ID X62475; SV 1; linear; genomic DNA; STD; PRO; 7553 BP. XX AC X62475; XX DT 15-NOV-1991 (Rel. 30, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE C.psittaci plasmid pCpA1 (avian Chlamydia psittaci) XX KW Plasmid. XX OS Chlamydia psittaci OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid pCpA1 XX RN [1] RP 1-7553 RA Lusher M.; RT ; RL Submitted (01-OCT-1991) to the INSDC. RL M. Lusher, University of Manchester, Virology Division, Medical School, RL Oxford Road, Manchester M13 9PT, UK XX RN [2] RP 1-7553 RA Lusher M.E., Gregory J., Storey C.C., Richmond S.J.; RT "Analysis of the complete nucleotide sequence of the plasmid pCpA1 isolated RT from an avian strain of chalamydia psittaci"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..7553 FT /organism="Chlamydia psittaci" FT /plasmid="pCpA1" FT /mol_type="genomic DNA" FT /db_xref="taxon:83554" FT CDS <1..444 FT /codon_start=1 FT /transl_table=11 FT /gene="ORF8" FT /standard_name="ORF8 protein (3' end of gene interupted by FT cloning site)" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/Swiss-Prot:Q46264" FT /citation=[1] FT /protein_id="CAA44332.1" FT /translation="NSPDTTFSSWINLVFRTKSSAYNALGYYELFISLPDKNTKSLFQS FT IPYKTAYLLASRKGSVKDKLKVLGKISGLSNALAIDVLNKFLPPLKSSQTERCVDFEEK FT NKEVSEKLIDILKIVSSGLELSEYNKNLLHQLFEKTLKVDIRC" FT repeat_region 517..604 FT /standard_name="tandem repeats" FT /function="possible origin of replication" FT /rpt_type=TANDEM FT /rpt_unit_range=517..538 FT /citation=[1] FT CDS 666..1589 FT /transl_table=11 FT /gene="ORF1" FT /standard_name="ORF1 protein" FT /product="hypothetical protein 1" FT /db_xref="GOA:Q46257" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/Swiss-Prot:Q46257" FT /citation=[1] FT /protein_id="CAA44333.1" FT /translation="MSGLSHHHKSRLFLTVLEAANVWLATLSPITRKNYASGIKFLVAN FT HILDGSMKLEGLVCCDHCDILNRIKSLTFTYSGKPVSEASKQARAACYISFTKFLYRLT FT KGVIKHASPSKDFGNPTFYKIRDKVKTEFISKREWLLFFDALKKISFRDYLIGKLIIQG FT VRKLTEVISLRTEDISFAKNQVTFKVKKRQNRYQEVKVSYPNFLMQELQDYLGNREGWV FT FVSGEGQQVAINQVYYYFKLAEGDINSPIKVTPHVLRASALAYLKKMGFADQEIMRVSC FT LSSTQMLSAYDTGMTDNLTSQLPLIF" FT CDS complement(1673..2680) FT /transl_table=11 FT /gene="ORF2" FT /standard_name="ORF2 protein" FT /product="hypothetical protein" FT /db_xref="GOA:Q46258" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/Swiss-Prot:Q46258" FT /citation=[1] FT /protein_id="CAA44334.1" FT /translation="MRKGNSLHRNLDTIFGNEVYSNNLTHQEFLSVRNQHLWEKLRDIP FT LYEAVHTWLSSLTNHTSRSYRGSILALERIGLISLKMPLQQFALLNHNIILDAIKQIPT FT TVVCWSEGTKQVRAACYISLTKFLNRVTSGIISIAQPSHQESNKTFYKIRDLVKTNAMN FT