ID JN088541; SV 1; linear; genomic RNA; STD; VRL; 8289 BP. XX AC JN088541; XX DT 14-SEP-2011 (Rel. 110, Created) DT 05-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Canine kobuvirus US-PC0082, complete genome. XX KW . XX OS Canine kobuvirus US-PC0082 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; OC Picornaviridae; Kobuvirus; unclassified Kobuvirus. XX RN [1] RP 1-8289 RX DOI; 10.1128/JVI.05317-11. RX PUBMED; 21880761. RA Kapoor A., Simmonds P., Dubovi E.J., Qaisar N., Henriquez J.A., Medina J., RA Shields S., Lipkin W.I.; RT "Characterization of a canine homolog of human Aichivirus"; RL J. Virol. 85(21):11520-11525(2011). XX RN [2] RP 1-8289 RA Kapoor A.; RT ; RL Submitted (06-JUN-2011) to the INSDC. RL CII, Columbia University, 722 West 168 Street, New York, NY 10032, USA XX FH Key Location/Qualifiers FH FT source 1..8289 FT /organism="Canine kobuvirus US-PC0082" FT /host="Canis lupus familiaris" FT /strain="US-PC0082" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="feces" FT /collection_date="2010" FT /db_xref="taxon:1082189" FT 5'UTR 1..712 FT /note="contains type II IRES elements" FT CDS 713..8047 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G3K1W7" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:G3K1W7" FT /protein_id="AEO19724.1" FT /translation="MAGRMESRSVRSTVNSFYRLTYITATDYQDFLYLQSFPQMSYPLP FT KPSYFPCPYCHCDEEHGFLSPESLCGEGFEPCHRCTNPPPRRKYNIVPPEDWLLDSNVQ FT DWFEPPTYLSDFQQRVFDKIALLSLPGPFQAKTPEELAILGALKQLLKFPDLPPQRMPL FT AVNQIKPQGNSVTNIYGNGNNVTTDVGANGWTPTVSVGVGDAPVSASADQLPGRPGGAS FT SDKAHSSPSSKTTIETGNRVGSRFSKWWEPAAARALERATDAACDGIEGAGKLAGKAIS FT RKLAGPTPASSTATPQPGLAALNPSATQAGNAAILTGSTAPSFLAYPTASSVPLPNPDE FT PSMPGPSGDRTWLLDTVTWEQSQQAGWNLAGNNGMLWGALDNPTFPISSSNNWGIEGSG FT SQATYPTAYPLPFSFVRAYPDSPWAAMYNTHSMWNCGWRVQVTVNGSQFHAGALILYLI FT PEAATKAIESARRNAGFVYPYVILNLYESNTATLEVPYISPTPNTSSGLHAPWTFYLQV FT LSPLNPPTGVPTSLSCSIYVTPIDSTFHGLRYVAPQHWKTRIVPGAGAFGSAVAGQELP FT LCGVRAFYPPNSYIPARVHDWLEFAHRPGLMATLPWTMAEEAGDRLAILPVSPSAIAGT FT GAPISYVLSLFSQWRGELAAHLLFTGSAQHYGRLVVCYTPAAPNPPQTMQDAMRGTYTV FT WDVNAASTLEFTIPFISQSYWKTVDIFNPDALLSTTGYLSVWVLNPLTGPHSAPASALI FT QGFLSAGESFNVRFMQNPALTSQANSEELSAPQDTANIENGASDNSPQPRTTFEYTENS FT LPPDSNLENFFSFYRLLPLGSNTNPSIPLPNGTAAQLPLDPLHWQQSADVAGLTAMLSC FT FTYIAADLRFTLRISNPNGLPTSVLIAYAPPGATIPQNPDRQMLSNFFMAETPISESNT