ID L31579; SV 1; linear; genomic DNA; STD; PRO; 2804 BP. XX AC L31579; XX DT 15-APR-1994 (Rel. 39, Created) DT 06-JUL-1999 (Rel. 60, Last updated, Version 4) XX DE Butyrivibrio fibrisolvens plasmid pOM1, complete genome. XX KW . XX OS Butyrivibrio fibrisolvens OC Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; OC Butyrivibrio. OG Plasmid pOM1 XX RN [1] RP 1-2804 RX PUBMED; 9143105. RA Hefford M.A., Kobayashi Y., Allard S.E., Forster R.J., Teather R.M.; RT "Sequence analysis and characterization of pOM1, a small cryptic plasmid RT from Butyrivibrio fibrisolvens, and its use in construction of a new family RT of cloning vectors for Butyrivibrios"; RL Appl. Environ. Microbiol. 63(5):1701-1711(1997). XX FH Key Location/Qualifiers FH FT source 1..2804 FT /organism="Butyrivibrio fibrisolvens" FT /plasmid="pOM1" FT /mol_type="genomic DNA" FT /db_xref="taxon:831" FT misc_feature 267..286 FT /note="core sequence of RSa recombination site, 19 of 10 FT nts identical to RSa sites of plasmids pT181 and pE194.; FT putative" FT RBS 437..441 FT /standard_name="Shine-Delgarno" FT /note="putative" FT gene 449..1714 FT /gene="pre" FT CDS 449..1714 FT /codon_start=1 FT /transl_table=11 FT /gene="pre" FT /product="plasmid recombination protein" FT /note="putative; Pre protein; ORF1" FT /db_xref="GOA:Q52050" FT /db_xref="InterPro:IPR001668" FT /db_xref="UniProtKB/TrEMBL:Q52050" FT /protein_id="AAB57761.1" FT /translation="MGYGIMRCEKRKIQACGGIQAENNRQADKQKDFKASDIDWDRTNE FT NEFLIQSMNLQQDIKKELKEHGIDKWRKDAVVCIDGLYTASPEFFEGKTKEECMEYFKD FT CLEYHEKTYGVTINAVIHFDEATPHMHCQSVPLVEREDGSFKLCAKELMGNIKQYHQRQ FT NEFHEEVGLKYGLERGQVQDREERREHLDTLEFKTQEKTKELTQSIEAVETLKLEGAKL FT QGRIESKQNDLEAVEGEIERSRGKLEKLEGQVKKAKDFKKEKADKDILGRPRDRVTLDW FT TEYRSLQKTAKKVEDVEREESLLNYRERQFEQNKAEIQPNIDAAAEDREKAAKELQQAR FT EYKDNLESYILGTAGKQAEEMFQEFKNSLAKGYDMDKLEFIEKELQKYNVGGKSLFDIV FT EEKFQEHIEEIEHQARSWGPEL" FT gene complement(1909..2535) FT /gene="rep" FT CDS complement(1909..2535) FT /codon_start=1 FT /transl_table=11 FT /gene="rep" FT /product="plasmid replication control protein" FT /note="TTG start codon; putative; Rep protein; ORF2" FT /db_xref="GOA:Q52051" FT /db_xref="InterPro:IPR001808" FT /db_xref="InterPro:IPR008813" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q52051" FT /protein_id="AAB57762.1" FT /translation="MAKNELSQHVTTKKVKAIGTETYINVATGEAEEFQVTKIEERDFN FT FTKVWIRNFVATLDLVGNQKTRLVYWIIDNLNHNNQLICTNRLMAEETGISLATVSVTM FT KALQDANFLKKQANGVYVINPDILFKGTQKARLNILNQFSELGAEPQELSDEQKIQNIT FT KTIAQLSKQLEALQSKSSVVDTEIEGQYTLLPDGSIVQKAVNKKE" FT RBS complement(2544..2549) FT /standard_name="Shine-Delgarno" FT /note="putative" XX SQ Sequence 2804 BP; 965 A; 499 C; 640 G; 700 T; 0 other; tctggggaat acaacggaag actttctcct gtttaacata caaacactgc gtacgcacgc 60 agtgtgaata tattgaacaa ggagaagggt taagggtgaa agcctgtagt tgtaggcaca 120 gacgcaagtt caagcgaagg ttggtagttg gttcaggcgg tcagcctgat ccaaatatca 180 aactgaggtt gaacccccaa aggcttcgca gaagactttg gagctgtcgg cagacccctc 240 ggagagcgag cgggctttac ggagtaaagt