ID X05817; SV 1; linear; genomic DNA; STD; VRL; 7265 BP. XX AC X05817; D00146; X59063; XX DT 02-APR-1988 (Rel. 15, Created) DT 18-APR-1998 (Rel. 55, Last updated, Version 15) XX DE Bovine papillomavirus type 4 (BPV-4) genome XX KW genome; unidentified reading frame. XX OS Bovine papillomavirus type 4 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Xipapillomavirus. XX RN [1] RX PUBMED; 3039043. RA Patel K.R., Smith K.T., Campo M.S.; RT "The nucleotide sequence and genome organization of bovine papillomavirus RT type 4"; RL J. Gen. Virol. 68:2117-2128(1987). XX RN [2] RC revised by [4] RA Campo M.S.; RT ; RL Submitted (15-MAR-1988) to the INSDC. XX RN [3] RX PUBMED; 1849970. RA Jackson M.E., Campo M.S.; RT "Positive and negative E2-independent regulatory elements in the long RT control region of bovine papillomavirus type4"; RL J. Gen. Virol. 72:877-883(1991). XX RN [4] RP 1-7265 RA Campo M.S.; RT ; RL Submitted (08-APR-1991) to the INSDC. RL M.S. Campo, Beatson Inst for Cancer Research, Garscube Estate, Bearsden RL Road, Glasgow G61, UK XX DR GOA; P08341. DR GOA; P08342. DR GOA; P08344. DR GOA; P08345. DR GOA; P08346. DR GOA; P08350. DR InterPro; IPR000148; Papilloma_E7. DR InterPro; IPR000427; Papillomavirus_E2_C. DR InterPro; IPR000784; Late_L2. DR InterPro; IPR001177; DNA_helicase_E1_C_Papillomavir. DR InterPro; IPR001866; Papillomavirus_E2_N. DR InterPro; IPR002210; Capsid_L1_Papillomavir. DR InterPro; IPR011222; dsDNA_vir_gr_I_capsid. DR InterPro; IPR012677; Nucleotide-bd_a/b_plait. DR InterPro; IPR014000; DNA_helicase_E1_N_Papillomavir. DR InterPro; IPR014015; Helicase_SF3_DNA-vir. DR InterPro; IPR016393; Rep_E1_papillomaV. DR UniProtKB/Swiss-Prot; P08341; VL1_BPV4. DR UniProtKB/Swiss-Prot; P08342; VL2_BPV4. DR UniProtKB/Swiss-Prot; P08343; VL3_BPV4. DR UniProtKB/Swiss-Prot; P08344; VE1_BPV4. DR UniProtKB/Swiss-Prot; P08345; VE2_BPV4. DR UniProtKB/Swiss-Prot; P08346; VE3_BPV4. DR UniProtKB/Swiss-Prot; P08347; VE4_BPV4. DR UniProtKB/Swiss-Prot; P08348; VE5A_BPV4. DR UniProtKB/Swiss-Prot; P08349; VE5B_BPV4. DR UniProtKB/Swiss-Prot; P08350; VE7_BPV4. DR UniProtKB/Swiss-Prot; P08352; VE8_BPV4. XX FH Key Location/Qualifiers FH FT source 1..7265 FT /organism="Bovine papillomavirus type 4" FT /mol_type="genomic DNA" FT /db_xref="taxon:10562" FT misc_feature 236..457 FT /note="E8 ORF" FT /note="first ATG of E8 occurs at position 332" FT misc_feature 647..1009 FT /note="E7 ORF" FT /note="first ATG of E7 occurs at position 716" FT misc_feature 894..2825 FT /note="first ATG of E1 occurs at position 1002" FT /note="E1 ORF" FT misc_feature 2195..2446 FT /note="E3 ORF" FT misc_feature 2743..3993 FT /note="E2 ORF" FT /note="first ATG of ORF E2 occurs at position 2770" FT misc_feature 3284..3727 FT /note="E4 ORF" FT /note="first ATG of ORF E3 occurs at position 3296" FT misc_feature 3441..3662 FT /note="E5 ORF" FT misc_feature 3987..5585 FT /note="L2 ORF" FT /note="first ATG of ORF L2 occurs at position 4011" FT misc_feature 