FT TLISFSIPYTSPLSAIPTSYYGWEDWSGTNFGVLQAGSWGTLLFLPTYPVEDVQPSPMS FT ITAWIAFGISRGVGCPVPPPLPPLPTPATAPEKSVAVVKQGAHISLGDVDPDDRVYIVR FT ADRPTYVHWALRKVARDGSTKQISLSRDKTTAVVAYEPLEGELYQEVFPSAWTIAELQL FT GKPWEYSATHNCTHFVQGATNVELPNTGFSLALGVGALALVAASAAGAVQALKGIKRQG FT LLTLTADADTNRTLTRISESVTQATQAVTNFDLQGPANSVTLAASDIREAATRVASSLD FT GFTDVLHDLKSSLFSRVSDAVEAGVVSFLTWLAKIFGYLLVLFGSPTPMSISGLLVIIC FT ADLAPHARDFFAATGNVLSSLYYWIATKLGFSVTPEECEQATLEPQGLKDFNDGALAMR FT NVEWIGETAWKWAQRILTWIRGKAQTDPQAKLADAHDEIMMHYSDSILALGTEKPPVEH FT ITTAISRCRELVTIAQDAKSGPHSAFLNQALKNYTLALSQHRKRQVGPRPEPVVVYLYG FT PPGTGKSLLASLLAQTLAQRLSGNPDDVYSPTSASCEYFDGYNGQVVHFIDDIGQDPEG FT RDWANFPNLVSSAPYILPMASLEEKGTHYTSRVIVVTSNFHEPNERAARSMGALRRRVH FT LRINVTSNGVAFDPVNALNPIPNTTSKYFTAQTPLTLFQANVVRLDRDSIWTPSFSNLD FT ELIDAIMARMDRSTGVSNSLASLIKRQGRTINAEPREIPEAYADELVEALAHHKPVSCS FT LPLSQAIANNTPLETITNTLWKYRKPIFVATTFLAVVGFLTSIIPLARSIWQQREDSKS FT ETQAAYSGLPHQKAKPKSQKPIPTRHIQRQGLSPALPGISQNVVHVESGNGTTKAVMSG FT FYIFSRYLLVPTHLREPDHTTLLVGTDAYDWATLQTLELGELTLVHTPTSRQYKDMRRF FT IGSFPYPTGVLVSQYKTAPLYVRYSDNRVLDMDFPGAIVCKQAYGYRAATFEGLCGSPL FT VTDDPSGVKILGLHVAGVVGASGFSAPLHTILPQITQFATTHQSLIVPTGEVKPGVNIN FT RMSRLHPSPAYGAFPIKKEPAPLKRNDRRLNDGVNLDTQLFLKHGKGDQTEPWPGLEAA FT ADLYFSTFPTSLPVLSQEQAIMGTPNMEGLDMGQAAGFPWNTQGRSRRSLFDEPEPGVF FT VPKPELQVEIDRTLEDPDYVYSTFLKDELRPTAKVKDGLTRIVEAAPIHAIVAGRMLLG FT GLIDYMQGRPGEHGCAVGCNPDVHWTEFFYKFADFSQVYDLDYKCFDATLPSAAFSLVA FT DRLERLTGDPRVSKYIHSIRHSHHIYGNQMYDMVGGNPSGCVATSILNTIINNICVLSA FT LIQHADFSPSKFQILAYGDDVIYATEPPIHPSFIRDFYQKYTPLVVTPANKGSDFPPTS FT TIYEVTFLKRWFVPDDIRPFFIHPVMDPDTYEQSVMWLRDGDFQDVVTSLCHLAFHSGP FT KTYERWCMKVREQCLKSGFAPNFLPYSYLQLRWLNLLAA" FT 3'UTR 8048..8289 XX SQ Sequence 8289 BP; 1641 A; 3087 C; 1740 G; 1821 T; 0 other; tcacgcactt ttccggtggt ccggacccag accaccgtca ctccattcag cttcttcgga 60 acctgttcgg aggaattaaa tgggcaccca ctcacccttc ccctcttctc gtaactaagt 120 gtgtgcccaa tctcttgact cctactggct ccaccgaccg gtagtgtcca aaatgctagg 180 tggacttcct cccttccctt ctgggcatct tgcccagctt cctcccccca gcctgacgtg 240 tcacaggctg tgcaaagacc ccgcgaaagc tgccaaaagt ggcaattgtg ggtcccccct 300 ttgtcaaggc gtcgagtctt tctcccttaa ggctagtccc atcagtgaat tctgatgggc 360 aactagtgac gccactgcat gcctccgacc tcggccgcgg agtgctgccc cccaagtcgt 420 gcccctgacc acaagttgtg ctgtctggca aacattgtct gtgagaatgt tccgctgtgg 480 ctgccaagcc tggtaacagg ctgccccagt