Assigned Gene name family member (tag-243) [Source:RefSeq_peptide;Acc:NP_497957]Temporarily Assigned Gene name family member (tag-243) [Source:RefSeq_peptide;Acc:NP_497957] BY ORTHOLOGY TO:T04A8.4
15.6915 -14.19 0.00263627 1300 6 1 5 [+] picture button
CBG12270 ENSCBRT00000013325 Uncharacterized protein C02C2.5. [Source:Uniprot/SWISSPROT;Acc:P34273]Uncharacterized protein C02C2.5. [Source:Uniprot/SWISSPROT;Acc:P34273] BY ORTHOLOGY TO:C02C2.5
16.0291 -12.25 0.00264093 1300 5 1 5 [+] picture button
CBG00891 ENSCBRT00000003949 R05H5.3 [Source:RefSeq_peptide;Acc:NP_496200]R05H5.3 [Source:RefSeq_peptide;Acc:NP_496200] BY ORTHOLOGY TO:R05H5.3
18.3859 -20.88 0.00311899 1300 2 1 2 [+] picture button
CBG03566 ENSCBRT00000006604 Phosphatidylinositol 4-kinase alpha (EC 2.7.1.67) (PI4-kinase alpha) (PtdIns-4-kinase alpha) (PI4K-alpha). [Source:Uniprot/SWISSPROT;Acc:P42356]Phosphatidylinositol 4-kinase alpha (EC 2.7.1.67) (PI4-kinase alpha) (PtdIns-4-kinase alpha) (PI4K-alpha). [Source:Uniprot/SWISSPROT;Acc:P42356] BY ORTHOLOGY TO:ENST00000255882
16.3141 -12.5 0.00316604 1300 4 1 3 [+] picture button
CBG01442 ENSCBRT00000002528 Y45G5AM.7 [Source:RefSeq_peptide;Acc:NP_504160]Y45G5AM.7 [Source:RefSeq_peptide;Acc:NP_504160] BY ORTHOLOGY TO:Y45G5AM.7
15.5964 -15.61 0.00325718 1300 3 1 3 [+] picture button
CBG11342 ENSCBRT00000014368 D1014.2 [Source:RefSeq_peptide;Acc:NP_505101]D1014.2 [Source:RefSeq_peptide;Acc:NP_505101] BY ORTHOLOGY TO:D1014.2
16.0638 -17.57 0.00403283 1300 3 1 3 [+] picture button
CBG00514 ENSCBRT00000003055 Autophagy-related protein 10 (APG10-like). [Source:Uniprot/SWISSPROT;Acc:Q9H0Y0]Autophagy-related protein 10 (APG10-like). [Source:Uniprot/SWISSPROT;Acc:Q9H0Y0] BY ORTHOLOGY TO:ENSPTRT00000031598
15.8005 -15.79 0.00443437 1300 1 1 1 [+] picture button
CBG03154 ENSCBRT00000006911 The rol-6 gene encodes a cuticle collagen related to human collagen alpha 1 (III) chain precursor (OMIM:120180), and is required for normal cuticular morphology. ROL-6 interacts with SQT-1, a closely related cuticle collagen, and is expressed at all stages from L2 to adult with transcripts detected at each of the molts preceding these stages. [Source: WormBase]The rol-6 gene encodes a cuticle collagen related to human collagen alpha 1 (III) chain precursor (OMIM:120180), and is required for normal cuticular morphology. ROL-6 interacts with SQT-1, a closely related cuticle collagen, and is expressed at all stages from L2 to adult with transcripts detected at each of the molts preceding these stages. [Source: WormBase] BY ORTHOLOGY TO:T01B7.7
15.7162 -19.11 0.00507515 1300 3 1 3 [+] picture button
CBG08143 ENSCBRT00000003745 F13C5.3 [Source:RefSeq_peptide;Acc:NP_508125]F13C5.3 [Source:RefSeq_peptide;Acc:NP_508125] BY ORTHOLOGY TO:F13C5.3
15.6733 -8.96 0.00535549 1300 4 1 3 [+] picture button
CBG19356 ENSCBRT00000013535 Seven TM Receptor family member (str-188) [Source:RefSeq_peptide;Acc:NP_505504]Seven TM Receptor family member (str-188) [Source:RefSeq_peptide;Acc:NP_505504] BY ORTHOLOGY TO:F40F9.4
