ID K02708; SV 1; circular; genomic DNA; STD; VRL; 7868 BP. XX AC K02708; XX DT 02-JUL-1986 (Rel. 09, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 4) XX DE Cottontail rabbit (Shope) papillomavirus, complete genome. XX KW complete genome. XX OS Cottontail rabbit papillomavirus OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC Kappapapillomavirus. XX RN [1] RP 1-7868 RX DOI; 10.1073/pnas.82.6.1580. RX PUBMED; 2984661. RA Yaniv M., Danos O., Giri I.; RT "Genomic structure of the cottontail rabbit (Shope) papillomavirus"; RL Proc. Natl. Acad. Sci. U.S.A. 82(6):1580-1584(1985). XX DR GOA; P03102. DR GOA; P03108. DR GOA; P03112. DR GOA; P03121. DR GOA; P03127. DR GOA; P03130. DR InterPro; IPR000148; Papilloma_E7. DR InterPro; IPR000427; Papillomavirus_E2_C. DR InterPro; IPR000784; Late_L2. DR InterPro; IPR001177; DNA_helicase_E1_C_Papillomavir. DR InterPro; IPR001334; E6. DR InterPro; IPR001866; Papillomavirus_E2_N. DR InterPro; IPR002210; Capsid_L1_Papillomavir. DR InterPro; IPR011222; dsDNA_vir_gr_I_capsid. DR InterPro; IPR012677; Nucleotide-bd_a/b_plait. DR InterPro; IPR014000; DNA_helicase_E1_N_Papillomavir. DR InterPro; IPR014015; Helicase_SF3_DNA-vir. DR InterPro; IPR016393; Rep_E1_papillomaV. DR InterPro; IPR020238; Papillomavirus_E5_kappa. DR UniProtKB/Swiss-Prot; P03102; VL1_CRPVK. DR UniProtKB/Swiss-Prot; P03108; VL2_CRPVK. DR UniProtKB/Swiss-Prot; P03112; VE1_CRPVK. DR UniProtKB/Swiss-Prot; P03121; VE2_CRPVK. DR UniProtKB/Swiss-Prot; P03124; VE4_CRPVK. DR UniProtKB/Swiss-Prot; P03125; VE5_CRPVK. DR UniProtKB/Swiss-Prot; P03127; VE6_CRPVK. DR UniProtKB/Swiss-Prot; P03130; VE7_CRPVK. XX CC [1] notes and discusses several ORFs on the sense strand of the CC CRPV genome. XX FH Key Location/Qualifiers FH FT source 1..7868 FT /organism="Cottontail rabbit papillomavirus" FT /mol_type="genomic DNA" FT /db_xref="taxon:10623" XX SQ Sequence 7868 BP; 2252 A; 1725 C; 1929 G; 1962 T; 0 other; gctaacaata attaagaaac atgtaatggc cagaaaccga tatcggttgc tggcactgta 60 tatctgagat cgcatcggtt gctggcactg tgtatctgag atcgcaacgc attgccagga 120 atttctgcat ataagacaag aaacttagag cagatggaga actgcctgcc acgctcgcta 180 gagaagctgc agcaaatatt acaaatatca ttggaggact tgccgtttgg ttgtatattt 240 tgcgggaaat tgcttggggc tgcagaaaaa caattgttca aatgcacggg gctatgcatt 300 gtatggcata aagggtggcc gtatgggacc tgcagagact gcactgtatt gtcttgtgct 360 ttggatcttt attgtcacct tgctcttact gctcctgctt tggaggctga agcgctggtt 420 ggtcaggaaa tatctagctg gttcatgcgt tgtacagttt gcggaagaag attaactatt 480 ccagaaaaga ttgaattaag agctagaaat tgcacgcttt gttgtattga taaaggtcaa 540 tatttccagt ggaggggtca ttgcagttct tgcaaactgt cagaccaagg tgatttgggg 600 ggctatcccc cgagtcccgg cagtcgctgc ggggaatgtg acgagtgttg cgtcccggac 660 ctgacacatc taactccggt ggatctggag gaacttggat tatatccagg ccccgaagga 720 acctatccgg atttagttga cctagggcca