gtgcgtagtt ctcatccaga cttcggtctg 540 gcaacttgtt gttaagacac ggcgtaaggg gcgtgtgcca acgcccagga acgagtgtcc 600 actctaatac cccgaggaat gctacgcagg tacccctggt ccaccaggga tctgagcgta 660 ggctaactgt ctaagggtat tttcatttcc cactctctct ttctcgttca taatggcagg 720 cagaatggaa tctcgttctg tgcgctccac tgtgaactct ttttaccgcc tcacctacat 780 cactgctact gactaccaag acttcctcta ccttcagtcc ttccctcaaa tgtcctaccc 840 cctccccaaa ccatcttact tcccgtgtcc ttattgccac tgcgatgagg aacacggctt 900 cctgtccccc gagtcacttt gtggcgaagg tttcgaacct tgccacaggt gtaccaaccc 960 cccaccccgg cgcaagtaca acattgtgcc ccctgaagac tggctcctgg actccaacgt 1020 ccaggactgg tttgaacccc ctacctacct ctctgacttc cagcagaggg tcttcgacaa 1080 gatcgctctg ctgtccctcc caggcccctt ccaagcaaaa actcctgaag aattggccat 1140 tcttggagcc ctcaaacagc tcctcaaatt ccctgacctc cccccccaac ggatgcccct 1200 tgctgtcaac caaatcaagc cccaaggaaa ctctgtcacc aacatctacg gcaatggcaa 1260 caacgtcacc actgacgttg gtgctaatgg ctggaccccc actgtctctg tcggcgttgg 1320 agatgctccc gtctccgcgt ctgctgacca gctgcctgga cgcccaggcg gcgcttcctc 1380 tgacaaagcc cactcctccc cctcttccaa aaccaccatt gaaactggca accgtgttgg 1440 ctcccgcttc tccaagtggt gggaacccgc tgctgcccgc gctctggagc gcgccaccga 1500 tgccgcttgc gacggcattg aaggagccgg gaaactcgcc ggaaaggcga tttcccgtaa 1560 gctcgcaggc ccaacccctg cttcctcaac tgctaccccc caacctggcc tagctgctct 1620 caatccatct gcaactcagg ccgggaacgc cgccatcctt acaggatcga cagcgccttc 1680 cttcctcgcc taccccactg cctcctctgt cccccttccc aacccggatg aaccatccat 1740 gccgggacct tccggtgacc gcacctggct tcttgacacg gtcacctggg agcaaagcca 1800 acaggccggc tggaacctag ccggcaacaa cggcatgctc tggggagccc ttgacaaccc 1860 tacattcccc atttcctcat ccaacaactg gggaatcgaa gggtcgggct cccaagccac 1920 ctaccccact gcttaccctc tccccttctc cttcgtgcgt gcgtacccag actccccctg 1980 ggctgccatg tacaacaccc actccatgtg gaactgtggt tggcgcgtgc aggtcaccgt 2040 caacggctca caattccatg ctggtgccct catcctctac ctcatccctg aagccgcgac 2100 caaggcgatc gagtccgctc gccgcaacgc tggcttcgtc tacccctatg tcatcctcaa 2160 cctctatgag agcaacactg ctactctaga ggtcccctac atctccccca cccccaacac 2220 ctcctctggt ctccatgctc cttggacctt ctacctccaa gttctctcac cactcaaccc 2280 ccccactggt gtccccacct ctctctcctg ctccatctat gtcactccca ttgattccac 2340 cttccacggc ctccgctacg tggcgccgca gcactggaag acccggatcg ttccgggtgc 2400 cggtgccttc ggttccgccg tggctggcca agagctccca ctctgcggag ttcgtgcctt 2460 