ctagtgagtt agactttcac ttgaaagttt 300 tccgaaacga tggtatatta caagtgagag gaagttctgt tcaatgcgat agccattgat 360 caggaacgac ctcgaaacga agtaataaac cagagtaagg aagaccgaaa gggaaaggct 420 tactcactag aagcgaagag gtatacttat gggatatgga ataatgcgct gtgagaagcg 480 taaaatacag gcttgcgggg gcatacaagc tgagaataac aggcaagccg acaaacagaa 540 ggattttaag gcaagtgata ttgattggga tagaacgaat gaaaatgagt tcttgataca 600 atcaatgaac ttgcagcagg acatcaagaa agaactcaag gagcacggta ttgataaatg 660 gcgtaaggac gcagtagtct gcatagatgg gctatataca gcctctcctg agttctttga 720 aggcaagacc aaagaagagt gtatggagta cttcaaggat tgccttgaat accacgaaaa 780 gacctatggt gtcacaatca atgcggtaat tcactttgat gaggctaccc cacatatgca 840 ctgccagagc gtgcctctgg tagaacgtga agacggttct ttcaagctgt gtgctaaaga 900 gctaatggga aatatcaaac agtatcatca aaggcagaat gagttccacg aggaagttgg 960 cttgaaatat ggactcgaac gaggacaggt tcaagacaga gaggaacgta gggaacacct 1020 tgatactttg gagttcaaaa cccaagagaa gaccaaagag cttacacaaa gcattgaagc 1080 tgtagaaact ctcaaattag aaggtgcaaa gcttcaaggt aggatagagt ccaaacagaa 1140 cgatttagaa gccgtagaag gcgaaattga gcgttctagg ggcaagcttg aaaaactgga 1200 aggtcaggtt aagaaagcca aggatttcaa gaaggagaag gctgataagg atatacttgg 1260 cagacctagg gacagagtaa cactcgattg gactgagtat agaagccttc aaaagaccgc 1320 taagaaggtt gaagacgttg aacgcgagga atccttgctg aactacagag aacgccaatt 1380 tgagcagaat aaggctgaaa tacagcctaa tattgatgca gcagctgagg atagagagaa 1440 agctgctaaa gagctgcagc aagctagaga atataaagat aatcttgaaa gctatatcct 1500 tggaactgct ggaaaacagg ctgaagagat gttccaggag ttcaagaata gcctggctaa 1560 aggctacgat atggataagc ttgaattcat tgaaaaagag cttcaaaagt acaatgtggg 1620 tggcaagtca ctatttgaca ttgtggaaga gaagttccaa gagcatatcg aagagattga 1680 acatcaagca agaagctggg gtccagagct ataaaaaaaa gaggatctac gtccaatgac 1740 gtaggccctc ttttttgttg tgttcttcaa tgtcgatagt gcgtttagcc atagcattaa 1800 gcttttcatc aagaagatga tacaaatagc tgtctttagg agcttcccta tacagcttca 1860 taaactgttc ttctgtaagt tctaatctga ttttcttagt agccataatt actccttctt 1920 gttaacagcc ttctgaacaa ttgaaccatc gggaagtagt gtgtactgtc cctcaatctc 1980 agtatcaact actgaggatt tagactgtag ggcttcaagc tgtttagaaa gctgtgcaat 2040 agtcttagtg atattctgaa tcttctgttc atcagaaagc tcctgaggct ctgcgccaag 2100 ctctgagaac tgattaagga tattaagacg agctttctgt gtgcccttga agaggatatc 2160 cggattgata acatacactc cattagcctg ttttttcaag aaattagcgt cctgtaaggc 2220 tttcatagta actgatacag tagcaaggga gatacccgtc tcctcagcca taaggcgatt 2280 agtacagata agctggttat tatggtttaa gttgtcaatt atccaataga ctaacctagt 2340 cttctgattg ccaactaaat caagagtagc aacgaagttt ctaatccaca ccttagtgaa 2400 gttgaaatca cgttcctcaa tcttggtaac ttggaactct tccgcctcgc ctgtagcgac 2460 attgatataa gtctcagtac caatagcttt aaccttcttg gtagtcacgt gctgtgacaa 2520 ttcatttttt gccaatttaa tatacctccg ttatgaaaat gattaacaca aattaaatat 2580 ggtaaaaaaa ataaaaaact aataaaaaac gataaaatgt tctaacaaga ctataacaaa 2640 ttataataca gattacaaca tttgttataa tttaattaga acatttgtag ttaaaaatta 2700 gaacaaatgt aattaaaaat tagaacaagc aaaatcccga taaagcccgt aaaatcaaca 2760 aaaacagcta aaaaaataaa aaatcactct tatctataat gggg 2804 //