ID JF414802; SV 1; linear; genomic RNA; STD; VRL; 7539 BP. XX AC JF414802; XX DT 13-MAY-2011 (Rel. 108, Created) DT 16-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Chicken astrovirus isolate GA2011, complete genome. XX KW . XX OS Chicken astrovirus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; OC Avastrovirus. XX RN [1] RP 1-7539 RX DOI; 10.1007/s11262-011-0663-z. RX PUBMED; 21879342. RA Kang K.I., Icard A.H., Linnemann E., Sellers H.S., Mundt E.; RT "Determination of the full length sequence of a chicken astrovirus suggests RT a different replication mechanism"; RL Virus Genes 44(1):45-50(2012). XX RN [2] RP 1-7539 RA Kang K.-I., Icard A.H., Linnemann E., Sellers H.S., Mundt E.; RT ; RL Submitted (21-FEB-2011) to the INSDC. RL Population Health, University of Georgia, 953 College Station Road, Athens, RL GA 30602, USA XX FH Key Location/Qualifiers FH FT source 1..7539 FT /organism="Chicken astrovirus" FT /host="chicken" FT /isolate="GA2011" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Aug-2007" FT /db_xref="taxon:336959" FT CDS 22..3441 FT /codon_start=1 FT /product="non-structural polyprotein" FT /note="ORF1a" FT /db_xref="GOA:F5BY96" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F5BY96" FT /protein_id="AEE88303.1" FT /translation="MAQAMAGAFSSLNRREDRKSAQVTAGLDKVFSFQGVHELFVRMRA FT LSGTTTAWKALMNSEAVYIKDVKTAFGANGSQIGFFFAETPTTPTWSPDAGIAILTEGE FT KTCLAAQQARDLRLKASLSTNSSLVHQIMEKTREAKEKTKQLEELQHRIDNMVDTNKVL FT YQRMEQRHQEKLEALGEKISKLRYDNHQWFMTCEKKDEEIANLKRQLETKKSGYKKMAW FT DAVAWFVLAILLFSFFSVSEGATPNGTLPIKDVSWNFDDVEKTCMKPDFGCLVMDTWLP FT HPVLTFEDLMSKCYNTHGNVIPRSAFNSEQLLYDCTKTAHYFNDGHDYIENYHWCEKRL FT ATLVAANCQGDNGVDKIYTQVVEAVAASRKFFQKMALYKLDVWILAIFSIVLAGNKEKI FT VKLTPFIALGWWFNLPIFLLSTAVNFFPTMALPFIAFQILQPGFLVVTAFTLWLTLTLA FT AFFWNDGIAILVETSFALFYTILFFVWSMAMTVCVSLQLSLAYQILLFCVSLSVYCGTK FT FACSQVVITNPDGTTEKVSRVGKVRKAAFQQCKGVLTFLQTRGIIPSTPVKTNSVVVIT FT GKNGAGTGFRFMNYIVTAGHVVTGSEWATAKFGDVSVKIKKEKEIDMCECPDTLVLFKL FT PKELQSVKPLRLAQNIKSNYMTLHGFCPNFVNPVSFTGWCTIDGPWLNNAFNTTFGNSG FT APYCDPDGKLVGIHLGTQGVTSQGFVICDTLRKQFETHYQCSCRREECDQQPAPAPPVQ FT FDYEEFLSKVITGTKVSHQAILKQQEEMLEQIQLVTKILQENGLLAEQKKKGKTKRTAR FT GAKATMTKKYLSKGHFMKMKMLSEEEYQKLVDEGFTADEIKEVVNNLREQAWLEYCIDN FT DIDDEGAEDWYDQMLNDEAINDQIDREIEAKMEDEGFYQSKARETLASQCKDKKRKTFA FT EQALLHIIDLKPHKVRTVKVEVQDESANQLKKVFKRMVKDEEVEQGQTKAFFSSGDDIE FT YFENRDIDWKKLEMPKLQDEVKFETITRNGITQISTGEDNKKNILKEKVTNIPQPLTPV FT PPFTENNPDTKPKKEQVLEQRKRVCRSCGSDKPHNFVVCKKKNELLFCVWCGIVHSENQ FT GHSRKIECPKCNKAFSGIEGLERHASECPSKN" FT CDS <3432..4982 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1b" FT /db_xref="GOA:F5BY97" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F5BY97" FT /protein_id="AEE88304.1" FT /translation="KKLVEGPDDSGPDYEPVPDYLKIFSWEDDLLPPIGKEALPENVIL