ID X96982; SV 1; circular; genomic DNA; STD; PRO; 4104 BP. XX AC X96982; XX DT 09-APR-1996 (Rel. 47, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Acidithiobacillus ferrooxidans pTF4.1 plasmid complete genome XX KW complete genome. XX OS Acidithiobacillus ferrooxidans OC Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; OC Acidithiobacillaceae; Acidithiobacillus. OG Plasmid pTF4.1 XX RN [1] RA Pramila T., Rao C.D., Rao G.R.; RT "Complete nucleotide sequence of pTF4.1, a 4.1 kb plasmid from Thiobacillus RT ferrooxidans"; RL Unpublished. XX RN [2] RP 1-4104 RA Pramila T.; RT ; RL Submitted (27-MAR-1996) to the INSDC. RL T. Pramila, Department of Microbiology and Cell Biology, Indian Institute RL of Science, Bangalore - 12, INDIA XX FH Key Location/Qualifiers FH FT source 1..4104 FT /organism="Acidithiobacillus ferrooxidans" FT /plasmid="pTF4.1" FT /strain="MAL4-1" FT /mol_type="genomic DNA" FT /db_xref="taxon:920" FT CDS 326..691 FT /transl_table=11 FT /note="ORF4" FT /db_xref="InterPro:IPR008687" FT /db_xref="UniProtKB/TrEMBL:Q56293" FT /protein_id="CAA65682.1" FT /translation="MASGSETRQRQAALRIRLTAAEHATITAASERAGLSLAGYARSQL FT LSAPPVRQARRPPVERAELARLLAELGKIGSNVNQIAHALNGGGDAVPSDLASVQADIA FT AIRAAIMLALGREPGEP" FT CDS 826..2454 FT /transl_table=11 FT /note="ORF1" FT /db_xref="InterPro:IPR005094" FT /db_xref="UniProtKB/TrEMBL:Q56294" FT /protein_id="CAA65683.1" FT /translation="MEAFGAGTRCKSPLYHANIDPRADERLTPEQWGRAVDALEAKLGF FT TGQPRALVQHVKEGREHVHVVWSRIDIERNRAIPDSHNYRKHEEVARALEREFGHERVQ FT GAHVEREGKERPARTPSHAEMQQAERSGLDPKAIKAEITALWRQTDSGKAFAGALAEAG FT YILARGDKRDFIVIDQAGESHSLARRIDGVKAADMRARLSDIDQATLPDARGARAEQAQ FT KALDDAQKAEEARTAEAREAAQKAAEAVERADEADLTRWRSMPLNALQWEINTLRPDRY FT AALAAGQAAEPTYRETLEATDAAHAGAVKARGEALEATETVRSLKQKAERYREYQGLLG FT RVRFWLQDKGILEIPEWKRLQTEISKAQKLADKRQNDLATAEALHTEAKSALKTLDSAI FT AGAVDVAQAPEWRRYEVARSVLNERIEEDRRRAAEAEAERRAEEIRRRVDAEIEREKRE FT GIEQQRRAEISKIPTIVRGLASITQTEQGTFRVRYPDLPSEELKRQQDLLRRYPDEAKS FT AVKAEFSERQVQAKREKDRGFDMMD" FT repeat_region 1489..1563 FT /rpt_type=DIRECT FT /rpt_unit_range=1489..1497 FT /rpt_unit_range=1510..1518 FT /rpt_unit_range=1535..1542 FT /rpt_unit_range=1555..1563 FT /note="9-bp" FT /note="single nucleotide mismatch in 3rd repeat" FT repeat_region 1506..1564 FT /rpt_type=DIRECT FT /rpt_unit_range=1506..1519 FT /rpt_unit_range=1551..1564 FT /note="14-bp" FT stem_loop 1381..1391 FT /note="11-bp" FT stem_loop 1465..1475 FT /note="11-bp" FT /note="single nucleotide mismatch" FT stem_loop 1568..1576 FT /note="9-bp" FT stem_loop 1651..1659 FT /note="9-bp" FT /note="single