15.6638 -17.36 0.00546832 1300 2 1 2 [+] picture button
CBG17403 ENSCBRT00000001177 C34F6.2 [Source:RefSeq_peptide;Acc:NP_509869]C34F6.2 [Source:RefSeq_peptide;Acc:NP_509869] BY ORTHOLOGY TO:C34F6.2
15.604 -17.68 0.00667605 1300 3 1 3 [+] picture button
CBG05030 ENSCBRT00000010228 T07H6.4 [Source:RefSeq_peptide;Acc:NP_509052]T07H6.4 [Source:RefSeq_peptide;Acc:NP_509052] BY ORTHOLOGY TO:T07H6.4
16.1533 -18.8 0.00688071 1300 4 2 5 [+] picture button
CBG23748 ENSCBRT00000004485 Y110A7A.2 [Source:RefSeq_peptide;Acc:NP_491534]Y110A7A.2 [Source:RefSeq_peptide;Acc:NP_491534] BY ORTHOLOGY TO:Y110A7A.2
15.7188 -6.68 0.00713983 1300 4 1 5 [+] picture button
CBG14247 ENSCBRT00000002690 Glutathione S-Transferase family member (gst-11) [Source:RefSeq_peptide;Acc:NP_508625]Glutathione S-Transferase family member (gst-11) [Source:RefSeq_peptide;Acc:NP_508625] BY ORTHOLOGY TO:R11G1.3
15.58 -13.71 0.0073875 1300 3 2 4 [+] picture button
CBG05971 ENSCBRT00000009046 F13H10.5 [Source:RefSeq_peptide;Acc:NP_502049]F13H10.5 [Source:RefSeq_peptide;Acc:NP_502049] BY ORTHOLOGY TO:F13H10.5
15.4889 -9.4 0.00800748 1300 4 1 4 [+] picture button
CBG07184 ENSCBRT00000012224 Y51H7C.9 [Source:RefSeq_peptide;Acc:NP_493968]Y51H7C.9 [Source:RefSeq_peptide;Acc:NP_493968] BY ORTHOLOGY TO:Y51H7C.9
15.4877 -11.12 0.0080295 1300 6 1 7 [+] picture button
CBG21917 ENSCBRT00000008208 Adenylosuccinate lyase. [Source:Uniprot/SPTREMBL;Acc:Q6GLC2]Adenylosuccinate lyase. [Source:Uniprot/SPTREMBL;Acc:Q6GLC2] BY ORTHOLOGY TO:ENSXETT00000013869
17.5694 -18.48 0.00820181 1300 3 1 3 [+] picture button
ENSCBRT00000010975 K04F1.7 [Source:RefSeq_peptide;Acc:NP_503476]K04F1.7 [Source:RefSeq_peptide;Acc:NP_503476] BY ORTHOLOGY TO:K04F1.7
15.5107 -11.12 0.00851612 1300 3 1 3 [+] picture button
CBG21734 ENSCBRT00000004562 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL004211-RA
15.6457 -16.97 0.00853147 1300 4 1 4 [+] picture button
CBG06004 ENSCBRT00000008542 M7.7 [Source:RefSeq_peptide;Acc:NP_502068]M7.7 [Source:RefSeq_peptide;Acc:NP_502068] BY ORTHOLOGY TO:M7.7
17.5237 -20.3 0.00865676 1300 1 1 1 [+] picture button
CBG07008 ENSCBRT00000012384 F23F1.2 [Source:RefSeq_peptide;Acc:NP_493641]F23F1.2 [Source:RefSeq_peptide;Acc:NP_493641] BY ORTHOLOGY TO:F23F1.2
15.468 -12.41 0.00920111 1300 5 1 5 [+] picture button
CBG19423 ENSCBRT00000012814 Uncharacterized protein C20orf72. [Source:Uniprot/SWISSPROT;Acc:Q9BQP7]Uncharacterized protein C20orf72. [Source:Uniprot/SWISSPROT;Acc:Q9BQP7] BY ORTHOLOGY TO:ENSMMUT00000016070
15.4903 -11.52 0.00972045 1300 2 1 2 [+] picture button
CBG15769 ENSCBRT00000012114 Toxin-regulated Target of p38MAPK family member (ttm-1) [Source:RefSeq_peptide;Acc:NP_499691]Toxin-regulated Target of p38MAPK family member (ttm-1) [Source:RefSeq_peptide;Acc:NP_499691] BY ORTHOLOGY TO:Y39E4A.2b
17.3711 -12.56 0.0103636 1300 5 1 11 [+] picture button
CBG02231 ENSCBRT00000004961 Temporarily Assigned Gene name family member (tag-68) [Source:RefSeq_peptide;Acc:NP_492746]Temporarily Assigned Gene name family member (tag-68) [Source:RefSeq_peptide;Acc:NP_492746] BY ORTHOLOGY TO:F37D6.6