FT LGHIPVDKLVSRTKKVTDPLLGVITSWKQDEYDSTTWTVKAYTKMFEKFFYKEPSDFVN FT NEPELTILCDRVVLDEHDYMANSSMTPITATIKNVDSTPAYPKFQEFDTEEEYLTRCGW FT SEYLDVIKNKETLNHRPLWWCFLKNEVLKKKKIQENDIRMILCTDPVFTRIGAMFDQDQ FT NSKMKNMTETRAAQVGWTPFFGGLDQRMRRLEKIENAQFVEMDWTRFDGTIPKALFWRI FT RQIRFFFLAPRYKTAANKELFDWYTKNLLEKIILLPTGEVCQIKRGNPSGQFSTTVDNN FT MCNVWLTTFEIAWLHRKQKGRLPTPTELRKNLKYICYGDDRLLAVSKDFVVYEPDTVVK FT MYADVFGMWVKPENVKVRDSLVGLSFCGMTIIKNSNNRYVGVPNVNKILSTLSTPTKRL FT PNIEALWGKLISLRILCENADPDVRDYLDKQIHCVEEYAAAEDIQLPEVGPDFFQKIW" FT CDS 5007..7238 FT /codon_start=1 FT /product="capsid precursor protein" FT /note="ORF2" FT /db_xref="InterPro:IPR004337" FT /db_xref="UniProtKB/TrEMBL:F5BY98" FT /protein_id="AEE88305.1" FT /translation="MADKAGPQKKRASRRGRGRSRSRSRSRSRSRNRVKKTVTIVETKK FT TPSKSILKKELDNHERKDRKRFRKLEKKLNGPKIHDRMAVTTTLGVLTGNSDNNLERKM FT RALLNPLLLKSQNTGASASPLSLRASQYSMWKIQRCVVKFVPLVGAANVAGSVSFVSLD FT QDATSSQPESPDTIKAKVHAEVSIGQRFNWNVQSRYLVGPRSGWWGMDTGESPTDTVGP FT ALDFWNLYRTVNTLQTGTTSQVYTAPLFSIEVFTVYAFSGYEPKPALATMTNSTFESQQ FT GVTITNGSNGELLLNVPQRSAFAERLREKETPQRAQNQTGGVGEVLWAVASGAVEGAAE FT ALGPWGWLLRGGWWVIKKLFGRTGEDANDVYVMYSSIEDANKDSRIYQTVTGSVQIQQG FT PLVLTQISSPNVNTSGGVVQVNSTTPNDYLPLSQESYAETPLKKYVLYDSTGNPVDSNM FT SHTMRITGYPESKLVTSSSVWLGTTGKSVQSTKWLMSDYTNTGVIFGFPYTSAPPGATV FT GNIGVIHTAKSLIKTIRYRRQNHLPTTPFESSLIPSASKGPSQMLGCFDTPYVWCRVCD FT NTCSTKPTDGAVTQRYNAWGLLVVSLAHDKVYVLSGYPNSQTAVPVQQLVWDTFDWDAN FT FSTGRIYSAVWPGEDGAEQEGSDTDDADSDISSLFDPMNEVEKDFHFQCSLKTSDYLKE FT EADFWKAKAQQLLMEKAMEKPSANPPLVRFEKGGPEQQKQPASSRGHAE" XX SQ Sequence 7539 BP; 2350 A; 1451 C; 1771 G; 1967 T; 0 other; ccgaaagcga gggtgtgggc gatggcccag gccatggcgg gggctttttc aagccttaac 60 aggcgagaag accgtaagtc ggcccaagta acagctgggc ttgacaaggt cttctcgttc 120 cagggcgtgc acgaactttt tgtaagaatg cgtgcgctgt ccggaacaac tacagcatgg 180 aaagccctga tgaatagtga agctgtgtat attaaagatg taaaaacggc ttttggcgcg 240 aatggttccc aaattggctt cttctttgct gagacaccca caacaccaac ttggtctcca 300 gatgctggga ttgctatatt gactgaaggt gaaaaaactt gtcttgcagc acagcaggca 360 agggatctgc gcctgaaagc ttcactaagc acaaacagct ctctggtcca ccagattatg 420 gagaagacaa gagaggccaa ggagaaaacg aaacaactcg aagaactcca gcatcgtatt 480 gacaatatgg tggatactaa taaagtcttg tatcaacgca tggaacagcg gcatcaggag 540 aagttggaag cccttggtga gaagatcagt aaacttagat atgataacca tcagtggttc 600 atgacttgtg agaaaaagga tgaggaaata gcaaacctca agcgtcaact tgaaactaaa 660 aagagtggct ataagaaaat ggcctgggac gcagttgctt ggtttgtgct agctatcctc 720 ttattcagtt ttttctctgt gagtgaaggt gccacaccta atggaacttt accaattaag 780 gatgttagtt ggaactttga tgacgtggaa aaaacttgca tgaaacctga ttttggctgt 840 ttggttatgg acacctggct accacatccc gtcctaacgt ttgaggactt aatgtctaag 900 tgctacaata ctcatgggaa tgtcatacct cgtagtgctt ttaatagtga acaactcttg 960 tatgactgca