nucleotide mismatch" FT oriT complement(245..319) FT misc_feature complement(290^291) FT /note="putative nic site" FT stem_loop join(297..301,313..317) FT /note="hairpin I" FT stem_loop join(245..252,264..271) FT /note="hairpin II" XX SQ Sequence 4104 BP; 846 A; 1185 C; 1368 G; 705 T; 0 other; aagcttaaaa aagccttgga aacagccaaa aacctgagag atgactggcg acgccgtgcg 60 atgatcgctg aagcccgccg cccctggttt tggtggttcc tggcgctgct gttggccgga 120 ttggcagttt ggggctggtg gccgaccgtc gcgggctggt ggtcgtaagg gagaggttga 180 cgccaaaggt ataattggcg ttatttttgt ttgcaagcca tgcgcgggtt ccccgcacgt 240 cttgccaggg ggatgctccg ctcccccgtg gacccccaag gcaagggcgc ggtgcccctt 300 gacccaaccg agcaaggagg cggcgatggc gagcggatcg gagacgcggc aacgccaagc 360 ggctctgcgc atccgcctga ccgctgccga gcacgccacc atcacggccg ccagtgagcg 420 ggcgggcctg tcgctggcgg gctatgcgcg gtcgcaactg ctttccgcgc cgcccgtgcg 480 acaggcccgc cgccccccgg tggagcgggc cgagctggct cgcttgctgg ccgagctggg 540 caagataggc tcgaacgtga atcagatcgc ccacgccttg aatggcggtg gcgatgctgt 600 cccgtccgat ctcgccagcg ttcaggccga tatcgcggcg atccgggctg cgatcatgct 660 cgccctgggg cgagagcccg gcgagccgtg atcatcaagg gcggcacgcg ggccggtggg 720 gccgatctag gcgtccatct caaccgcacg gacaccaacg agcgggtgcg gctgctggaa 780 ttgcggggcg tggcaggggt gaacctggac caagccttgc gcgaaatgga ggcttttggg 840 gccgggacgc ggtgcaagag cccgctctac cacgccaaca tcgacccccg agcggacgaa 900 cggctgaccc cagagcagtg ggggcgggca gtcgatgcgc tggaagccaa gctaggcttc 960 acgggtcagc ctcgggcctt ggttcagcac gtcaaagagg gccgcgagca tgtgcatgtg 1020 gtctggtcgc ggatcgacat tgagcgaaac cgggccattc ccgacagcca caactaccgc 1080 aaacacgagg aagtcgctcg ggcgttggag cgtgaattcg gtcacgagcg ggtccaaggg 1140 gcgcatgtcg agcgtgaagg gaaggagcgc ccagcccgaa cgccaagcca cgcggaaatg 1200 cagcaagccg agcgatcggg cctcgacccc aaggcaatca aggccgaaat caccgctctt 1260 tggcgtcaaa cagacagcgg caaagcgttc gcgggtgctc tggcagaggc aggctacatc 1320 ctcgcacggg gtgacaagcg ggacttcatc gtcatcgatc aggccgggga gagccatagc 1380 ctggcgcggc ggatcgatgg tgtgaaggcc gcggatatgc gggccaggtt gtccgacatc 1440 gaccaagcga cgttaccgga cgcacgcggc gccagagccg agcaagctca gaaggcccta 1500 gatgacgccc agaaggccga ggaagcccgc acggcagaag cccgagaagc cgcccagaag 1560 gccgctgagg ccgtagagcg ggcagatgag gcggacctga cccgatggcg ctcgatgccg 1620 ctaaacgcgc tccaatggga gattaatacc ctacggcctg accgctacgc ggcgctggcg 1680 gcggggcaag cagcggaacc aacgtatcgt gagacgcttg aggccaccga tgctgctcat 1740 gctggggcgg tgaaggcgcg aggggaggcg cttgaggcca ccgagaccgt gcggagcttg 1800 aagcaaaaag cggagagata ccgggaatat caggggctgt tggggcgtgt gaggttctgg 1860 cttcaggaca aagggattct ggaaatccct gaatggaagc ggcttcagac cgagatctcc 1920 aaagcgcaaa agttggccga