ID JF800656; SV 1; circular; genomic DNA; STD; VRL; 7873 BP. XX AC JF800656; XX DT 10-OCT-2011 (Rel. 110, Created) DT 10-OCT-2011 (Rel. 110, Last updated, Version 1) XX DE Canine papillomavirus 9, complete genome. XX KW . XX OS Canine papillomavirus 9 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC unclassified Papillomaviridae. XX RN [1] RP 1-7873 RA Yuan H., Luff J., Zhou D., Wang J., Affolter V., Moore P., Schlegel R.; RT "Novel canine papillomaviruses cause pigmented viral plaques"; RL Unpublished. XX RN [2] RP 1-7873 RA Yuan H., Luff J., Zhou D., Wang J., Affolter V., Moore P., Schlegel R.; RT ; RL Submitted (08-APR-2011) to the INSDC. RL Pathology, Georgetown Medical Center, 3900 Reservoir Rd, NW, Washington, DC RL 20057, USA XX FH Key Location/Qualifiers FH FT source 1..7873 FT /organism="Canine papillomavirus 9" FT /host="canine" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="10-Jul-2010" FT /db_xref="taxon:1087108" FT CDS 263..718 FT /codon_start=1 FT /product="E6" FT /db_xref="GOA:G4XF62" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/TrEMBL:G4XF62" FT /protein_id="AEP82734.1" FT /translation="MDRPWSLAGFCVRSGISLCELQVPCVFCGSNLDFDDCVAFDFKVL FT QISWKNNRPHACCTACARNICRLEVGGYTQQVVTYRTFVRLVGAGFYFVPVRCTDCLGL FT VTTTQKLQALYRRQDFRKVRGRWRTRCTYCAESDNDWERRYFERHSS" FT CDS 678..980 FT /codon_start=1 FT /product="E7" FT /db_xref="GOA:G4XF63" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:G4XF63" FT /protein_id="AEP82735.1" FT /translation="MIGKDATLRDIVLEEQPTPLDNLWCDEELAPSDDEEEESPPNQNL FT KPFRIQTYCGTCGRGIRIVVLCTQDGIHSLESLLCRNTSLCCPTCAATYRFEHGG" FT CDS 970..2835 FT /codon_start=1 FT /product="E1" FT /db_xref="GOA:G4XF64" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:G4XF64" FT /protein_id="AEP82736.1" FT /translation="MEGDLETGTDPGEGPSSGGYILREAECSDMDTSEDDAEDDDMGDF FT IDENSQALLHQQRLREDNGQVQVLKRKYTSPKQKVDAYLSPRLRAITISPPKQQAKRRL FT FTQSVDSGLEASGENETSYTSENDNDQVDAVMLVGEEDEKLGRTPPPAGGFCVRGAQQA FT LLTQLMKTSNQRATQYALFKKAYGISITELTRAFKSNRTCNPDWVAVAFGVHHNTYGDI FT VQRLEKYCEYIQLQGNAGASGYTVLLLLRFIAHKNRDTLSKLLKNVLNVAGAQLLLDPP FT KVRSVAAALFWYRSGMSSAVQSYGTLPEWVTRQTLVQHHTGEEVKFTLATMVQWAYDND FT HTEESDIAYHYALLADGDANAAAWLGTNSQAKHVKDCSIMVKHYKRAMMATMTMSEWIT FT KRMSLIEGEGDWKHIGNFLRYQTVEVISFIGALRDLLKRIPKKTCICIVGPPDTGKSAF FT CLSLLEFFGGKVISFANSKSQFWLQPLADTRIALLDDATKITWDYVDAYLRNALDGNTI FT CLDLKHKAPMQIRCPPLLITSNVDIRTNDRWRYLYSRIYTVEFKYAFPFNEAGEPVYQL