ID X13744; SV 1; linear; genomic DNA; STD; VRL; 4213 BP. XX AC X13744; XX DT 24-FEB-1989 (Rel. 19, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Avian Retrovirus IC10 proviral genome XX KW mil oncogene; provirus; Rmil oncogene; serine threonine kinase. XX OS Avian retrovirus IC10 OC Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; OC Alpharetrovirus; unclassified Alpharetrovirus. XX RN [1] RP 1-4213 RA Dezelee P.; RT ; RL Submitted (15-DEC-1988) to the INSDC. RL Barnier J.V., Institut Curie, Centre Universitaire , Bat 110, 91405 Orsay RL Cedex, France. XX RN [2] RP 1-4213 RX DOI; 10.1093/nar/17.3.1250. RX PUBMED; 2537952. RA Eychene A., Marx M., Dezelee P., Calothy G.; RT "Complete nucleotide sequence of IC10, a retrovirus containing the Rmil RT oncogene transduced in chicken neuroretina cells infected with avian RT retrovirus RAV-1"; RL Nucleic Acids Res. 17(3):1250-1250(1989). XX DR RFAM; RF00214; Retro_dr1. DR RFAM; RF00467; RSV_PBS. XX FH Key Location/Qualifiers FH FT source 1..4213 FT /organism="Avian retrovirus IC10" FT /isolate="IC10" FT /mol_type="genomic DNA" FT /clone_lib="lambda gt11" FT /cell_line="neuroretina cells from chicken embryos" FT /proviral FT /db_xref="taxon:11874" FT LTR 1..54 FT /note="U3 region of 5'LTR" FT LTR 55..155 FT /note="R and U5 region of 5'LTR" FT CDS 453..3692 FT /note="gag-Rmil-env polypeptide (1079 AA)" FT /db_xref="GOA:P10533" FT /db_xref="InterPro:IPR000719" FT /db_xref="InterPro:IPR001245" FT /db_xref="InterPro:IPR008271" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR017441" FT /db_xref="UniProtKB/Swiss-Prot:P10533" FT /protein_id="CAA32008.1" FT /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLTSPSDL FT YSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGGGR FT VSPPGPESIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTFCYHCGTAIGC FT NCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPPGAEQPRAEQQHAGQAPGPALTDW FT ARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEA FT LMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERT FT NLDRLKGLADGMVGNPQGQAVLLRPGELVAITASALQAFREVARLAEPAGPWADITQGP FT SESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEII FT KYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGLCYTCGSPGH FT YQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRKRDGNQGQRPGRGLSSGPWPGPDQPAV FT SLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVME FT AANPQIHGIGEGGSTAGLSATPPASLPGSLTNVKALQKSPGPQRERKSSSSSEDRNRMK FT TLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAF FT KNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIA FT RQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGS FT ILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLS FT PDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPKIHRSASEPSLN FT RAGFQTEDFSLYACASPKTPIQAGGIGEWAVHLLKGLLLGLVVILLLVVCLPCLLQCVS FT SSIRKMIDNSLGYREEYKKLQEAYKQPERRA" FT mat_peptide 453..2387 FT /note="deleted gag protein" FT mat_peptide 2388..3488 FT /note="v-Rmil protein" FT mat_peptide 3489..3689 FT /note="deleted env protein" FT LTR 4006..4213 FT /note="U3 region of 3'LTR" XX SQ Sequence 4213 BP; 1089 A; 950 C; 1219 G; 955 T; 0 other; gaattccgca ttgcagagat attgtattta agtgcctagc tcgatacaat aaatgccatt 60 tgaccattca ccacattggt gtgcacctgg gttgatggcc ggaccgttga ttccctgacg 120 actacgagca catgcatgaa gcagaaggct tcatttggtg accccgacgt gatcgttagg 180 gaatagtggt cggccacaga cggcgtggcg atcctgtcct catccgtctc gcttattcgg 240 ggagcggacg atgaccctag tagagggggc tgcggcttag gagggcagaa gctgagtggc 300 gtcggaggga gctctactgc agggagccaa cataccctac cgagaactca gagagtcgtt 360 ggaagacggg aaggaagccc gacgactgag cggtccaccc caggcgtgat tccggttgct 420 ctgcgtgatt ccggtcgccc ggtggatcaa gcatggaagc cgtcataaag gtgatttcgt 480 ccgcgtgtaa gacctattgc gggaaaacct ctccttctaa gaaggaaata ggggctatgt 540 tgtccctgtt acaaaaggaa gggttgctta cgtccccctc agacttatat tccccggggt 600 cctgggatcc cattaccgcg gcgctctctc agcgggctat ggtacttgga aaatcgggag 660 agttaaaaac ctggggattg gttttggggg cattgaaggc ggctcgagag gaacaggtta 720 catctgagca agcaaagttt tggttgggat tagggggagg gagggtctct cccccaggtc 780 cggagagcat