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Target Listing




Highlighted rows in the table indicate genes with published known targets


All miRNA hits for Caenorhabditis briggsae

6639 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG06810 ENSCBRT00000007439 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 2) (MCCase subunit beta) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta) (3- methylcrotonyl-CoA carboxylase non-biotin-containing [Source:Uniprot/SWISSPROT;Acc:Q9HCC0]Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 2) (MCCase subunit beta) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta) (3- methylcrotonyl-CoA carboxylase non-biotin-containing [Source:Uniprot/SWISSPROT;Acc:Q9HCC0] BY ORTHOLOGY TO:ENSMMUT00000021284
64 -80 0.0000000324234 1300 4 1 4 [+] picture button
CBG22418 ENSCBRT00000004926 Frizzled-5 precursor (Fz-5) (hFz5) (FzE5). [Source:Uniprot/SWISSPROT;Acc:Q13467]Frizzled-5 precursor (Fz-5) (hFz5) (FzE5). [Source:Uniprot/SWISSPROT;Acc:Q13467] BY ORTHOLOGY TO:ENSMMUT00000019170
137 -146 0.000000253705 1300 8 1 15 [+] picture button
CBG00748 ENSCBRT00000000741 SUMO/sentrin specific peptidase 6 [Source:MarkerSymbol;Acc:MGI:1922075]SUMO/sentrin specific peptidase 6 [Source:MarkerSymbol;Acc:MGI:1922075] BY ORTHOLOGY TO:ENSMUST00000093810
48 -58 0.000000290653 1300 3 1 3 [+] picture button
CBG12227 ENSCBRT00000013238 fatty acid 2-hydroxylase [Source:RefSeq_peptide;Acc:NP_077282]fatty acid 2-hydroxylase [Source:RefSeq_peptide;Acc:NP_077282] BY ORTHOLOGY TO:ENST00000219368
65 -76 0.000000410379 1300 4 2 8 [+] picture button
CBG23204 ENSCBRT00000012159 CG9850-PB, isoform B [Source:RefSeq_peptide;Acc:NP_001027572]CG9850-PB, isoform B [Source:RefSeq_peptide;Acc:NP_001027572] BY ORTHOLOGY TO:CG9850-RA
59 -78 0.000000610449 1300 4 2 3 [+] picture button
CBG08854 ENSCBRT00000000531 T19H12.6 [Source:RefSeq_peptide;Acc:NP_504305]T19H12.6 [Source:RefSeq_peptide;Acc:NP_504305] BY ORTHOLOGY TO:T19H12.6
80 -72 0.000001 1300 5 1 3 [+] picture button
CBG18499 ENSCBRT00000000952 SaPosin-like Protein family member (spp-8) [Source:RefSeq_peptide;Acc:NP_501447]SaPosin-like Protein family member (spp-8) [Source:RefSeq_peptide;Acc:NP_501447] BY ORTHOLOGY TO:C28C12.5
77 -103 0.000001 1300 5 1 2 [+] picture button
CBG20702 ENSCBRT00000001402 F46B3.9 [Source:RefSeq_peptide;Acc:NP_507980]F46B3.9 [Source:RefSeq_peptide;Acc:NP_507980] BY ORTHOLOGY TO:F46B3.9
106 -140 0.000001 1300 7 1 3 [+] picture button
CBG20729 ENSCBRT00000001477 Nuclear Hormone Receptor family member (nhr-170) [Source:RefSeq_peptide;Acc:NP_507673]Nuclear Hormone Receptor family member (nhr-170) [Source:RefSeq_peptide;Acc:NP_507673] BY ORTHOLOGY TO:C54E10.5
108 -120 0.000001 1300 7 1 9 [+] picture button
CBG00462 ENSCBRT00000001909 Transcription elongation factor SPT4 (DRB sensitivity-inducing factor small subunit) (DSIF small subunit). [Source:Uniprot/SWISSPROT;Acc:Q3SYX6]Transcription elongation factor SPT4 (DRB sensitivity-inducing factor small subunit) (DSIF small subunit). [Source:Uniprot/SWISSPROT;Acc:Q3SYX6] BY ORTHOLOGY TO:ENSBTAT00000004389