FT NKVNWKSFFKRLWTRLDLSDQEDEGEDGEPEKAFRCDTRRASDHL" FT CDS 2777..4240 FT /codon_start=1 FT /product="E2" FT /db_xref="GOA:G4XF65" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:G4XF65" FT /protein_id="AEP82737.1" FT /translation="MENLRKRLDVIQEELLTIYEEGSEVLADQVKHWNLMRKENVILHF FT AKKAGIIRLGLQPVPALRVSAQRAKDAIEMQLVLQTLLESPFAAERWNLQDTSRETWTA FT EPSNCFKKGPMLVEVYFDGDRDNSMHYTLWQYVYYTDMTDQWQKTKCHVSGEGLWFWEN FT GHQRFYVRFADEAKKYGTRGQWDVMCNHEPICSPESVTSTTPPQHPGAKTVGPAHGAER FT VAGGGGAPGTWRERKGASPKSLRLCETADSTDPAPHAPDSQQEEAQEQIHPTAVGQHGL FT GRSAGTGGVLPHPAAGESLADPGGGLVSQVPEQPPCSESLPGSVTSTTPEPRPLYAPAA FT SPGPGPGSETAASLPAAAAGFQALPDPTEEGPRQGTAPGSEGRFPVGSRYRRRPRPVLR FT EAGDCTASVVVLAGPCNTLKCFRYRAKQQYRGLFCNISTTWYWAGDGSERIGAARILVT FT FSNNAQRAGFLERVRLPTSVSLLESIHSV" FT CDS 3348..4001 FT /codon_start=1 FT /product="E4" FT /db_xref="UniProtKB/TrEMBL:G4XF66" FT /protein_id="AEP82738.1" FT /translation="MNLFAPPNLLPAQHRPNTLVQKLWDLLTGPNGWPEEVELRELGER FT GRGRRRSPCACARPPTPQTPPHTPPTRSRRRHRSRYTPPQSDSTDWDDLQALGACSLTP FT PLGSPLLTPEEVWFPRSQNSPPVLSPCPGASPLPRPSPGPCTPRPRLLDLDQDQRLPHP FT SPLPLPDSRPSLTQQRKALDKALRQVQKDAFQLEVDIGADLGRFFGKLGIAPRQ" FT CDS 4481..5998 FT /codon_start=1 FT /product="L2" FT /db_xref="GOA:G4XF67" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:G4XF67" FT /protein_id="AEP82739.1" FT /translation="MVRARRLPRASAEDLYKTCKHAGTCPDDVINKIEGKTTADKILQI FT GGAAVFFGGLGIGTGSGRGGATGYTPLGGRTGTGVTVGTGTRVVRPPVPVDAVGATDVL FT PVDALGPSIVPLQEVPPEIPLLEVTPDVPGVPEVPLRVPLDTSGSSVDSGPVTVTVHAV FT IEPVPSDPPVRTSVSWSQHSNPAFEVIPSSNNSLGETSASSNIFVTHENGGVEIGSSDP FT AVFREFITSTPRDTPVRVSGPRRGGYPRRFIEQVELSDLSAVVDPGPRVVFGYDNPAYD FT TTLEFEPPPYPAVRSAPDQRFRDVLRLSAPRYDLSESGHVRVGRHGIRGAVTTRSGVQL FT GSQAHFHHELSTLTMPEEVELTVLGEQSGTTVIVSGGSESSMEVVSLDTSSFTSIQMSP FT ADLEELLGGIEDVPNFENLRLEFPRGRNRVTLDLPTTNLAMPGPIDVGGGTVYVDYPPA FT DGGGPYGPFGPLPPVIIVDVASGAGTDYYLHPSLQARRRRRRRRHFM" FT CDS 6051..7556 FT /codon_start=1 FT /product="L1" FT /db_xref="GOA:G4XF68" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:G4XF68" FT /protein_id="AEP82740.1" FT /translation="MSVWVPNSQRLYLPPTPVSKVLSTDSYVTRTNVFCHAASDRLLTV FT GNPFFEILADDDVTVKIPKVSSNQYRVFRVTLPDPNQFAFSERPTHDPDKERLVWGLRG FT LDVGRGQPIGIGVTGHPLLSRFTDNENPSKYSGVEKQPKDSRQNVAFDTKQTQLLIVGC FT SPAIGEHWSPARACNGTKKGDCPPLELKNTVIQDGDMLEVGFGAMDFRSLSRNRSDAPL FT DVILSISKYPDYLKMSKEASGDSMFFFARREQEYIRHFFSREGKVGEPVPSSLYFPGDS FT GQQQEKIGTAVYYGTPSGSLTSSDSQIFNRPYWLQRSQGLNNGICWLNQLFVTVGDTTR