QVERVLFLEELSKINYRDWLIAQTILQGAKRVTEALSVTTDHICFENGVISFNQIKSRG FT VFKTTIITYPQKFMKLLQDYVGERKGLVFITKKGRGVGLKQLAGTFAKAGIKAHIPFKV FT TPHVLRATAVTEYKKMGCSDSDIMKITGHSSSKMIYAYDKSTIADNASKKVSLI" FT CDS 2784..4160 FT /transl_table=11 FT /gene="ORF3" FT /standard_name="ORF3 protein" FT /product="hypothetical protein" FT /function="partial analogue of E.coli DnaB protein" FT /db_xref="GOA:Q46259" FT /db_xref="InterPro:IPR007693" FT /db_xref="InterPro:IPR007694" FT /db_xref="InterPro:IPR016136" FT /db_xref="UniProtKB/Swiss-Prot:Q46259" FT /citation=[1] FT /protein_id="CAA44335.1" FT /translation="MIKQSEEEKDLLDVEFFVLGQAVNYLEHAHVVVRRLSEHHFKSEN FT HKNIFLLIRDILRDRDTISISLIWEEIKRRNLDKSMDVSYLIHMSQNADIPIDLDHHID FT FLHEKHVNNLLKEFLDSSFQDFTRYPNRRSPYTLIDQFKERLDDIYEKTSYPRRKHIGK FT TVYDIFSSGENGKASVIAQIRHRYDYRSRHKIDYVDGLPTGYSSIDEHSIILSRGNFVV FT IAARPAMGKTAFAIDIALNLVLEQGKAVGFISLEMSPNQIVERIISNLSETSCEQLKRG FT NFSRDVLSKIESIGTKLKGTHFFICDNKSTDLNTLIDQARELRENQGIDALFIDYLQLI FT GSSKKAENRQNEIAEISRQLRKLAVELQIPVVCLSQLSRKVEDRGDKRPMLSDLRDSGQ FT IEQDADVILFLHRKDYYSQEATKGLSEIIVGKNRHGSVFSTTLRFNSCTGKFTIQKEAW FT " FT CDS 4154..5197 FT /transl_table=11 FT /gene="ORF4" FT /standard_name="ORF4 protein" FT /product="hypothetical protein" FT /db_xref="UniProtKB/Swiss-Prot:Q46260" FT /citation=[1] FT /protein_id="CAA44336.1" FT /translation="MVKSENQIIKSSLHLENQKFGRKPQLSEDLFELFPSICTESKIEV FT IGLDLQPSHYHALAAIQKLLTATNYRGNLEGSYLSRETNTFKFEGTIPRIKFTKSEYLE FT AYGVKKYKTSRNKNEFGGKEALIALEALYHLGNEPYLIVATRKRWNKGEEVVDRYQTFS FT PILRICEGWEGLTPKENKALDEEPFLNLISKKHKGFIIEPCPIIVDQIDSYFVLKPANM FT YQEIKLRFPNASKFTYTFIDWIVSTATRKKMNSSGSKEWPDKIEIGFENLSYTLRMNRY FT ITSRNWKKIESAINRCIEIAIELKWLNKHERIQGKTISKKEVFYLNKSKFQQISTNKTI FT QSTTNKN" FT CDS 5253..6047 FT /transl_table=11 FT /gene="ORF5" FT /standard_name="ORF5 protein" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR008444" FT /db_xref="UniProtKB/Swiss-Prot:Q46261" FT /citation=[1] FT /protein_id="CAA44337.1" FT /translation="MGNSGFYLNDTQNCVFADNIKLGQMESPLQDQQLILGTKSTPTAA FT KLNAKEGLKIDISNTNAQSATIDFSIDADTLSKLILDQIQKGLVDAIIKDITNSLIQEV FT IDRIISDKNLALTKAFKNFSLSEKIQCNGLFTKSNIGTLLGGTEIGKFTITPDNVNSMF FT LISADIIASRMEGNVVLALVREGDSSPCAISYGYSSGIPNVCSLRTAVNNTGTDPVTFS FT LRVGGMDSGVVWVNALANGDSILGTTATSNISFLEVKQQTNG" FT CDS 6142..6450 FT /transl_table=11 FT /gene="ORF6" FT /standard_name="ORF6 protein" FT /product="hypothetical protein" FT /db_xref="UniProtKB/Swiss-Prot:Q46262" FT /citation=[1] FT /protein_id="CAA44338.1" FT /translation="MNDKQNMTNDFIKIVKDVEKDFPELDIKMKVHKEKITFLNSPLEL FT YHKSISVILNLLNQIQTSLSLFPDSPIVEQMEHNNLKLKKALIMLILSRKDMFSKAE" FT CDS 6481..7260 FT /transl_table=11 FT /gene="ORF7" FT /standard_name="ORF7 protein" FT /product="hypothetical protein" FT /db_xref="GOA:Q46263" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/Swiss-Prot:Q46263" FT /citation=[1] FT /protein_id="CAA44339.1" FT /translation="MKTLAFCSFKGGTGKTTLSLNIGSNLAQVSRKKVLLVDLDPQANL FT TTGLGVQIQDDHSLNEILRHSNEIRRAIHKTKIENLDIIPSSVLVEDFRGLDKDISLSV FT NHLHLALQKVQDQYDVCILDTPPSLGILSQEAFLASDYLVVCLTPEPFSILGLQKIKEF FT CSTIGNNLDILGIVFSFWDERNSTNSTYMDIIETIYEGKILSSKIRRDVTVSRSLLKES FT SVINAYPNSRAAKDILNLTKEIENKLFSDEKLVQETL" FT CDS 7257..>7553 FT /transl_table=11 FT /gene="ORF8" FT /standard_name="ORF8 (5' portion (gene interupted by FT cloning site)" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/Swiss-Prot:Q46264" FT /citation=[1] FT /protein_id="CAA44340.1" FT /translation="MSKLTKEASAFFQKNQENTTKEFLKKEFAMDVFSVSLSDIEKEQI FT ENLVVSQNSKFDEEYNRGLASIKLLTGQIKSIQKQHVLLIGEKIYKVREILKNM" FT CDS complement(5498..5830) FT /transl_table=11 FT /gene="ORF9" FT /standard_name="ORF9 protein" FT /standard_name="tandem repeats" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q46265" FT /citation=[1] FT /protein_id="CAA44341.1" FT /translation="MAQGDESPSLTRARTTFPSILEAMMSAEIKNILLTLSGVIVNFPI FT SVPPKSVPILDFVNKPLHWIFSDKEKFLKAFVSAKFLSDIILSITSCIKLLVISFMIAS FT TKPFCI" XX SQ Sequence 7553 BP; 2686 A; 1142 C; 1346 G; 2379 T; 0 other; aattctcctg atacaacatt ttcatcttgg atcaatcttg tttttcgtac aaagtcttca 60 gcttataacg ccctaggata ttacgagtta ttcattagcc tgcctgataa gaataccaag 120 tctttattcc agtcaatacc gtataaaacg gcatatctat tagcttctag aaaaggatct 180 gttaaagata aacttaaggt tttgggaaag attagcggtt tatcgaatgc tctagctatc 240 gatgtattaa ataagttcct acctccttta aagtcttctc agacagaacg gtgtgtagat 300 tttgaggaaa agaataagga agtttctgag aaacttatag atattttaaa aatagtttct 360 tctggtttag agctttctga atataacaaa aacttactgc atcaactgtt cgagaaaact 420 cttaaggtag atatcagatg ctgactcaaa tcagcagcaa ataaaaagta ttaatatact 480 ttttaagaat ttaaacctga gaaatcccga gaagaattgc aactttaggt ggtagacttt 540 gcaactttag gtggtagact ttgcaacttt aggtggtaga ctttgcaact ttaggtggta 600 gacttttggt tgaaaaaaac ttagactgcg caagacttgt acattacaaa atattgagac 660 tgagtatgag cggtttgagt caccaccaca agagtagatt atttctgaca gtattagaag 720 cagctaatgt atggttagca accttatctc ctattactag aaagaattac gcttcgggta 780 tcaagtttct agtagccaat catatattag atggttccat gaaattggaa ggtttagtct 840 gttgtgatca ttgtgatatt ctgaacagaa taaaatcttt aactttcacg tactctggga 900 agccggtttc agaggcatca aaacaagcta gagcagcatg ttatatatct tttaccaagt 960 ttctttatcg attaaccaaa ggggttatta aacacgccag tccttctaag gactttggga 1020 acccaacttt ttataagatt agagataagg