cgagaaacca gcaacggagc ggcgaattga caagggggag gaagtgggag 840 aaacaactgt gcagcgagat gcgaagatgg cgccggagga aacggccaca cctaaaaccg 900 ttggcacatt ctgctatcat tgcggaacag ctattggctg taattgcgcc acagcctcgg 960 ctcctcctcc tccttatgtg gggagtggtt tgtatccttc cctggcgggg gtgggagagc 1020 agcagggcca ggggggtgac acacctccgg gggcggaaca gccaagggcg gagcaacagc 1080 atgcgggtca ggctcctggg ccagccctga ctgactgggc aagggtcagg gaggagcttg 1140 cgagtacagg tccgcccgtg gtggccatgc ctgtagtgat taagacagag ggacccgcct 1200 ggacccctct ggagccaaaa ttgatcacaa gactggctga tacggttagg accaagggct 1260 tacgatcccc gatcactatg gcagaagtgg aagcgcttat gtcctccccg ctgctgccgc 1320 atgatgttac gaatctaatg agagttattt tgggacctgc cccatatgcc ttgtggatgg 1380 acgcttgggg cgtccaacta cagacggtta tagcggcagc cactcgcgac ccccgacacc 1440 cagcgaatgg tcaagggcgg ggggaacgga ctaacttgga tcgcttaaag ggtttagctg 1500 atgggatggt gggcaaccca cagggtcagg ccgtattatt aagaccgggg gaattggttg 1560 ctattacggc gtcggctctc caggcgttta gagaagttgc ccggctggcg gaacccgcag 1620 gtccatgggc ggatatcacg cagggaccat ccgagtcctt tgttgatttt gccaatcggc 1680 ttataaaggc ggttgagggg tcagatctcc cgccttccgc acgggctccg gtgatcattg 1740 actgctttag gcagaagtca cagccagata ttcagcagct tatacgggca gcaccctcca 1800 cgctgaccac cccaggagag ataatcaaat atgtgctaga caggcagaag actgcccctc 1860 ttacggatca aggcatagcc gcggccatgt cgtctgctat ccagccctta gttatggcag 1920 tagtcaatag agagagggac ggacaaactg ggtcgggtgg tcgtgcccga gggctctgct 1980 acacttgcgg atccccggga cattatcagg cgcagtgccc gaaaaaacga aagtcaggaa 2040 acagccgtga gcgatgtcag ttgtgtgacg ggatgggaca caacgctaaa cagtgtagga 2100 agcgggatgg caaccagggc caacgcccag gaagaggtct ctcttcgggg ccgtggcccg 2160 gccctgacca gcctgccgtc tcgttagcga tgacaatgga acataaagac cgccccttgg 2220 ttagggtcat tctgactaac actgggagtc atccggtcaa acagcgttcg gtgtatatca 2280 ccgcgctgtt ggactctgga gcggacatca ctattatttc agaggaggac tggcccaccg 2340 attggccagt gatggaggcc gcgaacccgc agatccatgg gataggagag ggaggttcaa 2400 ctgcaggttt gtctgcaaca cctcctgcat ctttgcctgg gtcacttacc aatgtgaaag 2460 cattacagaa atcaccaggc ccccaacggg aaaggaaatc atcctcatcc tcagaagaca 2520 gaaataggat gaaaaccctt ggtcgacgag attcaagtga tgattgggaa ataccagatg 2580 ggcagatcac agttggacaa aggataggat ctggatcatt tggaacagtc tacaaaggaa 2640 agtggcatgg tgacgtggca gtgaaaatgt tgaatgttac agcacccaca cctcaacagt 2700 tacaggcttt caaaaatgaa gtaggagtgc tcaggaaaac acggcatgtg aatatcctac 2760 tttttatggg ttattcaaca aaacctcagt tggctattgt tacacagtgg tgtgaggggt 2820 ccagcttata tcaccatctg cacataattg agaccaagtt tgaaatgatc aaactaattg 2880 atattgcacg acagactgca caaggcatgg attatttgca tgccaagtca atcatccaca 2940 gagacctcaa gagtaataat atttttcttc atgaagacct cacagtaaaa ataggtgact 3000 tcggtctggc tacagtgaaa tcacgatgga gtggatctca tcaatttgaa cagttatctg 3060 gatcaattct atggatggca ccggaagtga tcaggatgca agacaaaaac ccatatagct 3120 ttcagtcaga tgtgtatgca ttcgggattg tgctttatga actgatgact ggacagttac 3180 catactcaaa catcaacaac agggaccaga taatttttat ggtgggacga ggatatctat 3240 ctccagacct cagtaaagta agaagtaact gtcccaaagc tatgaagaga ctaatggcag 3300 aatgcttgaa aaagaaaaga gatgagagac ctctttttcc acagattctt gcctccattg 3360 agcttctggc ccggtcgttg ccaaaaattc accgcagtgc atctgagccg tcactaaacc 3420 gggctggctt ccagaccgag gatttcagtc tgtatgcttg tgcttctcca aaaacgccca 3480 tccaagcagg aggaatagga gaatgggccg tacacttgct gaaaggactg cttttggggc 3540 ttgtagttat cttgttgcta gtggtatgct tgccttgcct tttgcaatgt gtatctagta 3600 gtattcgaaa gatgattgat aattcactcg gctatcgcga ggaatataaa aaattacagg 3660 aggcttataa gcagcccgaa agaagagcgt aggcgagttc ttatattccg tgtgatagct 3720 ggttggattg gtaattgatc ggctggcacg cggaatatag gaggtcgctg aatagtaaac 3780 ttgtagactt ggctacagca tagagtatct tctgtagctc tgatgactgc taggaaataa 3840 tgctacggat aatgtgggga gggcaaggct tgcgaatcgg gttgtaacgg gcaaggcttg 3900 actgagggga caatagcatg tttaggcgaa aagcggggct tcggttgtac gcggttagga 3960 gtcccctcag gatatagtag tttcgctttt gcatagggag ggggaaatgt agtcttatgc 4020 aatactcttg tagtcttgca acatgcttat gtaacgatga gttagcaaca cgccttataa 4080 ggagagaaaa agcaccgtgc atgccgattg gtggaagtaa ggtggtatga tcgtggtatg 4140 atcgtggtat gatcgtgcct tattaggaag gcaacagacg ggtctaacac ggattggacg 4200 aaccactgaa ttc 4213 //