17.2993 -20.78 0.0112778 1300 4 2 5 [+] picture button
CBG01450 ENSCBRT00000001901 ZC190.2 [Source:RefSeq_peptide;Acc:NP_505236]ZC190.2 [Source:RefSeq_peptide;Acc:NP_505236] BY ORTHOLOGY TO:ZC190.2
17.2605 -14.59 0.0118049 1300 5 1 8 [+] picture button
CBG17001 ENSCBRT00000011910 T28A11.2 [Source:RefSeq_peptide;Acc:NP_503906]T28A11.2 [Source:RefSeq_peptide;Acc:NP_503906] BY ORTHOLOGY TO:T28A11.2
17.1341 -19.99 0.0136951 1300 2 1 4 [+] picture button
CBG01027 ENSCBRT00000002111 Putative cytochrome P450 CYP13A6 (EC 1.14.-.-). [Source:Uniprot/SWISSPROT;Acc:Q27515]Putative cytochrome P450 CYP13A6 (EC 1.14.-.-). [Source:Uniprot/SWISSPROT;Acc:Q27515] BY ORTHOLOGY TO:T10B9.3
17.1323 -19.45 0.0137247 1300 2 1 2 [+] picture button
CBG16382 ENSCBRT00000011240 cadherin, putativecadherin, putative BY ORTHOLOGY TO:AAEL007299-RA
17.0972 -16.35 0.0143021 1300 3 1 3 [+] picture button
CBG12469 ENSCBRT00000013195 COLlagen family member (col-118) [Source:RefSeq_peptide;Acc:NP_501532]COLlagen family member (col-118) [Source:RefSeq_peptide;Acc:NP_501532] BY ORTHOLOGY TO:T11B7.3
17.0795 -13.51 0.0146015 1300 7 1 11 [+] picture button
CBG00374 ENSCBRT00000001989 T28F3.8 [Source:RefSeq_peptide;Acc:NP_503075]T28F3.8 [Source:RefSeq_peptide;Acc:NP_503075] BY ORTHOLOGY TO:T28F3.8
17.0604 -18.38 0.0149315 1300 3 1 3 [+] picture button
CBG10723 ENSCBRT00000012480 W03B1.8 [Source:RefSeq_peptide;Acc:NP_500546]W03B1.8 [Source:RefSeq_peptide;Acc:NP_500546] BY ORTHOLOGY TO:W03B1.8
17.0397 -21.77 0.0152993 1300 11 2 12 [+] picture button
CBG05229 ENSCBRT00000003916 R03G8.3 [Source:RefSeq_peptide;Acc:NP_510174]R03G8.3 [Source:RefSeq_peptide;Acc:NP_510174] BY ORTHOLOGY TO:R03G8.3
17.0344 -21.22 0.015395 1300 2 1 2 [+] picture button
CBG19340 ENSCBRT00000013528 Homolog of Homo sapiens "Splice Isoform Beta of Tissue factor pathway inhibitor precursor [Source:IPI;Acc:IPI00218184]"Homolog of Homo sapiens "Splice Isoform Beta of Tissue factor pathway inhibitor precursor [Source:IPI;Acc:IPI00218184]" BY ORTHOLOGY TO:SINFRUT00000129274
17.0301 -12.56 0.0154721 1300 2 2 2 [+] picture button
CBG02165 ENSCBRT00000011982 act-2 encodes an invertebrate actin that may function specifically in the pharynx. [Source: WormBase]act-2 encodes an invertebrate actin that may function specifically in the pharynx. [Source: WormBase] BY ORTHOLOGY TO:T04C12.5
16.9365 -20.75 0.0172649 1300 4 1 4 [+] picture button
CBG07598 ENSCBRT00000011122 Dipeptidyl peptidase family member 2 (EC 3.4.14.-). [Source:Uniprot/SWISSPROT;Acc:Q18253]Dipeptidyl peptidase family member 2 (EC 3.4.14.-). [Source:Uniprot/SWISSPROT;Acc:Q18253] BY ORTHOLOGY TO:C27C12.7
16.8767 -14.65 0.0185135 1300 6 1 8 [+] picture button
CBG03597 ENSCBRT00000006573 ZK1058.6 [Source:RefSeq_peptide;Acc:NP_497791]ZK1058.6 [Source:RefSeq_peptide;Acc:NP_497791] BY ORTHOLOGY TO:ZK1058.6
16.8386 -21.41 0.0193574 1300 5 1 6 [+] picture button