ggcgtttttg gggaagaaga cgaggagggg 780 ggtgggctgt ttgacagctt cgaggaggag gatcctggac ccaaccagtg tgggtgtttt 840 ttttgcacca gctatccgtc cggaacaggt gatacagata taaatcaggg accggcagga 900 gctgcaggga ttgcactgca gtcagatcca gtctgtttct gtgagaattg tattaacttc 960 acagaattta gatgatagta tttctgctat cctgtgcgca gggctgcttc tttatctttt 1020 ttctttatat actactgttt ttccttctgt actggcttta tcgaattctg caagatgata 1080 ggcagaactc ctaagcttag tgagctggtt ttaggtgaaa ctgctgaagc gcttagtctg 1140 cattgcgacg aagcattaga gaatttaagt gatgatgatg aggaggatca tcaagataga 1200 caggtgttca tagaaaggcc ctatgcagtg tccgtgccat gtaagcgctg taggcaaact 1260 atcagcttcg tctgcgtctg tgctccagaa gccataagaa ccttgaatcg actgctatcc 1320 gcatcgcttt ccctggtgtg cccggagtgt tgtaactgaa aatggctgaa ggtacagacc 1380 ctttagatga ctgtgggggg ttcttagaca cggaagcgga ctgtttagac tgtgacaacc 1440 ttgaggagga cctgacagag ctgtttgatg ctgacactgt aagcagttta ctagatgata 1500 cagatcaggt gcagggaaat tccctggaac cttttcagca tcatgaggcg actgagacct 1560 tgaaaagcat agagcatctc aagagaaagt atgtcgatag tcctgataag agcctgggta 1620 tcgacaactc cgtcaatgcc ttgagtccaa gattacaagc tttctcactg tcaggacaaa 1680 aaaaggctgt taaaaagaga cttttcggta ctgacggaga tgaagctgct tctggtgctg 1740 agtcgttaca ggtagaatcg ggatttgggt ctcaacaaag cgtatcagat acacctgtga 1800 ctgacatttt aaatgcaaat acagcaagag tcaaacattt gttgttattt aggcaagctc 1860 acagtgttag cttttcggag ctcaccagaa catttcaaag tgacaagact atgagttggg 1920 attgggtagg tgggctggcg gacattcatg taagcgtgtt ggagagcttg cagacatctc 1980 tgagaagtca ttgcgtatat gttcagtatg atctcaattt tgcagagaca aatgcttcat 2040 ctctgctgct gctcctgaga tttaaagcac aaaaatgtag ggacggggtt aaagcgctgc 2100 tatcccaatt gttgggagtt caagatctaa aagttttatt agaacctcca aaaacaagga 2160 gtgtcgctgt tgcattgttc tggtacaaaa gggcgatggt ttctggggtt tttagctacg 2220 gtccaatgcc tgaatggata acgcagcaga caaatgttaa ccatcaaatg ttgcaggaaa 2280 agccgtttca gttgtctgtc atggtccagt gggcatatga taaccacctt caggatgaaa 2340 gtagtattgc atacaagtat gcaatgctcg ctgaaactga tgagaatgca agagcgtttc 2400 tagcttctaa ttctcaggcg aagtatgtta gggactgttg caacatggtc agactctatt 2460 taagagcaga aatgagacag atgaccatgt ctgcatggat aaactacaga ttggatggga 2520 tgaacgatga tggggattgg aaggtggtcg tgcattttct gcggcaccaa cgagtggagt 2580 tcataccttt catggtgaag ctgaaggcct tcctaagagg aacaccaaaa aaaaattgca 2640 tggtgtttta tgggccacca aatagtggga agtcatattt ttgcatgagc ctcataagat 2700 tacttgcagg acgggtcttg tcgtttgcaa acagcagaag ccatttttgg ctgcaaccat 2760 tagcagacgc caagctagcg ctcgtggatg atgctacatc cgcgtgctgg gatttcattg 2820 atacatacct cagaaatgcc cttgatggca atcccatatc ggtggacctg aagcacaagg 2880 caccaataga gattaagtgc cctcccctcc tgataaccac aaatgtggac gtcaaatcag 2940 atgatagatg gagatactta tttagtagaa tttgtgtgtt taactttttg caagaattgc 3000 ccattagaaa tgggacacct gtgtatgaat taaatgatgc aaactggaaa tcttttttta 3060 aaaggttctg gtccacctta gaactaagcg acccggaaga cgagggtgac gatggaggct 3120 ctcagccagc