ID JF834523; SV 1; circular; genomic DNA; STD; VRL; 7197 BP. XX AC JF834523; XX DT 14-AUG-2011 (Rel. 109, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 3) XX DE Bovine papillomavirus type 12 isolate PR000001, complete genome. XX KW . XX OS Bovine papillomavirus type 12 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Xipapillomavirus. XX RN [1] RP 1-7197 RX DOI; 10.1007/s00705-011-1140-7. RX PUBMED; 22033594. RA Zhu W., Dong J., Shimizu E., Hatama S., Kadota K., Goto Y., Haga T.; RT "Characterization of novel bovine papillomavirus type 12 (BPV-12) causing RT epithelial papilloma"; RL Arch. Virol. 157(1):85-91(2012). XX RN [2] RP 1-7197 RA Zhu W., Dong J., Haga T.; RT ; RL Submitted (24-APR-2011) to the INSDC. RL Department of Veterinary Microbiology, University of Miyazaki, 1-1, Gakuen RL Kibanadai-nishi, Miyazaki 889-2192, Japan XX FH Key Location/Qualifiers FH FT source 1..7197 FT /organism="Bovine papillomavirus type 12" FT /host="Bos taurus" FT /isolate="PR000001" FT /mol_type="genomic DNA" FT /country="Japan:Miyazaki" FT /collection_date="15-Feb-2011" FT /db_xref="taxon:1070324" FT gene 217..342 FT /gene="E8" FT CDS 217..342 FT /codon_start=1 FT /gene="E8" FT /product="E8 protein" FT /db_xref="UniProtKB/TrEMBL:G1CR68" FT /protein_id="AEL99907.1" FT /translation="MFPWVYVLVLLWCALHLLATILTVLIFALLVQRIYTLNGEI" FT gene 554..826 FT /gene="E7" FT CDS 554..826 FT /codon_start=1 FT /gene="E7" FT /product="E7 protein" FT /db_xref="GOA:G1CR69" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:G1CR69" FT /protein_id="AEL99906.1" FT /translation="MRGSQPAISDISEELQELVCPVNLECDEELAPENDDPYAVAVACH FT KCGNQVAFCVYAPREGIRQFQQLLLDCLDFCCPACSLNLLQRNGL" FT gene 816..2606 FT /gene="E1" FT CDS 816..2606 FT /codon_start=1 FT /gene="E1" FT /product="E1 protein" FT /db_xref="GOA:G1CR70" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:G1CR70" FT /protein_id="AEL99903.1" FT /translation="MASKGIDFILNEAECSDDENEDPELCESGCSDVSDLVDNSVCVQG FT NSLELFAQLQAADYDQQLNAVKRKLTEKPRKPLQQRTLQGNVEARCTHKRAHLDDSGYA FT EKTFEEVVQVENQTLLESEGYGSLGTQETGLNKENVNVVRLLQRGNAKVTKLAKFKECF FT LVSFSSLTRPFQSNRTCCRNWVAVVFGAHDDLLDASKKLFQTYCDFIFFSERSCVLGLV FT GLYLFEFKASKNRDTVQKLFKEFLHSEPEQLLLEPPKIKSVPAAVFWWKATLWSNAFSW FT GPLPDWIAAQTSVTHQQNEEEPFKLSVMVQWAYDNEILDEADIAYKYAKLAFEDSNAAA FT FLKCNQQVKYVRECAQMVRYYKIAEMKEMSMGEWIKKSLNNIADDGNWKHIALFLKYQC FT VSFISFLTKFKDFLHGIPKKNCLVIYGPPNTGKSMFAMSLMTAMRGKVLSFVNSKSHFW FT LQPLQTAKMAVLDDATKPTWDYIDIYLRNGLDGNQVCLDVKHKAPIQLTFPPIVITTNV FT DVLNEGSLSYLHSRIQVLEFPNTIPLTDNGEPAFLINDRSWKSFFQRLWDQLELTNPDE FT EDGPSRSPFRCTAGRADANL" FT gene 2548..3801 FT /gene="E2" FT CDS 2548..3801 FT /codon_start=1 FT /gene="E2" FT /product="E2 protein" FT /db_xref="GOA:G1CR71" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:G1CR71" FT /protein_id="AEL99904.1" FT /translation="MDPLAARFDALQEELMQIYERGESTLDAQIRHWELIRHEQATYFV FT ARRQGITRLGLYPVPSASVSEARAKQAIEMHLLLQSLKKSAYADERWTLVETSFEHFNS FT PPARTLKKGPTQVTVIYDNNPENAMTYTLWKYVYVLDPNDVWHKLPSDVDYYGIYYTDL FT DQQRVYYVSFGTDAEQYTGSGQWTVHFANKTFSAPVTSSAGGHSGLEEEQAQGPRQLAA FT RRQATYRGRRSRRSRTPQTPPRSRSRSESRSRSASSSSDTDHRSRSRQRNGGRGFRRGD FT STGEHPESEEESGRHSPGPPGSLGRRTAETSGASGRRRTPRVVQLLKDAADPPVLLLRG FT PANTLKGFRRKARLKYSEYYSCMSTAFSWVSGTCTERLGTCQRMLVAFNSDSQRTRFLC FT NVHIPRSVTFVKGSFDAL" FT gene 3056..3529 FT /gene="E4" FT CDS 3056..3529 FT /codon_start=1 FT /gene="E4" FT /product="E4 protein" FT /db_xref="UniProtKB/TrEMBL:G1CR72" FT /protein_id="AEL99905.1" FT /translation="MYPLALMQNSILGLDSGLCILQTKLFLLLLPAPPEGTPGSKKNRP FT KDHDNSQPDDKQPTEVDGPGGPGHRRRRLGPGLGPSRGPGLRVPRLTLTTDPDHDSETE FT DADSDEETAQENTRNRKKNLEDTLQDLLDHWDEELQKLRERLADDVHRELFNY" FT gene 3816..5393 FT /gene="L2" FT CDS 3816..5393 FT /codon_start=1 FT /gene="L2" FT /product="L2 protein" FT /db_xref="GOA:G1CR73" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:G1CR73" FT /protein_id="AEL99909.1" FT /translation="MVKAVRRKRASEETLYRGCLAGQDCPPDIKNKFEQNTIADRILKW FT VSSFLYFGTLGISSGKGTGGAGGYTRLGPGGGGGGGRPGVTTSRGSNVARPNVIVDSLV FT PAGVPIDTVAPDQAIVPLLEDTLSTDIAGSGEIEVIAEVHPPPTNGSDGIVIGLDPEPP FT VLEITPEEQPTSRVRTTTSRHHNLAFDAYVATTQLPGESSASDNVYIIHGFPGEVIGPP FT GDTVFEEIPLEEFNTSTTVDSDVRTSTPDSSFRRVLNTFQRRLYNRRLVQQVKLTDRTF FT LTRPSQLVRWEFENPVYEADISLLFDQDVAEVQAAPNPDFQDIVYLSRPTFEEREGYLR FT VSRFGRRGTIQTRSGATIGGHVHYFTDISPVRDLQDIEMQTFAETSGDSIIMQPLNEST FT FINDAADIGVIYDPSEPLLDDQFSESALDDRYMEDFSNIRLQVTTDQDDEPTILTVQEG FT IPPGSVKMFTNDTESVVHYVPNETPLSPFVPLNPATTPAIIIDFTDSTATFYLHPSLMR FT RRRKRHIF" FT gene 5405..6925 FT /gene="L1" FT CDS 5405..6925 FT /codon_start=1 FT /gene="L1" FT /product="L1 protein" FT /db_xref="GOA:G1CR77" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:G1CR77" FT /protein_id="AEL99908.1" FT /translation="MSYWLPSTGRLFLPPPTPVSKILDTDDFVKRTDIYYHTSTERLLT FT VGHPYFEIKGADGTVEVPKVSGSQFRVFRLIFPDPNKFSFPNPNVYNPENQRLVWAIRG FT LEFCRGQPLGIGVTGHPLFNKLDAENRTKYPNVEDDDRQNIGVDPKQVQMFIVGCTPCE FT GEHWDKAEPCKPQAKGSCPPIQLVNSTILDGEMCDIGFGNMNFKNLQATRSGVPLDIVN FT QTVKYPDFLKMGSDPYGNQMFFYAKRESMYVRHLWSRAGTNGDGIPPEDGPGDFMIPNT FT AKVIAPPVYYGTPSGSLVSSDVQIYNRPFWIQRAQGTNNGVCWNNQLFVTAVDSTRGTN FT FTISVQATGDEADERTYNYKAKDFKHYLRHVEEWELSFIMQLCIVDLTPETLSHLNTMD FT SKILDNWNLGFVQPAGNIEDQYRNINSLATRCPGKNDAPKDTEDPYDKMNFWKVDLSDR FT FSLNLEQFSLGRKFLYQTGNRQGGTKRPAPKTVSFESKRSVKRKKKSA" FT gene 6276..6509 FT /gene="L3" FT CDS 6276..6509 FT /codon_start=1 FT /gene="L3" FT /product="L3 protein" FT /db_xref="UniProtKB/TrEMBL:G1CR78" FT /protein_id="AEL99910.1" FT /translation="MEPPVALWCPAMCKFITDPSGFKELKEQIMGSAGIISYLLLQLIV FT PEVLILPYQCRLQEMRQTREHITTKQKILSTI" XX SQ Sequence 7197 BP; 2189 A; 1398 C; 1596 G; 2014 T; 0 other; aagcttgcac ctggtcatta aagcacttgg cacaccgcca agacaagctc caacgagcaa 60 aaccgttttc ggtaccgctg