CBG19410 ENSCBRT00000012803 Protein RMI1 homolog (75 kDa BLM-associated protein) (BLAP75) (FAAP75). [Source:Uniprot/SWISSPROT;Acc:Q9H9A7]Protein RMI1 homolog (75 kDa BLM-associated protein) (BLAP75) (FAAP75). [Source:Uniprot/SWISSPROT;Acc:Q9H9A7] BY ORTHOLOGY TO:ENSCAFT00000002145
16.8386 -17.46 0.0193574 1300 3 1 3 [+] picture button
CBG17901 ENSCBRT00000000445 Nuclear Hormone Receptor family member (nhr-131) [Source:RefSeq_peptide;Acc:NP_503221]Nuclear Hormone Receptor family member (nhr-131) [Source:RefSeq_peptide;Acc:NP_503221] BY ORTHOLOGY TO:T01G6.2
16.7521 -12.57 0.0214118 1300 3 1 3 [+] picture button
CBG00938 ENSCBRT00000004058 Regulator of HYpoxia-inducible factor (hif-1) family member (rhy-1) [Source:RefSeq_peptide;Acc:NP_495954]Regulator of HYpoxia-inducible factor (hif-1) family member (rhy-1) [Source:RefSeq_peptide;Acc:NP_495954] BY ORTHOLOGY TO:W07A12.7
16.7433 -14.68 0.0216306 1300 1 1 1 [+] picture button
CBG03414 ENSCBRT00000007176 glt-3 encodes an ortholog of glutamate/aspartate and neutral amino acid transporters. [Source: WormBase]glt-3 encodes an ortholog of glutamate/aspartate and neutral amino acid transporters. [Source: WormBase] BY ORTHOLOGY TO:K08F4.4
16.6889 -7.66 0.023044 1300 7 1 10 [+] picture button
CBG12696 ENSCBRT00000014343 SCY1-like 2 (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1289172]SCY1-like 2 (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1289172] BY ORTHOLOGY TO:ENSMUST00000092227
16.6619 -17.65 0.0237799 1300 3 1 6 [+] picture button
CBG22096 ENSCBRT00000004318 CDNA FLJ46511 fis, clone THYMU3031868. [Source:Uniprot/SPTREMBL;Acc:Q6ZRB0]CDNA FLJ46511 fis, clone THYMU3031868. [Source:Uniprot/SPTREMBL;Acc:Q6ZRB0] BY ORTHOLOGY TO:ENSXETT00000039285
16.6615 -11.99 0.0237924 1300 4 1 11 [+] picture button
CBG12331 ENSCBRT00000013088 K07F5.8 [Source:RefSeq_peptide;Acc:NP_501766]K07F5.8 [Source:RefSeq_peptide;Acc:NP_501766] BY ORTHOLOGY TO:K07F5.8
16.6467 -18.32 0.0242023 1300 6 1 6 [+] picture button
CBG02208 ENSCBRT00000004965 ribosomal protein L30 [Source:RefSeq_peptide;Acc:NP_956322]ribosomal protein L30 [Source:RefSeq_peptide;Acc:NP_956322] BY ORTHOLOGY TO:ENSDART00000052082
16.6428 -20.97 0.0243142 1300 4 1 3 [+] picture button
CBG08775 ENSCBRT00000000580 Phosphoethanolamine MethyTransferase family member (pmt-2) [Source:RefSeq_peptide;Acc:NP_504248]Phosphoethanolamine MethyTransferase family member (pmt-2) [Source:RefSeq_peptide;Acc:NP_504248] BY ORTHOLOGY TO:F54D11.1
16.6284 -9.53 0.0247222 1300 3 1 3 [+] picture button
CBG04636 ENSCBRT00000010530 F47B8.6 [Source:RefSeq_peptide;Acc:NP_506552]F47B8.6 [Source:RefSeq_peptide;Acc:NP_506552] BY ORTHOLOGY TO:F47B8.6
16.5788 -15.82 0.0261885 1300 7 1 9 [+] picture button
CBG17739 ENSCBRT00000000175 C26B2.7 [Source:RefSeq_peptide;Acc:NP_501342]C26B2.7 [Source:RefSeq_peptide;Acc:NP_501342] BY ORTHOLOGY TO:C26B2.7
16.5742 -17.19 0.0263289 1300 6 2 7 [+] picture button

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Download table: GFF TXT
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