ctaccctccc aacagctaca tccctgccag agtccacgac tggcttgagt tcgctcaccg 2520 acctggactc atggccaccc tcccttggac catggctgag gaggctggcg acaggctcgc 2580 catcctccca gtctccccta gcgccattgc tggcactggc gctcccatct cctatgtcct 2640 ctccctcttc tcccagtggc gcggtgagct cgccgcccac ctcctcttca ccgggtcagc 2700 tcagcactac ggccgccttg tcgtgtgcta cacccccgct gcccccaacc ctccccaaac 2760 catgcaggac gccatgcgcg gtacttacac cgtgtgggac gtcaatgcag cctccaccct 2820 cgaattcacc attcccttca tctcccagtc ctactggaag acagtggaca tcttcaaccc 2880 tgatgccctt ctgtcaacca ctggctacct ctcggtgtgg gttctgaacc ccctcacagg 2940 accccactct gcccccgcct ctgctctcat ccaaggcttc ctctctgcgg gcgaatcctt 3000 caacgtccgc ttcatgcaaa accccgccct cacctctcag gcgaactcag aagaactcag 3060 tgctccgcag gacactgcga acattgagaa tggtgcgtct gacaactcac cacagccacg 3120 caccaccttc gagtacactg aaaactccct cccccctgac tccaacctcg agaacttctt 3180 ctccttctat cgcctcctcc cccttggttc caacaccaac ccatccatcc ctcttcccaa 3240 cggcacggct gcccagctgc ctctggaccc actccactgg cagcaatcag ccgacgtcgc 3300 tggtctcacc gcgatgctct cctgcttcac ctacatcgct gctgacctcc gcttcaccct 3360 ccgcatctcc aaccccaatg gccttcccac ctctgtcctg attgcttacg cccctcccgg 3420 tgccacaatc ccacagaacc ccgatcgcca gatgctctcc aacttcttca tggctgagac 3480 tcccatctcg gagtccaaca ccactctcat ctctttctcc attccctaca cctctcccct 3540 ctcagccatt cccacttcct attacggctg ggaggattgg tctggcacca acttcggtgt 3600 cctccaggct ggctcctggg ggacccttct cttcctcccc acctaccccg tggaggacgt 3660 ccaaccgtcc cccatgtcca tcaccgcttg gattgccttt ggcatttcaa ggggggtggg 3720 gtgccccgtg cccccccccc tccctcctct cccaaccccc gccaccgccc cagagaaatc 3780 tgtggctgtc gtcaaacagg gagctcacat ctccctgggt gatgtcgacc cagatgaccg 3840 tgtctacatc gttcgtgcag atagacccac ctatgtgcac tgggcgctcc gaaaggtcgc 3900 ccgcgatgga agcacaaaac aaatctccct ctcccgtgac aagaccaccg cggttgtcgc 3960 ctacgagcca ctcgaaggtg aactctacca agaggtcttc ccctccgcct ggaccattgc 4020 cgaactccaa ctcggcaaac cgtgggagta cagtgcaaca cacaactgta cccactttgt 4080 ccaaggtgcc accaacgtgg aactccccaa caccggcttc tcattggctc tcggagtcgg 4140 tgcccttgcc cttgtcgcag cctcggctgc tggtgccgtg caagcactca aaggcatcaa 4200 gcgccaaggt ctcctcaccc tgaccgctga cgctgacacc aaccgcaccc ttacccgtat 4260 ctcagaatct gtcacccaag ccacccaagc tgtcaccaac tttgacctgc aaggccccgc 4320 aaattctgtc accctcgccg cttctgacat tcgtgaagcg gccaccaggg tcgcctcgtc 4380 cctggatggt ttcacggatg ttctccacga