caaacggcag aacgatctag ccaccgcaga ggcgctgcac 1980 accgaggcca aaagcgcctt gaaaacgctg gatagcgcga ttgcgggggc ggtcgatgtg 2040 gcccaagcgc ctgaatggcg gcggtatgag gtggcccgat ccgtgctcaa tgagcggatc 2100 gaggaggacc gccgacgtgc cgccgaggcc gaggctgagc gccgtgccga ggagatcagg 2160 cggagggttg atgccgagat cgaacgcgag aagcgcgagg ggatcgagca gcagcggcgc 2220 gcggaaatct cgaaaatccc gacgattgtc agggggctgg cgtcgatcac acaaaccgaa 2280 cagggaacct ttcgggtcag atacccagac ttgccatcag aggaactcaa aagacagcag 2340 gacttgctgc gacgctatcc cgatgaggcc aaaagcgcgg ttaaggccga attttcagag 2400 cgccaagtgc aggccaaacg ggagaaggat cgagggttcg atatgatgga ctaagccgcc 2460 cagagcggtg ctcagtagaa aaataccttc acgaaagtga ccaccgttaa ggccaaggcc 2520 atcgccgcca tccagttgag gacacgcatt ttgtccataa gggcctgaat atcatcccgt 2580 tgtttcatca agggttatgc ttcctcgcgg aggtctaggc gacgctccac acgggtaatt 2640 cggtcgctca acccgtcgat ccgcagcatc gtgttggcat agtgactggc ctcagttgca 2700 gccagattgc tgacggcgac ctccaaggcc gtgaggcggc ggccatgatc gctcagggta 2760 tccacgattt ggtccatctt ggcgtcaaga cgccgaagat agaccagcat caggttttca 2820 ggttggtcac tcatgggacg agcctatcac attctgggcg agttgccgtg ctacgcctca 2880 tgctggtttt ccgccttcca tcagccgcag cagcggcgcg tcggcttggg cctggtcacg 2940 ttcctgaccg ctcagatgcg tggcgacgcg agggttcatg aagtagtgga ccatccccgg 3000 ccccttcatc ccggcgacac gctggcggcg gcggatgatg gcgccaaagc cctcgagttc 3060 ggtcatcatc tcgcttatct cctgcaccct ctggcctagc ttttcagcga tttcctcacg 3120 agtaagcagg atttcgccgg tgtcggtgcg caggtgcttg aagcacagcg cccagagctt 3180 cagtgccacc agcgggcggg ccgagtggtc cgcgagatag tcaacgacga tggcgttctg 3240 ttccgggctg agcatgacga aggtccattt gttgcggctg gcggtctggc ggtcgatgtg 3300 gccgatcaag gctttcacag cctcaggcat gtctccctcg aacggcagca cgccctcgca 3360 actcgtccgc ctggtcctgc cggagccggt ctggcctggt tttcagagcg tggattgtgg 3420 ccgccattga accccccttt aagtcgcatc tggtgcgcct cagtatgcac agtgtgcgac 3480 ttaatagcaa ggcaattttt tggcggattt ctgcgaaaaa ggcgcaattt tggcccgagt 3540 tatccacgcc agatagtatt tagatgatag acggcgcgcg cggagtgccc ggcgacgagg 3600 ctgacgcacg gcgcgcgctc tatctcaacc ccctaaatcc cccttcatcg gaaagccgct 3660 gacgcggctt acccatgatc ggcgacccta acgggtcgct ttgtgagatc gagaccacgc 3720 accacggcct gtgctggctg agaggccagc aagtggctca gggggacgat gtggctgggt 3780 ctggggctta ctcggccgtc tggtgcggct tttaggaggg gctatgagtt ccacacgact 3840 tcaatccgtt atatatcacg tgatatatcc ggagattatc acgccgaaat gcctagtaaa 3900 tcagtaaaaa aatcgacaga tgctgttcgt caaaagcgcg cagttgaagc gaagcgagcc 3960 gcagggctga agaagctgca aatgtgggtg ccggggctca aactcgatgc cgcgcgggcc 4020 gcagtgagtg cggttattgg cggtcggaac gcgccgccgg agcccttcca agtagcgcca 4080 gctatctcgc cagaagaggt ggag 4104 //