ID L31578; SV 1; circular; genomic DNA; STD; UNC; 2970 BP. XX AC L31578; XX DT 15-APR-1994 (Rel. 39, Created) DT 18-OCT-2008 (Rel. 97, Last updated, Version 6) XX DE Plasmid pRJF2 from Butyrivibrio fibrisolvens, complete sequence. XX KW . XX OS Plasmid pRJF2 OC other sequences; plasmids. OG Plasmid pRJF2 XX RN [1] RP 1-2970 RX DOI; 10.1016/0378-1097(95)00193-9. RX PUBMED; 7649434. RA Kobayashi Y., Forster R.J., Hefford M.A., Teather R.M., Wakita M., RA Ohmiya K., Hoshino S.; RT "Analysis of the sequence of a new cryptic plasmid, pRJF2, from a rumen RT bacterium of the genus Butyrivibrio: comparison with other Butyrivibrio RT plasmids and application in the development of cloning vector"; RL FEMS Microbiol. Lett. 130(2-3):137-143(1995). XX RN [2] RP 1-2970 RA Kobayashi Y., Forster R.J., Hefford M.A., Teather R.M., Wakita M., RA Ohmiya K., Hoshino S.; RT ; RL Submitted (05-APR-1994) to the INSDC. RL Faculty of Bioresources, Mie University, 1515 Kamihama, Tsu 514, Japan XX FH Key Location/Qualifiers FH FT source 1..2970 FT /organism="Plasmid pRJF2" FT /plasmid="pRJF2" FT /host="Butyrivibrio fibrisolvens" FT /mol_type="genomic DNA" FT /db_xref="taxon:35400" FT repeat_region complement(join(2950..2970,1..58)) FT /function="unknown" FT /rpt_type=INVERTED FT /note="putative" FT repeat_region 1162..1240 FT /function="unknown" FT /rpt_type=INVERTED FT /note="putative" FT -35_signal 1259..1264 FT /note="putative" FT -10_signal 1285..1290 FT /note="putative" FT RBS 1349..1353 FT /note="putative" FT CDS 1359..1817 FT /codon_start=1 FT /transl_table=11 FT /product="putative plasmid recombination protein" FT /db_xref="UniProtKB/TrEMBL:Q52203" FT /protein_id="AAA99530.1" FT /translation="MTITEFAESRQVQPQAISRYIGRHPEKFNGHTEKKGKTVELDDIA FT LEFLEKKYPLPAPVQIIEDTESRQKLIKAQELIIQLQGKLMDAQSQIAEAEATKMLLED FT KNVQIKKYELTEAEDKKTIDELKQQVANLSTELTKEKSKTWIDKLLKR" FT rep_origin 1809..2150 FT /note="putative" FT CDS 2046..2930 FT /codon_start=1 FT /transl_table=11 FT /product="putative plasmid replication protein" FT /function="plasmid replication" FT /note="no identifiable RBS, -10, or -35 sequence" FT /db_xref="GOA:Q52204" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q52204" FT /protein_id="AAA99531.1" FT /translation="MPPNIRPTYLLRGRNTGIINGGGYEMKNNKYEIAIERDYKVVKAN FT EIIQRAQCDLGLLEQKTFCYAVSKVKPDDIAGTEYTFSINEYCDVCGINRNDGRTIENV FT KSALKRLRDKSFYLQDENGNYVLIGWLGKARVSPKSGKIKIKFDEDMQKYLTGLYNNYT FT QYSLLCVLPMKSAYSIRLYELLKSYAGLHRKEFEIESLKAKLCAPYSDFYEVRRKVLDV FT AVREINLYTDLEVSWQPINKGRKVVKIHFDIKQRNSWGIAKAGARATQALDGIEGQIRF FT DLEGNLSEERKTR" XX SQ Sequence 2970 BP; 1084 A; 465 C; 582 G; 839 T; 0 other; aattcacttg gcaaacgtat tttgttgcct agtgaagttc gaatcttttt agccgcttac 60 aaactattcc agcttgctgg atataattaa taaatcattt ttgatttacg gaagatttta 120 aaaaaagtag ctcgaagagc gttgctcaaa attttaattt tgattgggga ttggggatat 180 tccccaacaa gtttttttac aaaaaaagca aatggatatc catttgccct gcttgccaag 240 aatgttagta gcaaaaaatc aaaatgtgta aaaaaatatt tataaaatac tgtgaccatg 300 atggggcgat aaaataaaag attagaataa aaaagctgat agttcttatc atcagctttt 360 ttatttacaa gaattcgaaa