FT GTNMTITVSTNDVPTKYDSDNFMTYLRHTEEFELSFIFQLCIVPLTPEVLSHLHTVNPL FT ILEHWNLGVQPPTATLLEDKYRFLDSLATRCPDKAPPKPSEDPFGGFTFWGVDLTERFS FT QDLDQFPLGRKFLAQSNISPTRKRIRSPSTSSSKKRTVKRKKK" XX SQ Sequence 7873 BP; 1975 A; 1920 C; 2098 G; 1880 T; 0 other; ctgcattgag ccagaccgtt cgcggtcgga ttttttgcag tgtcagcaca agttcacctg 60 cataaatagg gattaggtgc ttatgtaaac gggagcggtg ccacttaccg ccggcggtac 120 aggtaagaac ctatattctt tcttattgtt gctaacaaca tcaaccaccg tatacggtta 180 taggagacgc accgccaacg gttcactgaa acctgccaaa aaatctacta tttattgcca 240 cgaaaccgtt gcaaggcggg ctatggatcg tccatggagc cttgcaggtt tctgcgtgcg 300 ctcaggaatt tcattgtgtg aattacaagt accgtgcgtg ttctgtggga gtaacctgga 360 ctttgatgat tgtgtagcat ttgactttaa ggttttacaa atatcatgga aaaataaccg 420 tccgcacgcc tgctgcacgg cgtgtgcaag gaatatctgc aggttggagg tcggcggata 480 cacgcaacag gtggtcacat atagaacatt tgtgagactt gtgggagccg gattttattt 540 tgttcctgtg aggtgtacag actgcctggg gctagtgacc accacacaga aattacaagc 600 gctatacaga agacaagact ttagaaaggt cagagggcgg tggcgaaccc ggtgcaccta 660 ctgtgcagaa tctgataatg attgggaaag acgctacttt gagagacata gttcttgagg 720 agcagcccac accacttgac aacctctggt gtgatgagga gctagcgccg tccgatgatg 780 aggaggagga gtcgcctccc aatcaaaatc tgaagccatt cagaatacag acatactgtg 840 gcacctgcgg tcgtggaatc aggattgtgg tcctctgcac acaggacggc atacacagcc 900 tagaaagcct tctgtgccga aatacatcac tctgctgccc cacctgcgcc gcgacctaca 960 gatttgaaca tggagggtga cctagaaaca ggtacagacc caggagaagg accgagctcg 1020 ggggggtata ttttgaggga agcggagtgt agtgacatgg acactagtga ggacgatgct 1080 gaggacgatg atatgggtga ctttatagat gagaattccc aggcgctatt gcaccaacaa 1140 agattaaggg aggacaatgg gcaggtacag gtgttaaaaa gaaagtacac cagtccgaaa 1200 cagaaagtag atgcctacct aagccctagg cttagggcca ttactatatc cccaccgaag 1260 cagcaggcaa aacgcaggct gttcacacaa agtgtagaca gcggtctcga ggcgtccgga 1320 gaaaatgaaa ctagctatac ttctgaaaat gacaacgacc aggtagatgc cgtaatgctg 1380 gtgggggagg aggacgaaaa gctgggaagg accccccctc cggcgggtgg gttttgtgta 1440 agaggagcgc agcaggcatt gctgacacaa ttaatgaaaa cctcaaacca gagggcgacg 1500 cagtatgcac tgttcaaaaa ggcatatggc attagtatta cggagctgac acgggcattt 1560 aaaagcaacc ggacatgcaa tccggactgg gtggccgtag cattcggggt gcaccataac 1620 acctacgggg acatagtaca aagattagaa aaatactgcg aatatataca gctccagggt 1680 aatgcaggcg catcgggcta cacagtacta ctattactaa gattcatagc ccataaaaat 1740 agagataccc tgtcaaaatt actgaagaat gtattgaatg ttgcgggggc acaactgctg 1800 ctcgacccac ccaaagtcag gagtgttgca