96 -94 0.000001 1300 6 1 3 [+] picture button
CBG19917 ENSCBRT00000002440 T12E12.6 [Source:RefSeq_peptide;Acc:NP_500831]T12E12.6 [Source:RefSeq_peptide;Acc:NP_500831] BY ORTHOLOGY TO:T12E12.6
71 -142 0.000001 1300 4 1 3 [+] picture button
CBG21461 ENSCBRT00000002721 Membralin. [Source:Uniprot/SWISSPROT;Acc:Q4ZIN3]Membralin. [Source:Uniprot/SWISSPROT;Acc:Q4ZIN3] BY ORTHOLOGY TO:ENSORLT00000000131
57 -48 0.000001 1300 4 1 1 [+] picture button
CBG00936 ENSCBRT00000004057 hypothetical protein LOC525027 [Source:RefSeq_peptide;Acc:NP_001029725]hypothetical protein LOC525027 [Source:RefSeq_peptide;Acc:NP_001029725] BY ORTHOLOGY TO:ENSBTAT00000049264
128 -153 0.000001 1300 8 1 5 [+] picture button
CBG05460 ENSCBRT00000004771 voltage-gated potassium channelvoltage-gated potassium channel BY ORTHOLOGY TO:AAEL007104-RA
91 -140 0.000001 1300 6 1 8 [+] picture button
CBG02562 ENSCBRT00000007565 R12C12.9a [Source:RefSeq_peptide;Acc:NP_495203]R12C12.9a [Source:RefSeq_peptide;Acc:NP_495203] BY ORTHOLOGY TO:R12C12.9b
111 -141 0.000001 1300 7 2 5 [+] picture button
CBG24641 ENSCBRT00000007716 ZK524.4 [Source:RefSeq_peptide;Acc:NP_492097]ZK524.4 [Source:RefSeq_peptide;Acc:NP_492097] BY ORTHOLOGY TO:ZK524.4
134 -93 0.000001 1300 8 1 7 [+] picture button
CBG21974 ENSCBRT00000008254 F31D5.5 [Source:RefSeq_peptide;Acc:NP_494739]F31D5.5 [Source:RefSeq_peptide;Acc:NP_494739] BY ORTHOLOGY TO:F31D5.5
206 -285 0.000001 1300 13 1 6 [+] picture button
CBG23021 ENSCBRT00000008855 Tax1 (Human T-cell leukemia virus type I) binding protein 3. [Source:Uniprot/SPTREMBL;Acc:Q6P4W4]Tax1 (Human T-cell leukemia virus type I) binding protein 3. [Source:Uniprot/SPTREMBL;Acc:Q6P4W4] BY ORTHOLOGY TO:ENSXETT00000012770
101 -135 0.000001 1300 6 1 3 [+] picture button
CBG24747 ENSCBRT00000008972 T06A1.1 [Source:RefSeq_peptide;Acc:NP_503533]T06A1.1 [Source:RefSeq_peptide;Acc:NP_503533] BY ORTHOLOGY TO:T06A1.1
141 -107 0.000001 1300 9 1 13 [+] picture button
CBG05954 ENSCBRT00000009029 ZK596.3 [Source:RefSeq_peptide;Acc:NP_502027]ZK596.3 [Source:RefSeq_peptide;Acc:NP_502027] BY ORTHOLOGY TO:ZK596.3
79 -96 0.000001 1300 5 1 3 [+] picture button
CBG24024 ENSCBRT00000009776 Serpentine Receptor, class H family member (srh-278) [Source:RefSeq_peptide;Acc:NP_506743]Serpentine Receptor, class H family member (srh-278) [Source:RefSeq_peptide;Acc:NP_506743] BY ORTHOLOGY TO:T09F5.8
65 -85 0.000001 1300 4 1 3 [+] picture button
CBG04128 ENSCBRT00000010048 crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase]crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase] BY ORTHOLOGY TO:Y23H5A.7b
170 -158 0.000001 1300 10 1 14 [+] picture button
CBG15379 ENSCBRT00000010130 F32B4.2 [Source:RefSeq_peptide;Acc:NP_492941]F32B4.2 [Source:RefSeq_peptide;Acc:NP_492941] BY ORTHOLOGY TO:F32B4.2
67 -63 0.000001 1300 4 1 1 [+] picture button