cacttcaaaa agtaagtata gatgaaaaca accatctggc 120 ataatgaata cataatgcgc gaaaacggtc caaaacctct ttcggctcat ataaaagctc 180 agttgcaggg gctgctgaca agctaggtgc ttcactatgt ttccttgggt atatgttttg 240 gtattgcttt ggtgtgcttt gcatttactt gctaccattt tgactgtttt aatatttgca 300 ttgttagtac aaagaatcta tactttaaat ggtgagatat aattgttgct gtgtctgaat 360 ttgcattgta ctgctgtttg tgatctaatt ttggtcattt tgctttagac tgctgaatga 420 aggtgttgag tgacttgcaa ttagatttta tctgcttgct gtttattagt ggggttagtc 480 ttggggattc tggcactata tttgctgcta atagggattt tggggcttat aggcgtctgt 540 cacgactgaa aaaatgaggg gtagccagcc tgcaattagt gatattagtg aagagttgca 600 agagttagtc tgtcctgtta atctggaatg tgacgaagaa ctggcgccag aaaacgatga 660 cccatacgca gtggccgttg catgtcataa atgtggtaac caagtggcat tttgtgtcta 720 tgctccacga gaagggattc gtcaattcca gcagctgctc ctagactgct tggacttttg 780 ttgtcctgcc tgttctttga atcttctgca gagaaatggc ctctaaaggt attgacttta 840 tattaaatga agctgagtgt agtgatgatg aaaatgaaga ccctgaattg tgtgaatctg 900 gttgctctga tgtgtctgat ttggttgata actctgtatg tgtacagggg aattccttgg 960 aattgtttgc acaattgcaa gctgctgatt atgaccaaca gctaaatgct gtaaaacgaa 1020 agttaactga aaaacctcga aagccgttgc aacaacgaac cctgcagggc aatgtagaag 1080 ctcgttgtac tcacaaaaga gctcacctag acgacagtgg gtatgctgaa aagacttttg 1140 aagaggtggt acaggtagag aatcagactt tacttgaatc tgaagggtat ggaagtttag 1200 ggacgcagga aaccgggcta aacaaagaaa atgtaaatgt ggttagactg ttgcaaagag 1260 gaaatgccaa agtgactaag ctggctaagt ttaaagaatg ctttttggtt agcttttcgt 1320 cgcttacaag accttttcaa agcaacagaa cttgctgtag aaactgggtg gctgtagttt 1380 tcggggcaca tgacgattta ttagatgcct ctaaaaaatt gtttcaaacg tactgtgact 1440 ttatattttt ttcagagcgc agctgcgttt tgggtttagt gggactttat ctatttgaat 1500 ttaaagctag caaaaatcgt gacactgtgc aaaaactctt taaagagttt ttgcactcag 1560 agccagaaca gctgctgctt gaacccccta aaattaaaag tgttccagct gctgtgtttt 1620 ggtggaaagc gaccctttgg tcaaatgcat tttcttgggg gcctttacct gattggattg 1680 ctgcacaaac gtcagtaact catcagcaaa atgaggaaga gcctttcaaa ctttctgtga 1740 tggtgcaatg ggcatatgac aatgaaattt tagatgaagc agacatagct tacaaatatg 1800 ccaaattggc ttttgaggac agtaatgcag ctgcgttctt aaaatgtaat caacaagtaa 1860 aatatgttag agaatgtgct caaatggttc gttattataa aattgctgaa atgaaagaaa 1920 tgtctatggg tgaatggatt aaaaagtctt taaataacat tgcagatgat ggcaactgga 1980 aacacattgc ccttttttta aaatatcaat gtgtgtcttt tatatctttt ttaactaaat 2040 ttaaagactt tttgcatgga attccaaaaa aaaattgctt agttatatat gggcctccta 2100 atacaggaaa gtctatgttt gcaatgagct taatgacagc tatgagagga aaagtgctat 2160 cttttgttaa ttcaaaatct catttctggc ttcagccttt gcaaactgct aaaatggctg 2220 tcttagatga tgctacaaaa cctacttggg attatataga tatatatttg cgaaatgggt 2280 tggatggaaa tcaagtttgt ttggatgtta agcataaggc ccctattcaa ttaacattcc 2340 ctcctatcgt cattaccact aatgtagatg tgttaaatga gggcagttta tcctatttgc 2400 atagtaggat ccaggttcta gaatttccaa atacaatacc tttaactgac aatggggagc 2460 