gcagccctat tctggtacag aagtgggatg 1860 tcatccgctg tccagtcata tggaaccctg ccggagtggg tgactcggca gacattagtg 1920 cagcaccaca caggggagga ggttaagttc accctagcaa caatggtgca gtgggcatac 1980 gataatgacc acacagagga aagcgatatt gcataccact atgcactcct agcagacggc 2040 gacgccaatg ccgcggcgtg gctaggcaca aactcacagg cgaagcatgt aaaagattgt 2100 tccataatgg tcaaacatta taaacgggca atgatggcta caatgaccat gtcagagtgg 2160 ataacaaaga gaatgtcact gatagaggga gagggggact ggaaacatat agggaatttt 2220 ctcagatacc agacagtgga ggtgatctca ttcataggtg cattgagaga ccttttaaag 2280 agaatcccga agaaaacatg tatatgcata gtaggccccc ccgacacggg gaagtcagca 2340 ttttgtctta gtttgttaga atttttcggg ggcaaggtca tttcatttgc aaactccaaa 2400 agccagtttt ggttgcagcc actggccgac accagaatag ccctgctaga tgacgctaca 2460 aaaataacat gggattacgt agatgcatat ctgagaaatg cactggacgg aaacacaatc 2520 tgtttagatc tgaaacacaa ggctcccatg cagataagat gtccgccatt actgataaca 2580 agcaacgtag atattagaac gaacgacaga tggcgctacc tatacagtag gatatacaca 2640 gtggaattta agtatgcctt cccctttaat gaggcgggcg agcctgtgta ccaattaaat 2700 aaagtaaact ggaaatcatt ttttaaaagg ttgtggactc gattagacct aagtgatcaa 2760 gaggacgagg gggaagatgg agaacctgag aaagcgttta gatgtgatac aagaagagct 2820 tctgaccatt tatgaagagg gcagtgaggt gctggcagat caggtgaagc attggaacct 2880 gatgcgcaaa gaaaatgtta tactgcactt tgcaaaaaag gcaggaatta tccggcttgg 2940 gctacagccc gtccctgctc ttcgggtgtc agctcagcgg gccaaagatg caatagaaat 3000 gcaactggtg ttgcagacgc tgctagagtc tccatttgct gcagagcggt ggaacctgca 3060 ggatactagc cgtgagacat ggacagccga gccctctaac tgttttaaaa aagggccaat 3120 gcttgtcgag gtgtactttg atggggacag agacaattcg atgcactaca ccttgtggca 3180 gtatgtgtac tacacggaca tgactgacca atggcagaag actaaatgcc atgtgagtgg 3240 cgaaggactc tggttttggg aaaatggcca ccagaggttc tatgtgcggt tcgcggatga 3300 ggccaaaaag tatggaactc ggggtcagtg ggatgtgatg tgtaaccatg aacctatttg 3360 ctcccccgaa tctgttacca gcacaacacc gccccaacac cctggtgcaa aaactgtggg 3420 acctgctcac ggggccgaac gggtggccgg aggaggtgga gctccgggaa cttggagaga 3480 gaggaagggg gcgtcgccga agtccctgcg cctgtgcgag accgccgact ccacagaccc 3540 cgccccacac gcccccgact cgcagcagga ggaggcacag gagcagatac accccaccgc 3600 agtcggacag cacggactgg gacgatctgc aggcactggg ggcgtgctcc ctcaccccgc 3660 cgctggggag tcccttgctg accccggagg aggtttggtt tcccaggtcc cagaacagcc 3720 cccctgttct gagtccctgc ccgggagcgt cacctctacc acgcccgagc ccaggcccct 3780 gtacgccccg gccgcgtctc ctggacctgg accaggatca gagactgccg catccctccc 3840 