4507..4776 FT /note="L4 ORF" FT /note="first ATG of ORF L4 occurs at position 4555" FT misc_feature 5554..7116 FT /note="L1 ORF" FT /note="first Atg of ORF L1 occurs at position 5599" FT misc_feature 6389..6730 FT /note="L3 ORF" FT /note="first ATG of ORF L3 occurs at position 6392" XX SQ Sequence 7265 BP; 2245 A; 1400 C; 1651 G; 1969 T; 0 other; acccgccttg cacctggacg ctgtgtaaag caaaaactat gcaggcacac ctaaaggctg 60 tcaactttga agttttattg gccacaaaat taattggccg agccaagttg gcatataaaa 120 ctgttcttga atagtcacac tggcttttgg ccataacaag ctcagacaaa gtgtaccgat 180 tgcggtcgaa actctcacgc taggtaagtg ttgtacctaa caactattta cctagggaaa 240 atatcagttg catcccattc ggtcgtaccg aatcgggtgc atatataagg agagcagtgc 300 ggatttggtg catgaggcag tagctctcat catgtctttg tggcttatct atgttttgtt 360 gcttttctgg tgtgctttta attttcttgc actgttattt gcaattattg tgtaccttct 420 gttaatttct actattactc ggttagatgg atgggattga atttttattt attgtgttta 480 ttatttgctt gatttctgat ttgcttttgc tatatatagt ggagattatg cgtttggtgt 540 tattgctgtc tttgctagat gaattagaac aggaggaaca gtaaatagaa tattgctgtg 600 cttttacatt tgagaaggat tgtaggtgtg ggcatttaaa agctgacctt ccagtcttaa 660 ttgcagtagg cgcctaagag ggtggtggtg gtataagttc aagtttttca agaaaatgaa 720 ggggcagaac gtgacattac aggacattgc aatagaatta gaggatacaa ttagtccaat 780 taacttgcat tgtgaagagg agattgaaac tgaggaggtg gacaccccta acccttttgc 840 aataacagca acttgttatg cttgcgagca agtccttcgt ttagctgttg taacgtcaac 900 agaaggaatt catcaactgc agcaactgct gttcgacaac ctctttctac tgtgtgcagc 960 ttgctccaaa caagtgttct gtaaccgcag acccgagcga aatggaccct aaaggtacta 1020 ccgtgcttga ctttattgag gaacaagcag aatgtagtca atctgatagc gagcaaggca 1080 gtgaagaaaa ttgttctgat atatctgacc taattgataa tgctgaatac gagcaaggga 1140 attctgcaga attgtttgca caacagcagg ctttcgattt ccataaagac atatgcacca 1200 caaagcgaaa cttaaaacgg tcactgcgaa acgcttttca atgcataacc agtcagagta 1260 acacccctgc ttctagatcc gcgccaaaaa gacgtttgct agacgacagt ggttataatg 1320 aagatatttc tacagaagtg gtacaggtag atgaaaatgg cggctcagag ggttacggga 1380 gcttaacctc gcaacatttg tctggtgtat gcctaaatca aggggataac ggaggggtag 1440 ataaagaaaa tgtagattgc acagcgctac tgcgagccgg tagtcgcagg gcagcgtatt 1500 tgggtgtttt taaagagaaa tttactatta gcttcactgc tttgacaaga atctttaaaa 1560 atgacaaaac ttgctgcaga aactgggtgg gaactgtata tagagccaga gaagaattgc 1620 tcgaggcttc aaaaacaatt ttgcaaaaat gctgtgattt tattctattg ttaacgcaca 1680 cttgtaaata tggtttcctg gcattgtttt tgctggaatt taagactgct aaaagtagag 1740 agactgtgca gcgcttgttt gagcatatat tgcaggtgga aaaagaagat atgctgttag 1800 aacctcctaa gttaaaaagt ttacccgcgg caaccttttg gtggaaaatt cagcatagca 1860 acaactcttt taaatgggga actctacctg attggatagc tagacaaact atgatatctc 1920 atcaaatagc agatgatgag ccatttagtc tcagtgtaat ggtgcagtgg gcttatgatc 1980 ataattatac tgaagaatca acaattgcat atcattatgc aaaattagcc tcagaagatt 2040 caaatgctgc agcatttcta aaatgtaata atcaagtaaa gcatgtgaaa gaatgtgcac 2100 aaatgactag gtattataag actgcagaaa tgacagaaat gtcaatggga caatggatta 2160 aaaaatgcat tggtgagata gaaggtgtag gtgattggaa gcaaatctgc aaatttttaa 2220 agtttcaaaa tgtcaacttt