ID U66304; SV 1; linear; genomic DNA; STD; VRL; 2319 BP. XX AC U66304; XX DT 01-NOV-1997 (Rel. 53, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 3) XX DE Chicken anemia virus cloned isolate 10, complete genome. XX KW attenuated; CAV; chicken anemia virus; cloned isolate 10. XX OS Chicken anemia virus OC Viruses; ssDNA viruses; Circoviridae; Gyrovirus. XX RN [1] RP 1-2319 RX DOI; 10.1007/BF01309811. RX PUBMED; 1605740. RA Meehan B.M., Todd D., Creelan J.L., Earle J.A.P., Hoey E.M., McNulty M.S.; RT "Characterization of viral DNAs from cells infected with chicken anaemia RT agent: sequence analysis of the cloned replicative form and transfection RT capabilities of cloned genome fragments"; RL Arch. Virol. 124(3-4):301-319(1992). XX RN [2] RP 1-2319 RX PUBMED; 18645774. RA Todd D., Connor T.J., Calvert V., Creelan J.L., Meehan B.M., McNulty M.S.; RT "Molecular cloning of an attenuated chicken anaemia virus isolate following RT repeated cell culture passage"; RL Avian Pathol. 24(1):171-187(1995). XX RN [3] RP 1-2319 RX PUBMED; 9343191. RA Meehan B.M., Todd D., Creelan J.L., Connor T.J., McNulty M.S.; RT "Investigation of the attenuation exhibited by a molecularly cloned chicken RT anemia virus isolate by utilizing a chimeric virus approach"; RL J. Virol. 71(11):8362-8367(1997). XX RN [4] RP 1-2319 RA Meehan B.M.; RT ; RL Submitted (07-AUG-1996) to the INSDC. RL Department of Veterinary Science, The Queen's University of Befast, Stoney RL Road, Stormont, Belfast, Northern Ireland BT4 3SD, United Kingdom XX FH Key Location/Qualifiers FH FT source 1..2319 FT /organism="Chicken anemia virus" FT /host="Gallus gallus" FT /isolate="cloned isolate 10" FT /mol_type="genomic DNA" FT /note="international patent application No. PCT/GB95/01795; FT derived from parental Cux-1 sequence, GenBank Accession FT Number M81223, following continuous cell culture passage" FT /db_xref="taxon:12618" FT repeat_region 171..189 FT /rpt_type=DIRECT FT repeat_region 192..210 FT /rpt_type=DIRECT FT repeat_region 213..231 FT /rpt_type=DIRECT FT repeat_region 246..264 FT /rpt_type=DIRECT FT repeat_region 267..285 FT /rpt_type=DIRECT FT variation 325 FT /replace="c" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 341 FT /replace="a" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT CDS 407..1057 FT /codon_start=1 FT /note="orf2; 24 kDa protein" FT /db_xref="InterPro:IPR004118" FT /db_xref="UniProtKB/TrEMBL:O41447" FT /citation=[1] FT /protein_id="AAC58476.1" FT /translation="MHGNGGQPAAGGSESALSREGQPGPSGAAQGQVILNERSPRRYST FT RTINGVQATNKFTAVGNPSLQRDPDWYRCNYNHSIAVWLRECSRSHAKICNCGQFRKHW FT FQECAGLEDRSTQASLEEAILRPLRVQGKRAKRKLDYHYSQPTPNRKKAYKTVRWQDEL FT ADREADFTPSEEDGGTTSSDFDEDINFDIGGDSGIVDELLGRPFTTPAPVRIV" FT variation 510 FT /replace="c" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT CDS 513..878 FT /codon_start=1 FT /note="orf3; 13 kDa protein" FT /db_xref="GOA:O41448" FT /db_xref="InterPro:IPR006858" FT /db_xref="UniProtKB/TrEMBL:O41448" FT /protein_id="AAC58477.1" FT /translation="MNALQEDTPPGPSTVFRPPTSSRPLETPHCREIRIGIAAITITLS FT LCGCANARAPTLRSATADNSESTGFKNVPDLRTDQPKPPSKKRSCDPSEYRVSELKESL FT ITTTPSRPRTARRRIRL" FT variation 628 FT /replace="g" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 721 FT /replace="c" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 864 FT /replace="t" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT CDS 880..2229 FT /codon_start=1 FT /product="52 kDa major capsid protein" FT /db_xref="GOA:O41449" FT /db_xref="InterPro:IPR007291" FT /db_xref="UniProtKB/TrEMBL:O41449" FT /protein_id="AAC58478.1" FT /translation="MARRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAF FT RKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIFLTEGLILPKNSTAGGYADHMYGARVAK FT ISVNLKEFLLASMNLTYVSKLGGPIAGELIADGSKSLAAENWPNCWLPLDNNVPSATPS FT AWWRWALMMMQPTDSCRFFNHPKQMTLQDMGRMFGGWHLFRHIETRFQLLATKNEGSFS FT PVASLLSQGEYLTRRDDVKYSSDHQNRWQKGQQPMTGGIAYATGKMRPDEQQYPAMPPD