cgctgccgct gccggattcc aggccctccc tgacccaaca gaggaaggcc ctcgacaagg 3900 cactgcgcca ggttcagaag gacgctttcc agttggaagt agatataggc gccgacctag 3960 gccggttctt cgggaagctg gggattgcac cgcgtcagta gttgtccttg ccggaccctg 4020 caacacactt aagtgcttca ggtacagggc taagcagcaa tatcggggcc ttttctgcaa 4080 tattagtact acttggtatt gggcgggtga cgggtcggag aggatcgggg cagcgaggat 4140 actagtgact ttttcaaaca acgctcagcg tgcaggtttt ctggaacgtg tacggttgcc 4200 aacctccgtg agccttctgg aatccatcca cagtgtttga ggactttgtg gacattgcac 4260 tttgcatgga cactggacct gatcggtaac cactcatatg gacatctgcc tgccatgttt 4320 cccgttgcac ctctgtactg ggtcctccta gacattatac tcatactttt gatacttttg 4380 atactttttt tgtagtctga ttatactctg ttgcaatttc tatattgtca ttaccataaa 4440 cgcgcagagg atacccttgt cttgcttgca gtagccagac atggtccgcg cgcgtagact 4500 tcccagagcg tccgcggagg acctctacaa gacatgcaag catgctggca catgtcctga 4560 tgatgttatt aataaaattg aaggtaaaac cactgctgat aaaattcttc agattggagg 4620 cgcggcggtt ttctttggtg gtcttggtat tggaaccgga tcaggtcgtg gaggtgcaac 4680 cggttacacg cccctgggtg gacggacagg tacaggggtg acagtgggca cgggtacacg 4740 cgtggtccgt cctccagttc ctgtggacgc tgttggcgcc actgatgttt tgcctgtaga 4800 tgctttgggc ccctccattg tacctctgca ggaggttccc cccgaaatac ccctgctgga 4860 ggtcacccct gatgtgcccg gtgttcccga ggttcctctg cgtgtgcccc tggacacctc 4920 gggttcctcc gtggacagcg gtccggtcac agtgacagtg catgcggtaa ttgagccagt 4980 tcctagcgac ccccctgtta ggacatctgt aagctggtcg caacactcta atcctgcatt 5040 tgaggtgatt cctagcagta acaactctct gggggaaact tctgcctcca gcaacatatt 5100 tgtgacccat gaaaatgggg gcgtggagat agggtcatct gatcctgcgg tatttcgtga 5160 gttcatcaca agcactccca gggacacccc tgtgcgggtt tctggccccc gcaggggtgg 5220 gtacccacga cgtttcattg aacaggtgga gctgtcggac ctcagtgcag ttgtggaccc 5280 cggaccacgt gttgtgtttg gttatgacaa tcctgcatat gacacaaccc tggaatttga 5340 gcctccccca tatcctgcgg tgcggagcgc cccagatcaa aggttcaggg atgtccttag 5400 actgtctgca ccgcgctatg acctttcgga gtctggccat gtacgggttg gcagacatgg 5460 tatccggggg gcagtgacca ctcgtagtgg cgtgcagctt ggctcgcagg cacattttca 5520 tcacgagttg agtaccctca caatgccaga ggaggttgag cttacagtcc ttggtgagca 5580 gtccggcaca actgtcatag tgtctggtgg ctctgagtct tctatggagg tcgttagcct 5640 ggacacctct agttttacct ctatacagat gtcacctgcg gacttggagg agttgttggg 5700 tggcattgag gatgtcccta acttcgaaaa cctgcggttg gaatttccta gagggcgcaa 5760 cagggtgaca cttgaccttc ctactaccaa tcttgcaatg cctgggccta tagatgttgg 5820 cgggggtact gtgtatgttg actatcctcc tgcagacggg