ctgcatttct aattaatgat cgcagttgga aatctttttt ccaaaggctt tgggatcagc 2520 tagaattgac caatccagac gaagaagatg gaccctctcg cagcccgttt cgatgcactg 2580 caggaagagc tgatgcaaat ttatgaaaga ggggaatcga ccctcgatgc acaaattagg 2640 cattgggaac tgattagaca tgaacaggcc acttatttcg ttgccaggag gcaaggaata 2700 actagactgg gactgtaccc agttccatca gcttctgttt ctgaagccag agctaagcaa 2760 gcaatagaaa tgcatctatt gctgcaaagc ctcaagaaat ctgcttatgc agacgaaaga 2820 tggactttag tagagacaag ttttgagcac tttaattcac cccctgccag gactttaaaa 2880 aaaggaccta ctcaagtaac tgttatttat gataataacc ctgaaaatgc aatgacttat 2940 acgttgtgga aatatgtgta tgtactcgac cctaatgatg tatggcataa actacctagt 3000 gatgtggatt attatggtat atattatact gacctagacc agcaacgagt ttactatgta 3060 tcctttggca ctgatgcaga acagtatact gggtctggac agtggactgt gcattttgca 3120 aacaaaactt tttctgctcc tgttaccagc tccgccggag ggcactccgg gctcgaagaa 3180 gaacaggccc aaggaccacg acaactcgca gccagacgac aagcaaccta cagaggtaga 3240 cggtccagga ggtcccggac accgcagacg ccgcctaggt ccaggtctag gtccgagtcg 3300 cggtccaggt ctgcgagttc ctcgtctgac actgaccaca gatccagatc acgacagcga 3360 aacggaggac gcggattcag acgaggagac agcacaggag aacacccgga atcggaagaa 3420 gaatctggaa gacactctcc aggacctcct ggatcattgg gacgaagaac tgcagaaact 3480 tcgggagcgt ctggccgacg acgtacaccg cgagttgttc aactattaaa agacgcagca 3540 gacccccccg tcctgctttt gcgtggccct gctaatacat taaaaggctt cagacgtaag 3600 gcccggctaa aatactctga gtattactcc tgcatgagca cagctttctc ttgggttagt 3660 ggtacctgca cagaaagatt aggaacctgc caaaggatgc tggttgcatt taacagtgac 3720 tctcaaagga ctcgctttct ttgtaatgtg catatccccc gcagtgtgac ttttgtaaaa 3780 gggtcttttg atgctttata agtctttgca ttaaaatggt taaagctgtg agacgcaaac 3840 gtgcctctga ggaaactttg tacagaggat gccttgctgg tcaggattgc ccccctgaca 3900 tcaaaaacaa gtttgagcaa aacacaatag cagatagaat tttaaaatgg gttagctcct 3960 ttttatactt tggaacttta ggaataagta gtggtaaagg gacaggtgga gcaggcggct 4020 acacacgttt aggtccgggt gggggagggg gtgggggacg cccaggggtc accaccagtc 4080 gtggcagtaa tgttgcaagg ccaaatgtta tagtagactc tttagtacct gcaggagttc 4140 caatagacac agtagcacct gatcaagcca ttgtgccttt attagaagac actctaagca 4200 cagatattgc agggtcaggt gaaattgaag ttatagctga agtgcatccc cctcctacaa 4260 atggcagtga tggaatagta ataggcttag acccagagcc cccagttctt gaaataacac 4320 cagaagagca gcctacatcc cgagtacgaa ccacaacctc cagacatcat aatttagcat 4380 tcgatgctta tgtagccaca acacaattac caggggaatc atctgctagc gacaacgtgt 4440 atattattca tgggtttcca ggtgaggtta ttggaccccc aggtgacaca gtgtttgaag 4500 aaattccttt agaagagttt aatacttcta caactgttga tagtgatgtt cgcacaagca 4560 cacctgacag ctcatttaga agggtactta acacattcca aagacgcctg tataacaggc 4620 ggcttgttca gcaagttaaa ctcactgata ggacattcct aaccaggcca tcacaattag 4680 tgcgttggga attcgaaaac cctgtctatg aagcagatat ttctctttta tttgatcagg 4740 atgttgcaga agtgcaggca gctccaaacc cagattttca agatatagtg taccttagta 4800 gacccacttt tgaggaaaga gagggctatt