tctcaaatct tctctcttct cccgtgtctc 4440 tgacgccgtt gaggccggag ttgtgtcctt cctcacttgg ctggccaaga tctttggata 4500 cctcctcgtc ctcttcgggt cccctacccc catgtccatc tctggacttc tcgtcatcat 4560 ctgtgctgac cttgcccccc atgcccgcga cttcttcgcc gctaccggca atgtcctttc 4620 ttccctctac tactggatcg ccaccaaact tggcttttca gtaacccctg aagaatgtga 4680 acaggcaacc cttgagccgc aaggtctcaa ggacttcaat gacggtgcac tcgccatgcg 4740 aaatgtcgag tggatcggag aaactgcctg gaaatgggcc cagcggatcc tcacctggat 4800 tcgcggaaaa gcccaaactg atccccaagc caaacttgct gatgcacatg atgaaatcat 4860 gatgcattac tcggattcca tattggccct tggaaccgag aaacccccgg tggagcacat 4920 caccaccgca atttcacgct gtcgtgaact cgtcacgata gctcaggatg caaaatctgg 4980 tccccactct gcattcctga accaagccct caaaaactac acccttgccc tctcccaaca 5040 ccgcaagcgc caggtcgggc cccgtcccga acccgttgtg gtctacctat acggaccacc 5100 gggcactggc aaatccctcc tcgcttccct ccttgctcaa acccttgccc agcgtctgtc 5160 cggtaacccg gatgacgtct actctcccac ttcagcctct tgcgaatact tcgacggtta 5220 caacggtcaa gtcgtccact tcatcgacga catcggccaa gaccccgaag gccgcgactg 5280 ggctaacttc cccaacctcg tctcctctgc cccatacatc ctccccatgg cctccctgga 5340 ggagaaaggc actcactaca cttcccgagt gattgtcgtc acctccaact tccatgaacc 5400 caacgaacgc gctgcgcgat cgatgggcgc cctcaggcgt cgcgtccacc tgcgcatcaa 5460 cgtcacttcc aacggcgttg cgttcgaccc cgtcaatgcc ctcaacccca tccccaacac 5520 cacttccaaa tacttcactg cccaaacccc tctcactctc ttccaagcga acgtggtccg 5580 cctagaccgc gattccatct ggaccccctc cttttccaac ctggacgagc tcatcgatgc 5640 catcatggct cgcatggatc gctcgaccgg ggtctccaac tctctcgctt ctctcatcaa 5700 gcgtcaggga cgcaccatca acgcggaacc ccgcgaaatc cctgaagctt acgctgatga 5760 acttgtggag gccctcgccc accacaagcc tgtctcttgc tctctccccc tctcccaagc 5820 tatcgctaac aacacccccc tggaaaccat aaccaacacc ttgtggaagt acaggaaacc 5880 catcttcgtt gctaccacct tcctcgcggt cgtgggattc ctcacctcca tcatcccact 5940 ggcccgctca atttggcaac agcgtgagga ctccaagtcc gaaacgcaag cggcatactc 6000 aggtctgccg caccaaaagg caaaacccaa atcccaaaaa cccatcccca cccgtcacat 6060 ccaacgccaa ggtctgtccc ctgccctccc cggaatctcc caaaacgttg tccacgtgga 6120 gtctggaaac ggcaccacca aggccgtcat gtccggattc tacatcttct cccgctacct 6180 ccttgtcccc acccacctcc gtgagcccga ccacaccacc ttgctcgtgg gcaccgacgc 6240 ctacgactgg gccacgctcc aaactctgga gcttggtgag ctcacccttg tccacacccc 6300 cacttcccgc cagtacaagg acatgcgccg attcatcggc tcatttcctt