ggcggtccct atgggccctt 5880 tggtccgctg ccgcctgtca ttattgtgga tgtggcatct ggtgcaggaa cggactacta 5940 cctgcacccc tctttacaag ctaggagacg gcgcaggcgc aggcgccatt ttatgtagac 6000 gccattttcc tattccatac tgcagccatt tcctctgttt ctttttgcag atgtccgtgt 6060 gggtaccgaa cagccaacgt ctgtatctcc cccctacccc cgtgtccaag gttcttagca 6120 ctgactctta tgtcacacgc accaatgtct tttgccatgc agcttcagac aggcttctaa 6180 cagtgggcaa cccctttttt gaaatacttg cagatgatga tgtcacggtc aagattccta 6240 aggtgtccag taaccagtat agggtgttta gggtaactct tcctgatcct aatcaatttg 6300 ctttttccga gcgtcctaca catgatccgg acaaggagcg gctggtatgg ggcctgcgag 6360 gcctggatgt gggccgtggt cagcctatag gtattggggt tacgggtcat cctcttttga 6420 gcaggtttac ggacaacgaa aacccctcaa aatattcggg ggtggaaaag cagcctaagg 6480 attccagaca aaatgtggcc tttgatacta aacaaacaca attgcttatt gttggctgct 6540 cccccgctat aggggagcac tggtcccctg ctagggcatg caatggaacc aagaaaggtg 6600 actgtccacc tctggaactg aaaaacactg tgatacagga cggtgacatg cttgaggtag 6660 gttttggagc aatggatttt aggagtctgt ctcgcaatag atctgatgcc cctttggatg 6720 taatactatc aatatcgaaa taccctgatt atcttaaaat gagcaaggag gctagtgggg 6780 attctatgtt cttttttgca agacgggaac aggaatatat cagacatttt ttcagtaggg 6840 agggcaaggt gggtgagcct gtaccctcct ccctatactt tcctggggac agtgggcaac 6900 agcaagagaa aattggtact gctgtgtatt atgggacacc tagtggatca ctgacctcca 6960 gcgattcaca aatatttaat cgtccctact ggctacaaag gtcacaaggc ctaaacaatg 7020 gtatctgttg gctcaatcag ttgtttgtca ctgtcggaga caccacacgt ggaacaaaca 7080 tgacaatcac tgtatccacc aacgatgtcc ctacaaaata tgactcagat aatttcatga 7140 catatcttag gcacactgag gagtttgagc tgtcctttat tttccagttg tgcattgttc 7200 ctttgacccc ggaggttctt tcccacctac acactgtcaa tcctttaatt cttgagcact 7260 ggaatcttgg tgtgcagccc cctactgcta ctttgttgga ggacaaatat aggtttctgg 7320 attcccttgc cactagatgt ccggataagg ctcctccaaa gccttccgaa gacccttttg 7380 gtggttttac attctggggt gtggatctga ctgaacggtt ctctcaggac cttgaccagt 7440 tccctcttgg acgtaagttc cttgcacagt caaatatttc accaacgcgt aaacgtattc 7500 ggtccccctc cacatcctcc tcaaaaaagc gcactgtaaa acgaaaaaag aaataaatca 7560 gttatgttat gctttgtttt gcagttgcgt gctctgtgcc atgttttgct cctgtgtagt 7620 cagcaggccc tcccactaat gtacccaggc ccccatccaa cattccaccg taaaccgcac 7680 ccggttgcgc ccggtgacta aaagtttgca cctggatatt ttggctgtac atccaaccgc 7740 tcccggtact ttggagctgg catcgcaagc ggttggcacg gtgttgtgcc aaaaggatta 7800 gccaggtgtg catcaacttt gtcctgccag ctggaaggat taagaacagt agcagccaat 7860 tggcgccaag gaa 7873 //