FT PPIITATTAQGTQVRCMNSTQAWWSWDTYMSFATLTALGAQWSFPPGQRSVSRRSFNHH FT KARGAGDPKGQRWHTLVPLGTETITDSYMSAPASELDTNFFTLYVAQGTNKSQQYKFGT FT ATYALKEPVMKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMYWGTQP" FT variation 965 FT /replace="a" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1252 FT /replace="a" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1301 FT /replace="a" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1311 FT /replace="c" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1639 FT /replace="g" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1673 FT /replace="a" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1797 FT /replace="a" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1840 FT /replace="c" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1841 FT /replace="g" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 1866 FT /replace="a" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT variation 2302 FT /replace="t" FT /note="compared to Cux-1 sequence in GenBank Accession FT Number M81223" FT /citation=[1] FT polyA_signal 2315..2319 XX SQ Sequence 2319 BP; 587 A; 667 C; 645 G; 420 T; 0 other; cgcagaaaat agatttatcg cactatcgaa ttccgagtgg ttactattcc atcaccattc 60 tagcctgtac acagaaagtc aagatggacg aatcgctcga cttcgctcgc gattcgtcga 120 aggcgggggg ccggaggccc cccggtggcc cccctccaac gagtggagca cgtacagggg 180 ggtacgtcat ccgtacaggg gggtacgtca tccgtacagg ggggtacgtc acaaagaggc 240 gttcccgtac aggggggtac gtcacgcgta caggggggta cgtcacagcc aatcaaaagc 300 tgccacgttg cgaaagtgac gtttggaaaa tgggcggcgc tagcctctct atatattgag 360 cgcacatacc ggtcggcagt aggtatacgc aaggcggtcc gggtggatgc acgggaacgg 420 cggacaaccg gccgctgggg gcagtgaatc ggcgcttagc cgagaggggc aacctgggcc 480 cagcggagcc gcgcaggggc aagtaatttt aaatgaacgc tctccaagaa gatactccac 540 ccggaccatc aacggtgttc aggccaccaa caagttcacg gccgttggaa acccctcact 600 gcagagagat ccggattggt atcgctgcaa ttacaatcac tctatcgctg tgtggctgcg 660 cgaatgctcg cgctcccacg ctaagatctg caactgcgga caattcagaa agcactggtt 720 tcaagaatgt gccggacttg aggaccgatc aacccaagcc tccctcgaag aagcgatcct 780 gcgacccctc cgagtacagg gtaagcgagc taaaagaaag cttgattacc actactccca 840 gccgaccccg aaccgcaaga aggcgtataa gactgtaaga tggcaagacg agctcgcaga 900 ccgagaggcc gattttacgc cttcagaaga ggacggtggc accacctcaa gcgacttcga 960 cgaagatata aatttcgaca tcggaggaga cagcggtatc gtagacgagc ttttaggaag 1020 gcctttcaca acccccgccc cggtacgtat agtgtgaggc tgccgaaccc ccaatctact 1080 atgactatcc gcttccaagg ggtcatcttt ctcacggaag gactcattct gcctaaaaac 1140 agcacagcgg ggggctatgc agaccacatg tacggggcga gagtcgccaa gatctctgtg 1200 aacctgaaag agttcctgct agcctcaatg aacctgacat acgtgagcaa actcggaggc 1260 cccatcgccg gtgagttgat tgcggacggg tctaaatcac tagccgcgga gaattggcct 1320 aattgctggc tgccgctaga taataacgtg ccctccgcta caccatcggc atggtggaga 1380 tgggccttaa tgatgatgca gcccacggac tcttgccggt tctttaatca cccaaagcag 1440 atgaccctgc aagacatggg tcgcatgttt gggggctggc acctgttccg acacattgaa 1500 acccgctttc agctccttgc cactaagaat gagggatcct tcagccccgt ggcgagtctt 1560 ctctcccagg gagagtacct cacgcgtcgg gacgatgtta agtacagcag cgatcaccag 1620 aaccggtggc aaaaaggcca acaaccgatg acggggggca ttgcttatgc gaccgggaaa 1680 atgagacccg acgagcaaca gtaccctgct atgcccccag accccccgat catcaccgct 1740 actacagcgc aaggcacgca agtccgctgc atgaatagca cgcaagcttg gtggtcctgg 1800 gacacatata tgagctttgc aacactcaca gcactcggtg cacaatggtc ttttcctcca 1860 gggcagcgtt cagtttctag acggtccttc aaccaccaca aggcgagagg agccggggac 1920 cccaagggcc agagatggca cacgctggtg ccgctcggca cggagaccat caccgacagc 1980 tacatgtcag cacccgcatc agagctggac actaatttct ttacgcttta cgtagcgcaa 2040 ggcacaaata agtcgcaaca gtacaagttc ggcacagcta catacgcgct aaaggagccg 2100 gtaatgaaga gcgatgcatg ggcagtggta cgcgtccagt cggtctggca gctgggtaac 2160 aggcagaggc catacccatg ggacgtcaac tgggcgaaca gcaccatgta ctgggggacg 2220 cagccctgaa aagggggggg ggctaaagcc cccccccctt aaaccccccc ctggggggga 2280 ttccccccca gaccccccct taatatagca ctcaataaa 2319 //