accccactgg 6360 tgttcttgtg tcccaataca agactgcccc cctctacgtc cgctactccg acaaccgcgt 6420 gctggatatg gacttccctg gagccatcgt ctgcaaacag gcgtacggat accgtgctgc 6480 gaccttcgaa ggtctgtgcg gatccccgct tgtcacagat gatccctccg gggtcaagat 6540 ccttggcctc cacgtggctg gagtggttgg cgcgagtggg ttctcagccc ccctccacac 6600 catcctcccc caaatcaccc aatttgccac cacccaccaa tccctcattg tccccactgg 6660 cgaggtcaaa cccggtgtca acatcaaccg gatgtcccgc ctccacccct cccccgccta 6720 tggtgccttc cccatcaaga aggagccagc ccccctcaag aggaatgacc gccgtctcaa 6780 cgatggcgtg aacctcgata cccaactctt cctcaaacac ggcaaaggtg atcagaccga 6840 gccttggccc ggtctggaag ccgctgctga cctctacttc tctaccttcc ccacctccct 6900 ccccgtcctt tcccaggaac aggcgatcat gggtacgccc aacatggagg gactcgacat 6960 gggccaagcc gcgggtttcc cctggaacac ccaaggccgc tcacgccgat ccctctttga 7020 tgaacctgaa cctggggtct ttgtccccaa acccgaactc caagtcgaaa tcgatcgcac 7080 acttgaagat ccggattatg tctactccac cttcctgaaa gacgagctcc gccccaccgc 7140 caaggtgaaa gacgggctca ccaggatcgt tgaggctgct cccatacacg caatcgtcgc 7200 cggccgaatg ctcctcggtg gtcttattga ctacatgcag gggcgtcccg gtgaacacgg 7260 ttgcgcggtt ggttgcaacc ccgacgtgca ctggactgag ttcttctaca aatttgcgga 7320 cttctctcag gtgtatgatc tggactacaa gtgtttcgat gcgacccttc cctcagctgc 7380 cttctccctc gtggctgacc gactggagcg cctaacaggc gacccccgtg tgtcgaagta 7440 catccactcc atccgccatt cccaccacat ctatggcaac cagatgtacg acatggtcgg 7500 gggaaacccc tccggttgtg tagccacctc catcctcaac accattatca acaacatctg 7560 tgtgctatcg gccctaatcc agcacgcaga tttctcccct tccaaatttc agatcctcgc 7620 gtacggtgac gatgtcatct acgcaacaga accccccatc cacccctcct tcatcagaga 7680 cttctaccag aagtacaccc cgttggttgt taccccagct aacaagggct ctgatttccc 7740 ccccacgtcc acaatctatg aagtcacctt cctcaagcgc tggttcgttc cggacgacat 7800 ccgaccgttc ttcatccatc cggtgatgga cccggacacg tacgaacaat cagtgatgtg 7860 gttgcgtgat ggagatttcc aggacgttgt cacctccctc tgtcatttgg ccttccacag 7920 tggacccaag acatacgagc gctggtgcat gaaagtgcgc gagcagtgtc tcaagtctgg 7980 gttcgctcca aatttcctac cctactccta cctccaactc cgctggctca acctgctggc 8040 tgcttagata gttagggaac tcacctgtgg tgcaataccc acagggccta gttagttaga 8100 accccttcac tcctccatgg tgatataaag accacccaca aacttttcgg gtgagcccct 8160 aagccatggt tgtactgtgc tatctttcta agacgtcctc tctttggacg cactttcccc 8220 ctggcgccgc gcctccctcg ggagctgcac ccgcgggcca gggttgtctt tgaacttttc 8280 taactgttc 8289 //