caaaaacggc acactatttt aacgatgggc atgactacat tgaaaattac 1020 cactggtgtg agaaaaggtt agcaactctg gtggcagcaa actgtcaagg agataatggt 1080 gttgataaga tctatacgca agttgtcgag gctgtggcag caagtaggaa attctttcag 1140 aaaatggcac tctataagct tgatgtttgg atactagcta tttttagtat tgtgttagcg 1200 ggaaataagg aaaaaatagt aaaattaacc ccttttatag cgttaggctg gtggtttaat 1260 ttacctatat tcctactgag taccgctgtt aacttctttc ctacaatggc cttgcctttt 1320 attgcgttcc agattctcca accagggttt ctagttgtaa cagcctttac attgtggttg 1380 acactaacac ttgctgcttt cttttggaat gatggaatag ccatcttagt tgagacgtca 1440 tttgccttgt tctacacgat cttgtttttt gtttggtcga tggcaatgac agtctgtgtt 1500 agtttacagt tgagtttagc gtaccaaata ctcttgttct gtgtttcgct tagtgtgtat 1560 tgtggaacaa agtttgcgtg tagtcaggtt gttataacaa atcctgatgg aacaacagaa 1620 aaagtttcaa gagtaggtaa ggttaggaaa gcagcctttc aacagtgtaa gggtgtattg 1680 accttcttgc aaacacgggg gattattcca tccacacctg ttaaaactaa tagtgtagtc 1740 gttattacag gaaagaatgg tgcaggtact ggatttaggt ttatgaatta tattgtcaca 1800 gcaggccatg ttgtcaccgg tagtgaatgg gcaacagcta aattcggtga tgtttcagtt 1860 aaaattaaga aggaaaaaga aattgacatg tgtgagtgcc ctgacacact tgtccttttt 1920 aaattaccaa aggaattgca gagtgttaaa ccattaagat tagcccaaaa tataaagtca 1980 aattatatga cattgcacgg gttttgtcca aattttgtca accctgttag ttttacaggc 2040 tggtgtacta ttgatggacc ttggctaaac aatgctttta atacaacttt tggtaatagt 2100 ggtgctccat actgtgatcc cgatgggaag cttgttggta ttcacctagg aacccaagga 2160 gtaacttcac aaggttttgt tatatgtgat actcttagaa agcaatttga aacacactat 2220 cagtgttcgt gcaggagaga agagtgtgat caacaacctg caccggcacc acctgtgcag 2280 ttcgactatg aagaattttt gtctaaagtt ataacaggaa caaaggtttc ccatcaggcc 2340 atactgaaac aacaagaaga aatgttagag caaattcagc ttgtaacaaa gattcttcag 2400 gaaaatggct tgttagctga acagaagaag aaaggaaaaa caaaaagaac tgctcgtggt 2460 gctaaggcta caatgacaaa gaaatacctt tccaaaggac acttcatgaa aatgaaaatg 2520 ttaagtgaag aggagtacca aaaattggtg gatgaaggct tcactgccga tgagattaaa 2580 gaagttgtca acaaccttcg ggagcaagca tggcttgaat attgtattga caatgatatt 2640 gatgatgagg gagcagaaga ttggtatgat cagatgttaa atgatgaggc aattaatgac 2700 caaattgata gggaaattga agcaaaaatg gaagatgaag gcttttatca atcaaaagcc 2760 agagaaactt tggcatcaca gtgcaaagat aaaaaacgca aaacttttgc tgaacaggcc 2820 cttctgcata ttatagatct taaacctcat aaggttagga cagttaaggt tgaggttcag 2880 gacgagagtg ccaaccaact caaaaaggtc tttaagagaa tggtcaaaga cgaggaagtt 2940 gaacaggggc aaacgaaggc cttcttttct tcaggtgatg atatagaata ttttgaaaat 3000 cgtgatattg attggaaaaa attggaaatg ccaaaattac aggatgaggt taaatttgag 3060 accatcacgc gcaatggcat aactcaaatt tctactggtg aggataataa gaaaaacatc 3120 ctcaaagaaa aggtcacaaa tataccacaa ccgttgacac cagttccacc gtttacggag 3180 aataatccgg acactaagcc taaaaaggag caggttcttg aacaacggaa gagggtttgt 3240 aggtcatgtg gtagcgacaa accccacaac ttcgttgtgt