ttatcattta tgtctgcttt aaaagatttg ttgcacagag 2280 tacccaaaag gaattgcatg gttatctgtg ggcctccaaa cacaggaaaa tctatgtttg 2340 taatgagttt tatgaaagct ttgcaaggaa aagtattatc atttgtaaat tcaaaaagcc 2400 atttttggct ccagccttta cgtggagcaa aagtagctgt attagatgat gctacacgag 2460 ccacatggac atactttgat acctacctca gaaatggcct agatggcacg cctgtgtcat 2520 tagatatgaa gcatagagcc cccttgcaaa tatgtttccc ccctttggta atcaccacta 2580 atgtcaatgt gatgcaggat cctgcatatt tttatttgca cagtagaatt gtatgttttg 2640 agtttccaaa tacatttcca ttagatgagg ctggaaatcc tcttttatta attgatgaac 2700 ttagttggaa atcttttttt gaaaggcttt ggacacagct agacctcaca gacgctgagg 2760 aagacgaaga tggtgagcct cgaagcccgt ttcgatgctg tccaagatca gttgctacaa 2820 gtttatgaaa atgactctaa tacattagaa ctgtgtttac aatactgggc actcataagg 2880 agagagaatg cactttatta ttatgccagg caacaaggta aaacaaggct aggtttgtac 2940 acagtgcctc ccaccagagt atcagaacaa aaggctaagg atgcaatcaa gatgtactta 3000 tgtttggaaa gcctgcagaa atcagagttt gccaatcaaa gatggtcact tgtggacact 3060 agcatagaga catttaaggc gccacctgaa aacactttaa aaaaaagggg ccagcatgtg 3120 actgtcattt atgatcagaa tgcaatgaat tcaatggtat acactttgtg gaaagaagtg 3180 tattatgttg atgaaactga gacatggcat aaaaccagta gcgatttgga ttatgatgga 3240 atattttata ttgataatca ggggaacaag atatattatg tgaactttca ggacgatgca 3300 gcattgtatt ctaattctgg catggggcaa gtgcattttg aaagcaaagt tctttctccc 3360 tctgttacca gttcgcttcg tgttgggagt accggaggac aacgcgggac ccaaaccggg 3420 gaccacgccc gaggacgtag cagaccgtcc ccccgatctt ccagagacgc ccggggccgg 3480 cagcagaggg cgcagtcgtc ttcgcgatcg cgatcacggt cacgatcacg atcgcctacg 3540 aaggggccgc actccagtgg acgagacacg cggctaccga gtcccgggag acccccggga 3600 ggaagacgaa ggggcacccc cgaacgggaa cgatgccctg gaacaccgac tccgccaact 3660 cctgaccaag tgggaggacg atcttcaacg cctaagagac aagcttcgtc tagacttgct 3720 cagcttatag acgcggcata cgaccctcca gtactcctgc tacaaggtgc tgcaaacact 3780 ttaaaatgct ttaggcgcag ggcaacgcag gctcatcctc acaaatttct gtgcatgagc 3840 acaagctgga catgggttag caaaacttcc cctttgaaat cgggacatag aatgctgatt 3900 gcattttcga actctgagca aaggaactgc tttttggctt ctgttcgatt accaaaaggt 3960 gtcagtgctg tgaaaggggc tcttgacggg ttatagcaaa tgctattaaa atggttcgtg 4020 cagcaagacg aaaacgtgcg tctgaggatg atttgtacag agggtgcaga atggggcaag 4080 actgccctat tgacatcaaa aacaaatatg aacacaacac attagctgac agaattttga 4140 agtgggtcag ctctttcttg tactttggac aattaggtat aagcagtggt aaaggtacag 4200 gggggtccac aggctacaca ccattgggtg gcagaggagg aggtggagta acctctggga 4260 aaggagcaaa tgttgttaga cccactgtta ttgtggatgc attaggtcct actggggttc 4320 ctattgatcc tgcagtccca gatagtagta ttgtgccatt attggaaagc agtgggggca 4380 gcaccacatt agatgcaact cctggagctg aaattgaaat cattgcagag gtgcacccac 4440 cacctgtata tgaaggccct gaagttacta taggggacat agaagagccc ccaatattag 4500 aagtagtgcc tgaaacacat cctacatctc gtgttagaag cacaacaagt aaacatgaca 4560 acccagcttt cacagcatac gttgcaagtg cacaattacc aggagaaacc tcagcttcag 4620 acaatgttta cattttgcat ggtttcaatg gtgatttcgt ggggcaagct gatcctgaag 4680 gggatacaat atttgaagag attcctctgg aagaatttgg ggttcctgac atgccaccaa 4740 gcactagcac acctacaagc