CBG05005 ENSCBRT00000010218 C14F11.2 [Source:RefSeq_peptide;Acc:NP_509042]C14F11.2 [Source:RefSeq_peptide;Acc:NP_509042] BY ORTHOLOGY TO:C14F11.2
92 -113 0.000001 1300 6 2 2 [+] picture button
CBG15195 ENSCBRT00000010374 Y40D12A.2 [Source:RefSeq_peptide;Acc:NP_498460]Y40D12A.2 [Source:RefSeq_peptide;Acc:NP_498460] BY ORTHOLOGY TO:Y40D12A.2
77 -108 0.000001 1300 5 1 2 [+] picture button
CBG04554 ENSCBRT00000010451 Y50E8A.7 [Source:RefSeq_peptide;Acc:NP_506641]Y50E8A.7 [Source:RefSeq_peptide;Acc:NP_506641] BY ORTHOLOGY TO:Y50E8A.7
140 -203 0.000001 1300 9 2 9 [+] picture button
CBG15840 ENSCBRT00000011313 Translation initiation factor eIF-2B subunit beta (eIF-2B GDP-GTP exchange factor subunit beta) (S20I15) (S20III15). [Source:Uniprot/SWISSPROT;Acc:P49770]Translation initiation factor eIF-2B subunit beta (eIF-2B GDP-GTP exchange factor subunit beta) (S20I15) (S20III15). [Source:Uniprot/SWISSPROT;Acc:P49770] BY ORTHOLOGY TO:ENSOANT00000013802
120 -169 0.000001 1300 7 1 2 [+] picture button
CBG11920 ENSCBRT00000011775 C15A11.4 [Source:RefSeq_peptide;Acc:NP_492089]C15A11.4 [Source:RefSeq_peptide;Acc:NP_492089] BY ORTHOLOGY TO:C15A11.4
63 -79 0.000001 1300 4 1 2 [+] picture button
CBG23249 ENSCBRT00000012258 Novel protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q1L9C5]Novel protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q1L9C5] BY ORTHOLOGY TO:ENSDART00000100063
137 -204 0.000001 1300 9 1 3 [+] picture button
CBG10723 ENSCBRT00000012480 W03B1.8 [Source:RefSeq_peptide;Acc:NP_500546]W03B1.8 [Source:RefSeq_peptide;Acc:NP_500546] BY ORTHOLOGY TO:W03B1.8
163 -209 0.000001 1300 11 2 12 [+] picture button
CBG16137 ENSCBRT00000012576 Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937]Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937] BY ORTHOLOGY TO:B0272.1
50 -52 0.000001 1300 3 1 4 [+] picture button
CBG19036 ENSCBRT00000014065 T19F4.1 encodes, by alternative splicing, two G-protein coupled receptors for the flp-2-encoded peptides SPREPIRFamide (FLP2-A) and LRGEPIRFamide (FLP2-B). T19F4.1B protein has an extension of 30 residues more than T19F4.1A in the intracellular C-terminal region. activation of either T19F4.1A or T19F4.1B is temperature-independent, and T19F4.1A/B are probably linked to the G(q) pathway. [Source: WormBase]T19F4.1 encodes, by alternative splicing, two G-protein coupled receptors for the flp-2-encoded peptides SPREPIRFamide (FLP2-A) and LRGEPIRFamide (FLP2-B). T19F4.1B protein has an extension of 30 residues more than T19F4.1A in the intracellular C-terminal region. activation of either T19F4.1A or T19F4.1B is temperature-independent, and T19F4.1A/B are probably linked to the G(q) pathway. [Source: WormBase] BY ORTHOLOGY TO:T19F4.1b
57 -112 0.000001 1300 4 1 1 [+] picture button