tgaagacaga atttatctcg aaaagagagt 1080 ggttgttatt ttttgatgct ttgaaaaaga ttagttttag ggactatctg ataggcaagt 1140 tgatcataca aggagtcaga aaattaaccg aggtaatatc tttaaggact gaagacatat 1200 cctttgctaa gaatcaggtt acattcaagg taaaaaagag acaaaataga taccaagagg 1260 tgaaggtaag ctatcctaat ttcttaatgc aagagttgca agattatctt gggaatagag 1320 agggttgggt ttttgtttcc ggtgaaggac aacaggtagc aatcaatcag gtttattatt 1380 attttaagtt ggctgaaggt gatattaatt ctccaattaa agtaacacct catgttctac 1440 gagctagtgc tctagcatat ctaaaaaaaa tgggctttgc tgaccaagag ataatgcgag 1500 tatcgtgttt atcttctacg caaatgttat cagcttatga tacaggcatg acggacaact 1560 taacgtctca actaccttta atattttaat ataattttaa ttatatagaa ttggatgatt 1620 tttggtttag ttgtagtttt ttaagtggaa attattgatt tccactttat gactaaatta 1680 gagacacttt ttttgatgcg ttgtcggcta tagtagattt atcataagcg tatatcattt 1740 tcgaagatga gtgacctgtt atcttcatga tatcggaatc tgaacacccc atttttttgt 1800 attcagtaac tgcggtagct cgtagaacat ggggtgttac tttaaatggt atgtgtgctt 1860 ttattcctgc tttagcaaaa gtacctgcca attgtttcaa accaacaccc ctgcctttct 1920 tagttataaa caccaaccct tttctttccc ctacataatc ttgaagtaat ttcataaatt 1980 tttgcggata ggtaataatt gttgttttaa acacacctcg acttttaatt tgattaaaag 2040 atatgactcc gttttcaaaa caaatatggt ctgttgtaac tgatagagct tctgttactc 2100 gttttgcacc ttgaagaata gtttgggcta ttaaccaatc tctgtagtta attttagata 2160 attcctctaa aaataatacc cgctcaactt ggttcatagc atttgttttg accagatctc 2220 ggattttgta aaatgtctta ttggattctt gatgagatgg ttgtgctata gatattattc 2280 cagatgttac tcgatttaaa aacttagtta gggatatata acatgctgct ctgacttgct 2340 ttgttccttc agaccaacac actactgtgg taggaatttg ttttatagcg tctaatataa 2400 tgttgtggtt tagcagagca aattgctgta gtggcatttt taaagaaatc aaacctattc 2460 tttctaaagc taaaatagat cctctgtacg atctagatgt atgattagtt aaagaagaca 2520 gccatgtatg cacagcttca taaagtggga tatctcttag tttttcccaa agatgctggt 2580 ttctaacaga aagaaattcc tgatgtgtta ggttgtttga ataaacttca ttcccaaaga 2640 ttgtatctaa atttctatgt agtgaattgc ctttacgcac acacaacctc gtgatataag 2700 ttatgagttt tacctgatta tagaaataat caggtaattt atatttcttt tatacaatcc 2760 tcgaagttat ttctggatac cttatgataa aacaatctga agaagaaaaa gatctcctag 2820 atgttgagtt ttttgtctta ggacaagctg ttaattattt agaacatgcg catgttgttg 2880 ttcgtagatt atcggagcac cacttcaaat cagagaatca taagaatata tttttgctaa 2940 tacgggatat attaagagac cgagatacaa tatcaatatc cctgatttgg gaagagataa 3000 agagaagaaa tctcgataag agtatggatg tttcatattt gatacatatg tctcaaaatg 3060 cagacatccc tatagattta gatcatcata ttgacttttt gcatgaaaaa catgtcaata 3120 acctacttaa agagttctta gattcatctt ttcaagattt tacaagatat ccaaatagac 3180 gttcaccata cactcttatt gatcagttca aagaacgctt