tcattcagaa gtgttttaaa taaatttcag cgaaggctgt 4800 acaatagaaa gttagttcag caagtcaaaa tcacaaacag aaacactttt ttgaagcaac 4860 cgtcccaatt tgtgcagtgg gaatttgaca accctgccta tgttgatgac tctttgtcat 4920 taatctttca gcaagattta gatgaagtgt cagctgctcc tgatgctgat tttcaggata 4980 ttgttaagct aagcagacca gtattcacaa caaaagaagg cttagtcagg gtgagcagat 5040 taggccaaag aggaactatt aaaacacgca gtggcttgca aataggtggc catgtgcatt 5100 attatacaga tttgagtcca attagaccat tagaagacat tgaaatgact tcctttgggg 5160 aggtgtctgg agaaagtgta attatgcagc cattaggtga aagcacattc attgatacag 5220 gtgcaaggtc agacaattta aatgaaggcg tcatagagta ctctgagagt gctttagagg 5280 atgctatgga ggaggatttt agtcaagtgc gtttggaaat aagcacttct gcaagaagta 5340 gaactagtat agtcactgtt caagaaggaa taccaccagg atcagtcaaa ctgtttataa 5400 atgatgctgc agcaacagtt gacactggtt atctgccagg aaagccagat tatgaggacc 5460 ctttcacccc aatagagcct gctgtcccgc ctgatataat actcaatttt gaagatgaca 5520 ctgcaacctt ttttctacat cccagtcttt tgaaaaagca taaacataac aaacattggt 5580 ttctttaatg ttttacagat gtctttctgg gttccaaatt ctgcaaagct gtacttgcca 5640 ccgcctacac ctgtcacaca atttcttgac acggatgagt ttgtcacacg cactgacatc 5700 ttttaccaca caagcacaga ccgactgctg tttgtaggcc atccatattt tgacctaaaa 5760 aaaggagaca ccgttgttgt tcccaaagtg tccggcagtc aatttagggt tttcaggcta 5820 aaattccctg atccaaataa gtttagcttt cctacacaag atatatacaa ccctgagaag 5880 caaagactag tgtgggctgt acgtggaata gaaatatgta gaggacagcc cttgggtgta 5940 ggagtaacag gtcacccaag ctttaataag ttcaaagatg cagaaaatct aaaccaaaat 6000 tcagatcaaa aagaagatga tagggttaat gtatgtatgg accccaagca agttcagctt 6060 tttattgttg gctgtgtacc ttgtgatgga gagcattggg ataaggcaca agcttgtgaa 6120 ccacaaggac caggggattg cccacctatt gagctcaaaa acacaaaaat acaggatggt 6180 gaaatgtgtg atacagggtt tggtaatatg aattttgcag ctttgcaagc cagcaaatca 6240 ggagcccctt tggatattgt agaccaaata gtaaaatacc ctgattttct taaaatgggt 6300 aatgacccgt atggaaattc tatgttcttc tatgctaaaa gagaacagat gtatgtcagg 6360 catttatggg ctagagcagg gagagtagga gatgatattc ctacaggaga gtctggtagc 6420 ccatatttcc taccagccac tggacgagga cccctgccct cctcagtata tattggaagc 6480 cccagtggat ctctggtatc cagtgatcag cagatttata ataggccctt ttggatacaa 6540 agggcacaag gcagtaataa tggcatgtgc tggaacaatg agctttttgt tacagctgtt 6600 gatagtacta gaggcactaa ctttagtata tcagtacaca ctactgaccc agaggttaaa 6660 ccacaagaaa cttatacagc cactaagttt aagcactacc tcagacatgt ggaagaatgg 6720 gatttgtctt taattatgca gctttgcatt gtcaatctaa ctccagaatc aatagcttac 6780 ctgcacaata tgaatgaaag cattatagaa aactggaatt taggctttat tcagccaccg 6840 aatgatatag aggaccacta cagatttatt acctcattag ctactagatg ccccaaaaag 6900 acagacactc aggttaaaga agacccctat aaagacctaa agttctggga cgtggaccta 6960 acagaaaagt ttaccacaaa cctgaaccag cactccctgg gtagaaaatt tttgttccag 7020 ataggtagaa aagctaccaa acgctctgca ccgaaaacgg tcacatttga aaatactgaa 7080 ggtaaaaagg cgccaaagcg taggcggaaa aatgtgtagc tgccaacacc tgcagcagta 7140 tgagcaatat gataaataaa cttttcttta tgtaagatat gaatgttggc aataaaatgc 7200 agacaaacaa agcactgtta tctttggttt tttttcatct ccggcacttg tgtgtttgtg 7260 caagc 7265 //