CBG15992 ENSCBRT00000014246 mec-5 encodes a collagen unique in the number of Gly-X-Y repeats and in the composition of amino acids surrounding these repeats. MEC-5 is required for normal mechanosensory response to gentle touch and for the proper functioning of the touch receptor neurons. mec-5 interacts genetically with mec-4 and mec-10 which encode degenerins (ion channels) expressed in the touch neurons, mec-9, which encodes a protein containing EGF-like and Kunitz/protease inhibitor domains secreted by the touch neurons, and mec-12, which encodes an alpha-tubulin expressed in the touch neurons. these genetic interactions suggest that MEC-5 may play a role in anchoring the degenerin complex to the extracellular matrix. MEC-5 is produced and secreted by hypodermal cells. [Source: WormBase]mec-5 encodes a collagen unique in the number of Gly-X-Y repeats and in the composition of amino acids surrounding these repeats. MEC-5 is required for normal mechanosensory response to gentle touch and for the proper functioning of the touch receptor neurons. mec-5 interacts genetically with mec-4 and mec-10 which encode degenerins (ion channels) expressed in the touch neurons, mec-9, which encodes a protein containing EGF-like and Kunitz/protease inhibitor domains secreted by the touch neurons, and mec-12, which encodes an alpha-tubulin expressed in the touch neurons. these genetic interactions suggest that MEC-5 may play a role in anchoring the degenerin complex to the extracellular matrix. MEC-5 is produced and secreted by hypodermal cells. [Source: WormBase] BY ORTHOLOGY TO:E03G2.3
62 -70 0.000001 1300 4 1 1 [+] picture button
CBG03187 ENSCBRT00000006887 F46C5.1 [Source:RefSeq_peptide;Acc:NP_495879]F46C5.1 [Source:RefSeq_peptide;Acc:NP_495879] BY ORTHOLOGY TO:F46C5.1
48 -64 0.00000161123 1300 3 2 3 [+] picture button
CBG15106 ENSCBRT00000010263 PET112-like (yeast) [Source:MarkerSymbol;Acc:MGI:2442496]PET112-like (yeast) [Source:MarkerSymbol;Acc:MGI:2442496] BY ORTHOLOGY TO:ENSMUST00000029726
47 -56 0.00000207584 1300 3 1 2 [+] picture button
CBG07437 ENSCBRT00000011094 H06A10.1 [Source:RefSeq_peptide;Acc:NP_510255]H06A10.1 [Source:RefSeq_peptide;Acc:NP_510255] BY ORTHOLOGY TO:H06A10.1
74 -103 0.00000356914 1300 5 2 3 [+] picture button
CBG21225 ENSCBRT00000000864 lis-1 encodes an ortholog of human LIS1, which when mutated leads to lissencephaly (OMIM:247200). it also encodes an ortholog of the Aspergillus nidulans nudF, which mediates nuclear migration along Aspergillus hyphae. [Source: WormBase]lis-1 encodes an ortholog of human LIS1, which when mutated leads to lissencephaly (OMIM:247200). it also encodes an ortholog of the Aspergillus nidulans nudF, which mediates nuclear migration along Aspergillus hyphae. [Source: WormBase] BY ORTHOLOGY TO:T03F6.5
76 -88 0.00000428061 1300 5 2 7 [+] picture button
CBG09083 ENSCBRT00000008337 DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta). [Source:Uniprot/SWISSPROT;Acc:O75417]DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta). [Source:Uniprot/SWISSPROT;Acc:O75417] BY ORTHOLOGY TO:ENST00000264233
31 -37 0.00000483273 1300 2 1 3 [+] picture button