ggatgacatt tatgaaaaga 3240 catcgtatcc aagacgaaaa catataggga aaaccgttta tgacatattt tcatccgggg 3300 aaaatggcaa agctagtgtt attgcccaaa tacgtcacag gtatgattat agatccagac 3360 ataagattga ttatgtagat ggattgccta caggatattc ttcaatagac gaacatagca 3420 ttatattatc aaggggaaac tttgttgtta ttgctgcacg gcctgctatg ggtaaaaccg 3480 cttttgctat agacatagct cttaatctcg ttttagaaca gggaaaggct gtgggtttta 3540 tttcattaga aatgagccca aatcaaattg tagagagaat tatatcaaat ttaagtgaga 3600 cttcttgcga acaattaaaa agaggtaatt tttctaggga tgttttatct aaaatagaaa 3660 gcattggaac aaagctgaaa ggaactcatt tctttatatg tgataacaag agtacagatc 3720 taaatacatt aatagatcaa gctagggaat taagagaaaa tcaaggtata gatgctttgt 3780 ttatagacta tttgcagtta ataggatctt cgaaaaaagc agagaatcgc caaaatgaaa 3840 tagctgaaat ttcaagacaa ctgagaaaat tagctgttga gttacaaata cccgttgtat 3900 gtttatcaca gctatctagg aaggtagaag acagaggaga taagaggcct atgttgtcag 3960 atcttagaga tagcggtcaa atagagcaag atgctgatgt catactattc ttacatagaa 4020 aagactatta ttcacaggaa gctacgaaag gactctcaga aatcatagta gggaaaaata 4080 gacatggttc tgtgttttca acaacgctaa gatttaattc gtgcacaggg aaatttacaa 4140 ttcaaaaaga agcatggtga aatcagaaaa tcagataatt aaaagttctc ttcacttaga 4200 gaaccaaaag tttgggagaa aaccccagtt atcagaagac ttattcgagc tgttcccgag 4260 catttgtact gaatctaaaa tcgaagtaat agggctagat ttacaaccat ctcactatca 4320 tgctttagca gcgattcaaa aactcttaac agcaacaaat tatcgaggaa atttagaagg 4380 atcttattta tccagagaaa caaatacttt taaattcgaa ggaacaattc cgagaattaa 4440 attcacaaag tcagaatatt tagaagctta tggagtaaaa aaatataaaa catctagaaa 4500 taagaatgag tttggaggca aagaagcttt aatagctctc gaagcattgt atcatttagg 4560 gaatgagcct tatctaatag ttgcgacaag aaaacgatgg aataaaggag aagaagtcgt 4620 tgatcgctat caaactttct ctcctatttt acgcatctgt gaaggttggg aaggtctgac 4680 tccaaaagaa aataaagctt tggatgaaga accttttctt aatctgattt ctaaaaaaca 4740 taaagggttc atcatagaac cttgtcctat catagtagat caaattgatt cctatttcgt 4800 tttaaagcct gcaaatatgt atcaggaaat aaaattaaga ttcccaaatg catcaaaatt 4860 cacttacaca ttcatagact ggattgttag tacagctacg agaaaaaaaa tgaatagttc 4920 aggatcaaaa gaatggccag ataaaataga aatagggttc gaaaacctat cttatacttt 4980 gaggatgaat cgatatatta cttctaggaa ctggaaaaaa atagaatccg ctatcaatag 5040 atgcattgag atagctattg agctaaaatg gttaaacaaa cacgaaagga ttcaaggaaa 5100 aactatttct aaaaaagaag tattttattt aaacaaaagt aaatttcagc aaatttcaac 5160 aaataaaaca attcaaagca caacaaataa aaattaattg ttgatagtca aaaaaaatta 5220 aattaaaact caaaataaaa agagttttaa ttatgggtaa ttctggtttt tacttaaatg 5280 acacccaaaa ttgtgtattt gcagacaata ttaagcttgg tcaaatggaa agtcccttac 5340 aagatcaaca acttatatta gggacaaagt caacaccaac agcagccaaa