tacgtgttag cagatttgga agacgtggaa 4860 ctatccaaac tagaagtggg gcaactatag gaggtcatgt acattatttt acagatataa 4920 gtccagtcag ggatttacag gacatagaaa tgcaaacatt tgcagaaacc tctggagaca 4980 gcataattat gcagcctctt aatgagagta cattcataaa tgatgctgct gacattggag 5040 tcatatatga tccttctgaa ccattattag atgaccaatt ctccgaaagt gctttagatg 5100 acagatatat ggaggacttt tcaaatatca gactccaagt gacaacagac caggacgatg 5160 agcctactat tttaactgtg caagagggaa ttcccccagg ttctgttaaa atgtttacga 5220 atgacactga aagtgttgtg cattatgtgc caaatgaaac tccattgtca ccctttgttc 5280 cattaaatcc tgcaaccaca cctgccatta taatagattt cactgactct actgctacct 5340 tttacctaca tcccagccta atgagacgca gacgtaaaag acatatattt tgactctttt 5400 acagatgtca tattggcttc catcgacagg acgactgttt ctcccacctc caacacctgt 5460 ttccaaaata ttagacacgg atgactttgt taaacggacg gacatctact atcacactag 5520 tactgaacga ttactgactg ttggacatcc ttactttgaa attaaaggcg ctgacgggac 5580 tgtagaagta cctaaagttt ctggaagcca atttagagtt tttagactga tattccctga 5640 ccctaacaaa tttagttttc ctaatccaaa tgtttataat ccagagaatc agagactagt 5700 ctgggctatt agaggcttag aattttgcag aggtcaaccc ctaggaatag gggttacagg 5760 gcatcccttg tttaataaac tggatgcaga aaacagaaca aagtacccta atgtagaaga 5820 tgatgatagg caaaatattg gagttgatcc caagcaggtc cagatgttta tagtgggctg 5880 tactccatgt gagggagaac attgggataa agctgaacca tgcaaaccac aagcaaaagg 5940 cagctgtcct cctattcaat tggtgaattc tacaatacta gatggagaaa tgtgtgacat 6000 aggatttgga aatatgaatt tcaaaaatct gcaggccact agatcaggtg tgccccttga 6060 cattgttaat caaacagtca aataccctga ttttttgaaa atgggtagtg atccttatgg 6120 aaatcaaatg ttcttttatg ctaaacgaga atccatgtac gtgagacatt tatggtccag 6180 agcaggcaca aatggagatg gcataccacc agaagacgga ccaggggact ttatgattcc 6240 aaatacagct aaagtcatag cacctccagt ttattatgga acccccagtg gctctttggt 6300 gtccagcgat gtgcaaattt ataacagacc cttctggatt caaagagctc aaggaacaaa 6360 taatggggtc tgctggaata atcagctatt tgttactgca gttgatagta ccagaggtac 6420 taattttacc atatcagtgc aggctacagg agatgaggca gacgagagaa catataacta 6480 caaagcaaaa gattttaagc actatttaag gcatgtggag gaatgggaat tatcttttat 6540 aatgcagctg tgcattgttg acttaacccc agaaacacta tcacatttaa atactatgga 6600 ttctaaaatt ttagacaatt ggaatctagg ctttgtgcag ccagctggaa acattgaaga 6660 tcagtataga aacataaact ctttagctac cagatgccca ggtaaaaatg atgcccctaa 6720 agatactgag gacccgtatg acaaaatgaa tttttggaaa gtagatctca gtgataggtt 6780 ttctctgaat ttagagcagt tttctttagg aagaaagttt ttgtatcaga cgggcaatag 6840 gcaaggcggc actaaaaggc ccgcaccgaa aacggttagt ttcgaatcca aacggtcagt 6900 taaaaggaaa aaaaagagcg cgtaaagtag aaccgttttc ggtgcagctg tgcaaagttt 6960 gcgtgacaaa tttatgtgta actaacttcc taatcttgtt taaactcagc ctaattacat 7020 taataaaaca cgttgaaagt tttttggctt cagacttctt ttttgaagca ttttgttatt 7080 cagtatatct catctgcagc cagctcaatg ggaaaatatt tctccacctt aaaacagtgt 7140 ccctcccaag aatcttggca cccacgagtt gcagacacgc caagaaagtg tctataa 7197 //