CBG08426 ENSCBRT00000012885 COP9 signalosome complex subunit 4 (Signalosome subunit 4) (SGN4) (JAB1-containing signalosome subunit 4). [Source:Uniprot/SWISSPROT;Acc:Q9BT78]COP9 signalosome complex subunit 4 (Signalosome subunit 4) (SGN4) (JAB1-containing signalosome subunit 4). [Source:Uniprot/SWISSPROT;Acc:Q9BT78] BY ORTHOLOGY TO:ENSORLT00000002398
64 -71 0.00000595344 1300 4 2 6 [+] picture button
CBG02939 ENSCBRT00000006117 T05B9.2 [Source:RefSeq_peptide;Acc:NP_496408]T05B9.2 [Source:RefSeq_peptide;Acc:NP_496408] BY ORTHOLOGY TO:T05B9.2
45 -52 0.00000639684 1300 3 2 5 [+] picture button
CBG01952 ENSCBRT00000005822 mannosyl-oligosaccharide alpha-1,2-mannosidase, putativemannosyl-oligosaccharide alpha-1,2-mannosidase, putative BY ORTHOLOGY TO:AAEL002645-RA
47 -57 0.00000658368 1300 3 1 3 [+] picture button
CBG14977 ENSCBRT00000004443 Presenilins-associated rhomboid-like protein, mitochondrial precursor (EC 3.4.21.105) (Mitochondrial intramembrane cleaving protease PARL) [Contains: P-beta (Pbeta)]. [Source:Uniprot/SWISSPROT;Acc:Q9H300]Presenilins-associated rhomboid-like protein, mitochondrial precursor (EC 3.4.21.105) (Mitochondrial intramembrane cleaving protease PARL) [Contains: P-beta (Pbeta)]. [Source:Uniprot/SWISSPROT;Acc:Q9H300] BY ORTHOLOGY TO:SINFRUT00000131501
16 -20 0.00000769587 1300 1 3 1 [+] picture button
CBG22475 ENSCBRT00000005123 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL000336-RA
79 -80 0.00000797556 1300 5 1 6 [+] picture button
CBG07703 ENSCBRT00000010668 molybdenum cofactor sulfurase [Source:MarkerSymbol;Acc:MGI:1915841]molybdenum cofactor sulfurase [Source:MarkerSymbol;Acc:MGI:1915841] BY ORTHOLOGY TO:ENSMUST00000068006
142 -177 0.00000803718 1300 9 1 9 [+] picture button
CBG04574 ENSCBRT00000010472 Cyclin-K. [Source:Uniprot/SWISSPROT;Acc:O75909]Cyclin-K. [Source:Uniprot/SWISSPROT;Acc:O75909] BY ORTHOLOGY TO:SINFRUT00000128804
31 -33 0.00000809588 1300 2 1 2 [+] picture button
CBG02828 ENSCBRT00000006246 CLASS C ACETYLCHOLINESTERASE (EC 3.1.1.7). [Source:SPTREMBL;Acc:Q9NDG9]
46 -51 0.00000986267 1300 3 2 3 [+] picture button
CBG12139 ENSCBRT00000013296 TropoNin T family member (tnt-4) [Source:RefSeq_peptide;Acc:NP_503544]TropoNin T family member (tnt-4) [Source:RefSeq_peptide;Acc:NP_503544] BY ORTHOLOGY TO:T08B1.2a
53 -76 0.000010532 1300 3 1 4 [+] picture button
CBG07035 ENSCBRT00000012409 quinoid dihydropteridine reductase [Source:RefSeq_peptide;Acc:NP_001006566]quinoid dihydropteridine reductase [Source:RefSeq_peptide;Acc:NP_001006566] BY ORTHOLOGY TO:ENSGALT00000022647
64 -79 0.0000115349 1300 4 4 4 [+] picture button
CBG16572 ENSCBRT00000014572 F37A4.5 [Source:RefSeq_peptide;Acc:NP_498470]F37A4.5 [Source:RefSeq_peptide;Acc:NP_498470] BY ORTHOLOGY TO:F37A4.5
92 -105 0.0000118228 1300 6 1 5 [+] picture button
CBG15673 ENSCBRT00000011956 H14E04.2b [Source:RefSeq_peptide;Acc:NP_497544]H14E04.2b [Source:RefSeq_peptide;Acc:NP_497544] BY ORTHOLOGY TO:H14E04.2d
51 -69 0.000013248 1300 3 1 7 [+] picture button

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