ttgaatgcta 5400 aagagggtct taaaatagat atctcaaaca caaatgcaca aagtgccacc atagacttct 5460 cgatagatgc tgatacctta tcaaagctaa tactagatca aatacagaag ggtttggtag 5520 atgctatcat aaaagatatc actaatagtt taatacaaga agttattgat agaataatat 5580 cagataaaaa tttagcactt acaaaagctt ttaagaactt ttctttatca gaaaaaatcc 5640 aatgcaacgg tttatttaca aagtctaata ttggcacact tttaggtgga acagaaatcg 5700 ggaaatttac aattacaccc gacaacgtta atagtatgtt tttaatttct gctgacatca 5760 tagcttctag aatggaaggg aatgtcgttc tcgctcttgt aagagaaggt gattcatctc 5820 cttgtgccat tagttatggt tactcatcag ggattcctaa tgtttgttca ttgagaacgg 5880 ctgtaaacaa cactggaaca gatcctgtta cattctctct aagagttggt ggtatggata 5940 gtggtgtggt ttgggtaaat gctttggcaa atggtgactc aattttagga actacagcaa 6000 catcaaatat atcgttttta gaagtaaaac aacaaacaaa tggttaataa attataagca 6060 acttaattaa atatattttc gttggatatt ttttttgtgg ttttatatga aaaaatcata 6120 cgtctattta ctggagagat tatgaatgat aaacagaata tgactaatga ttttatcaag 6180 attgtaaaag atgttgaaaa agattttcca gaactagata tcaaaatgaa agtgcacaag 6240 gaaaaaatta cttttttgaa ttctccattg gaattatacc acaaaagtat atccgttata 6300 ttaaacttac ttaatcaaat acaaacatct ttaagcttgt ttcccgactc acctatagtc 6360 gaacaaatgg aacataataa tttaaagcta aaaaaagctt tgattatgtt gattttgtcg 6420 agaaaagata tgttctcaaa agctgaataa attaacatct actctaacgt tggagtaagt 6480 gtgaaaacgc tagcattttg ttcttttaaa ggtggtactg ggaaaacaac cctatccctt 6540 aatattggta gtaatcttgc ccaagtaagc agaaaaaaag ttttgcttgt ggacttagat 6600 ccacaagcaa atttaactac cggtcttgga gttcaaattc aagatgatca cagtctgaat 6660 gagattttaa gacattctaa tgagattaga agagccatac ataaaacgaa aatagaaaac 6720 cttgatatca ttccctcatc tgttcttgta gaagatttta gggggttgga taaagatatc 6780 agtttatcag ttaatcattt gcacctagct cttcagaagg tccaggacca gtatgatgta 6840 tgtattttgg atacgcctcc tagtttagga attctttccc aagaagcatt tttagctagt 6900 gattacctag ttgtgtgttt aaccccagaa ccattctcta ttcttggttt gcaaaagata 6960 aaagagttct gttcaacaat cggaaacaat ttggatatac taggaatagt tttttctttt 7020 tgggatgaaa gaaattcaac aaattcaact tacatggaca ttatagaaac gatttatgaa 7080 ggtaaaatct tgtccagtaa aatacgaaga gatgttactg tcagcagatc tttattaaaa 7140 gaatcatcag taataaacgc ctacccaaat tctagagcag ctaaagacat attaaactta 7200 actaaagaga tagaaaacaa gctattctct gatgaaaaat tagtccagga aactctgtga 7260 gtaaattaac taaagaagca tccgcttttt ttcaaaagaa tcaagaaaac acaactaaag 7320 aatttcttaa aaaggaattc gctatggatg tgttttcagt atctctaagt gatattgaaa 7380 aggagcaaat agaaaactta gtagttagcc aaaatagtaa gttcgatgaa gaatataata 7440 gaggattagc ttctattaag ctacttactg ggcaaattaa atccatacaa aaacaacacg 7500 ttcttttaat aggagagaaa atctataagg tcagagaaat cttaaaaaac atg 7553 //