gcttagactc catacaggag gaacttctca gtctctatga gaaggagagc 3180 acgagtttgg agtcccagct acagcactgg aacttactaa gaaaagaaca ggtcctttta 3240 catttctgta aaaaacacgg gatcaggcaa ctgggctaca cgcctgtccc gtctcttctt 3300 acctcacagg aatgtgcaaa gcaagccata gaaatggtgc tgtacattga aagcctactc 3360 aggtccccgt attcagatga gccatggaca ttgcaggata ccagtagaga aaggttcgaa 3420 agccctccgc aaaagacatt caaaaagaac ccagctattg ttgaggttta ctatgatggt 3480 gacagaggga acaacaatga atacacactg tggggtatat ttattattgg gaacgctgat 3540 ggggagtggg ttaagactga aagtggagtg gactatagag ggatttatta tgtggactct 3600 gaaggaaact atgtgtatta tgtggacttc tcaaccgacg cgggacgttt tgctgctaat 3660 ggacactatg acgtggtgtt tcaaaacatg cgcctctctt cttctgtcac cagctccccc 3720 cagccgctgg tcagtgcccc tgaagacacc gtccccgaag aggcccccga cagtgcagtg 3780 cccgccgctc aaaagaaaac agggcccaaa accacgcgta cactgggcag acgaaggtca 3840 aggtcaccag gggtgcaacg aaggccggca aagcaacgaa aacaggccgc cccggacgaa 3900 gcggattctg ctgccgggga catcagaccg cctgctccag aggacgttgg acgaagaact 3960 acgacggttg gaagaacacc tcccgggcgg aatagacggc ttcgcgagct tataacagaa 4020 gctagcgatc cgcccgtgat ttgcttgaaa ggggggcaca accagcttaa gtgcttaagg 4080 tatcgcctta aaagcaagca ctcctcacta ttcgactgca taagcactac ttggagctgg 4140 gttgacacaa cgagcacatg caggctaggt agcgggcgca tgcttataaa gtttgcggac 4200 tctgagcagc gcgataagtt tcttagcagg gtcccactcc catcaacaac gcaggtgttt 4260 ttagggaatt tttatgggct ttagtgacgt gtatgcatgt aacccattcc catcagcagc 4320 ttttgtaacg caacgttttt ttgtaccaat aaatcttgca catacgcaaa aggtgtcatg 4380 gttgcacggt cacgaaaacg cagggctgca ccacaagaca tttatccaac atgcaaaatt 4440 gctggcaatt gcccagctga catacagaat aaatttgaaa acaaaacaat tgcagataaa 4500 attctgcagt atggcagcct tggtgttttc tttggaggac ttggaatcag tagtgccgga 4560 ggttctgggg gtcgactagg gtacacccca ttatctggag gggggggacg tgtcatagca 4620 gcagccccag taagacctcc cataacaaca gaatctgtag gccctctaga tatagtgcct 4680 gaggtagctg atcctggggg tcctactcta gtgtcactac atgaactgcc tgcagaaaca 4740 ccatatgtat caagcacaaa tgttacaggg gatggcgcag cagagcccct tccagctggt 4800 catgggggaa gccagatttc agacgtcaca tctggtacat ccggcacagt gtccagaaca 4860 cacattaata accctgtatt cgaggctcca atgaccggtg atcaggatgt ctcggatgtg 4920 catgtatttg ctcactctga aagtagtata actatcaacc aaacagaaaa cacgggcgga 4980 gagctaatag agatggtccc cctcagacac ccccctcgca gtgagggaga tttcagggaa 5040 acatccttca gcacaagcac accaatccct gatagatctg cgttgcgatc tataaacgta 5100 gctagcagaa gatatcagca ggtacaagta gaaaaccctg ctttcctgaa caggcccagg 5160 gaactggtgc aattcgaaaa cacatttgac aatcctgctt ttgtggatga tgagcaacta 5220 agcctccttt ttgaacagga tctagacacc gtagttgcaa ctccagatcc tgcgttccag 5280 gatgttgtgc gtttaagtag gcctagtttc actcaatcca gagctggtag ggttcgcgtc 5340 agccgcctgg ggaggacgct aacaatgcaa acacgcagtg gtaaggcctt tgggcctgcc 5400 aaacacttct actatgagct ttcaagcata gcagaaggtc ccgagccaga catcctcatc 5460 cccgaatcag aacaggaaac atcattcaca gatgccacat