acaaagtata cttagattac aaagattact aagtaatgca 420 agtatagtga gtaagagaaa ggtggactta ttatggctaa aacaaatact gtgacatgct 480 cctttactat gaatcgtgat ttgtataatc aatacaagag cataattgtt aggagcggaa 540 aaaatgttaa aggggatttg gttagatata tgcaagatgt gattgcatat gaaacgccaa 600 atgctgaaac aattgaagca ataaaagaag tagaacagat gaaatctaat ccatccatag 660 gcaaggctta taacgacgta gatgagatga tgaggactta ttgaagtgaa atacacgata 720 aagcctacca acaaatttca aaaggatttg aagcgcgttc aaaagcgtgg ttatgatatg 780 aatctgctaa cagacatagt caagaagtta gcaaatggag aacagcttcc gagagaaaat 840 cgtgaccatc ctctgacggg aaattataag ggcacgagag aatgtcatat acaaccagat 900 tggcttttag tgtacgaaat caatgaagct gatttatatt tatatctgac aagaactggc 960 acacatagcg atttatttga taaatagcca gttctttcct tgcttcctct taatttaatg 1020 caaacgaaat agaaaaagct aggaactgcc attcctagct tttttgttag cttgtaaaga 1080 taataatctc atttctttgc ccattttcat tataacaagt cagtttaaat aggcaaacac 1140 cagcaagctg gtgacgtcct caagcggcta aaaagattcg aacttcacta ggcaacaaaa 1200 tacgtttgcc aagtgaattc gactttttaa cctacagccc gaggatatct gaaaagcctt 1260 gttaaacgcc taattttggc atattataat atacaaaata tttcgcgttc catatactgt 1320 acttgtacag tattttgtac ataaaagtga ggtaaaccat gactattact gaatttgcag 1380 aatcaaggca agtgcaacca caggcaattt ctcgatatat aggcaggcat ccagaaaaat 1440 tcaacgggca tactgagaaa aaaggcaaaa cagtagaact tgatgatata gcattggaat 1500 ttctagaaaa aaagtatcct ttgcctgcac ctgtacagat tatagaggat acagagagcc 1560 gtcaaaagtt aattaaagcg caggaactga taatacagct acaaggcaag ctaatggacg 1620 cacagagcca aatagcggaa gcagaagcaa caaagatgct cttagaagat aaaaacgttc 1680 aaattaagaa atacgagctc acagaggcag aggataaaaa aacaattgat gaattaaaac 1740 aacaagttgc taatttatct acagaattaa caaaagaaaa atctaaaact tggattgata 1800 agttattaaa aaggtgactt taaagagtca ctttttttgt tgtaaaaata aataattatt 1860 tttcttattt ttcttatttt aggggacccg aaagtccgct aaagcccgtg gttacaaggt 1920 ttttattccg acttttaaca cgttttattc cgacttttaa cacgttttac tccgactttt 1980 aacacgttga taacttttat tgggagattt ggaacgtaat tttattccga cctctaacac 2040 gttctatgcc tcccaatatc cgacctacgt atttgctaag aggtcggaat actggtatta 2100 taaatggcgg aggatatgaa atgaaaaaca ataagtatga aatagcaata gaacgtgatt 2160 ataaggttgt taaagcaaac gaaataattc agcgcgccca atgcgatttg ggattgttag 2220 aacaaaaaac gttctgctat gcagtttcga aagtcaagcc tgacgatatt gcgggtacag 2280 aatatacatt ttcaataaat gagtattgtg acgtttgtgg cattaatcgt aacgatggtc 2340 gaacaattga aaatgtaaaa tcagctctaa aaagacttcg cgataaatca ttttacctac 2400 aggacgaaaa tgggaactat gtgcttatag gttggcttgg caaggctcgt gtaagtccaa 2460 aatcgggcaa aataaagata aagtttgacg aggatatgca gaaatatctt actggcttat 2520 acaataacta tactcagtat agtctgctat gcgttttgcc aatgaaatcc gcctattcaa 2580 taagactata tgagctgctt aagagttacg ctggattgca tcgcaaagaa tttgaaatag 2640 aaagcctaaa agcaaaactg tgcgctccat acagtgactt ttacgaggtg agacgaaagg 2700 ttttagatgt agcggtaaga gaaattaatt tatatacgga tttagaagtg tcatggcagc 2760 caattaataa aggccgtaag gttgtcaaaa tacactttga tataaaacaa cgtaatagtt 2820 ggggaattgc aaaagcagga gccagggcaa cccaagcgct agacggaatc gaaggtcaaa 2880 tcagatttga tctggaaggt aatttgtctg aagaaagaaa aactcgttga tccaatttta 2940 taagtttgtg ggctgtaggt taaaaagtcg 2970 //