ctaaagacac acaacaggaa 5520 gcagaagtgt atgcagatgg ttcaaccctg gaaactgaca catcggcaga tgaaaacttg 5580 acacttgtct tttcagacag aggcaggggt cagggttcac atgtacctat tccaggcaag 5640 tccacaattg ggggtcctgt aaatattggg gacagcaaat actatactct gaaccctgga 5700 gaaactacaa gctttgaagc agatgtaatt tcacctgttt tcatatttga gggtaacgca 5760 gatggcactt actatctaga ggaacctcta cgaaagaaaa gacgcaaatc tatcttttta 5820 cttgcagatg gcagtgtggc tgtctacgca gaataagttt tacctgccgc ctcagcctgt 5880 cacaaagata cctagcacgg atgaatacgt tactcggaca aacgtctttt attatgcatc 5940 cagtgaccgg ctactcacag tgggacatcc atactatgaa atacgtgata aaggcaccat 6000 gcttgttcca aaggtttctc caaaccaata cagagtattt agaatcaaac tccctgaccc 6060 taacaagttt gcatttggtg acaagcaact atatgatcca gagaaggaac ggcttgtgtg 6120 gtgccttaga ggtattgagg tcaatcgagg ccagcctcta ggagtcagtg tcacaggaaa 6180 ccctatcttt aataaatttg atgatgtcga gaatcccaca aagtattaca ataaccatgc 6240 agaccagcaa gactacagaa aaagcatggc gttcgacccc aagcaagtgc agctgttaat 6300 gcttggatgc gtccctgcca caggagaaca ctgggctcag gcaaagcagt gtgcagagga 6360 tccaccacaa cagaccgact gtccccccat tgaactagtg aacactgtta tagaagatgg 6420 ggacatgtgt gaaataggct ttggggcaat ggaccataaa acattgcagg ccagtttatc 6480 agaggttccc cttgagttag cacagtcaat cagcaagtat ccagactatc taaaaatgca 6540 aaaagatcag tttggggatt ctatgttctt ttatgctaga agagagcaga tgtatgctag 6600 acatttcttc agcagggcag gaggggacaa ggaaaatgtg aagagcaggg cctacataaa 6660 acgcacacag atgcagggag aggcaaatgc caacattgca actgacaatt actgcatcac 6720 acctagtgga tctttggtct ctagcgattc acaggttttt aaccgtgcat attggctcca 6780 gaaagctcaa ggcatgaaca atggagtttg ctgggacaat caaatttttg tgactgtggt 6840 agataacacc aggggtacaa tattaagtct tgtcacaaaa tccaaggagc aaatcaagaa 6900 gacccatgga aaaacagtac atttttcttc ctatctaagg catgtggagg agtatgaact 6960 gcaatttgtg ctccagctat gtaaggtcaa gttaacaccc gaaaacctat catacctaca 7020 tagcatgcac ccaacaatca tagataattg gcaattgtca gtgtcagctc agcccagtgg 7080 aacgctagaa gaccagtaca gatacctgca gtccattgca accaaatgtc cacccccaga 7140 acctcccaaa gaaaacactg acccatataa aaactataag ttttgggaag tagatttgtc 7200 tgagaagcta tctgatcagc tagatcagta tccacttggc agaaagttcc taaatcaaag 7260 tggcctgcaa agaattggta caaaaagacc tgcacctgca cctgttagta ttgtgaaatc 7320 atctaaacgc aagagacgta cttaattgta tattattgga tgtgtattta atacctcata 7380 acttataaat atactaaata aagtttaaaa ccgatgcata ctagtattac ttcttttttg 7440 tgaagctctt tgcgaccgca cccggtggca tgtgatgaca catcacacag taagccttga 7500 gagaacgcca gaggttgtaa acatcctgtt ccggctggca ctgagcctga tcgcaggcag 7560 tgatcttaac cgtaagcgtt ctcattaatt ctggggtatt tccaagaaaa acgttatcgc 7620 ttttggccac cgtactcggt gtcagcaaat accaagccaa gatctttttt ggtgccaaaa 7680 atctaagcaa ccgctcccgg tcccggcaac cgctcccggt cttgcaaccg cccacgttcg 7740 accgctcccg gtcttgcaac cgcccacgtt cgaccgctcc cggtcttgca accgccaggt 7800 gtgcatgact gtaagtattg actcacaccg catgcggtgt tatgcacttt gatttaatga 7860 tggttgtt 7868 //