gtaagaaaaa gaatgagctc 3300 ttgttctgtg tctggtgtgg tatagtgcac tctgagaacc aaggccactc acggaaaatc 3360 gaatgcccta aatgcaacaa ggcattctct gggatagagg gtcttgaacg ccatgcgagt 3420 gaatgccctt caaaaaacta gtggagggcc cagatgattc tgggcccgat tatgaacctg 3480 tccccgacta tttgaagatt ttttcttggg aagatgactt gctacctcca attggaaaag 3540 aagctctacc tgaaaatgtt atacttcttg gccatattcc ggttgataaa ttggtttcta 3600 gaacaaagaa ggtaactgat ccactacttg gagttatcac ttcttggaaa caggatgaat 3660 atgatagtac cacatggact gttaaggcgt acactaaaat gtttgagaaa ttcttctata 3720 aagaaccatc agattttgtg aataatgagc cagagctcac catcctatgt gatagggtgg 3780 tgcttgatga acatgattat atggcaaata gttctatgac gcctattaca gcgactataa 3840 aaaatgtgga ctcaacacct gcttatccaa aattccagga gtttgatacc gaagaagaat 3900 atcttacccg ttgtggatgg agtgaatacc tcgatgtcat taagaacaaa gaaactctca 3960 accataggcc attatggtgg tgcttcctta aaaacgaagt tctcaagaaa aagaaaattc 4020 aagagaatga tattaggatg attttatgta cagatccagt cttcactcga attggagcaa 4080 tgtttgatca ggaccaaaat tcaaaaatga aaaatatgac agaaacgagg gccgcacaag 4140 tgggctggac ccccttcttt ggtggacttg accagcgaat gcggaggttg gagaagattg 4200 aaaacgccca gtttgtagaa atggattgga cccgctttga tggcactatt ccaaaggcgc 4260 ttttttggcg catccggcag atcagattct ttttcctagc gccccggtat aaaaccgcgg 4320 ctaacaagga attgtttgat tggtacacta aaaatctgct ggagaaaata attctcttac 4380 caactggaga agtgtgtcag ataaaaaggg gtaatccttc tgggcagttc tccaccacag 4440 ttgataacaa tatgtgtaat gtgtggttaa ctacctttga aatagcatgg ctccaccgca 4500 aacagaaggg cagactcccc actcccactg agttgaggaa aaatcttaag tacatttgct 4560 atggtgatga caggctcttg gcagtttcaa aggattttgt ggtctatgag cctgacactg 4620 ttgttaaaat gtatgcagat gtatttggga tgtgggtgaa accagaaaat gtaaaagtta 4680 gagatagcct agttggtctc tcgttctgtg ggatgacaat tatcaaaaat tcgaacaacc 4740 gttatgtagg ggttcccaat gtaaataaaa ttctttctac tctcagtact cctacaaaaa 4800 ggcttccaaa tatcgaggcc ttgtggggga aattgatctc actgcggatc ctttgtgaga 4860 atgctgatcc cgacgtcagg gactacttag ataaacagat ccactgcgtc gaggaatatg 4920 ctgctgctga agatatacag ttaccagaag tcgggcccga cttctttcag aaaatctggt 4980 agagggatgg accgaaatag agcagcatgg ccgataaggc tgggccgcag aagaagaggg 5040 catctaggcg cgggcgtggc cgctctcgct caaggtcacg ctcacgctct cgatcaagaa 5100 atcgtgtcaa gaaaacagtc acgatcgttg aaacaaaaaa gaccccaagt aagtcaatcc 5160 tgaaaaagga gttggataat catgagagga aagatagaaa aaggttcaga aaattggaaa 5220 agaaattaaa tggaccaaaa attcatgatc gcatggcggt tacaaccact cttggtgttc 5280 tcactggcaa ttctgacaat aatttggaaa ggaagatgag ggcattgctc aaccccttac 5340 tcttaaaatc ccagaacact ggagcatcgg catcaccact ctctcttaga gcctcacagt 5400 attcaatgtg gaaaatacag cggtgtgttg ttaaatttgt accgctggtg ggagcagcaa 5460 atgttgctgg aagtgtgtca tttgtgtcgt tggaccaaga tgcaacatcc tctcaacctg 5520 aatcacctga tactataaag gcgaaagtgc atgccgaggt gtccattggc cagaggttca 5580 actggaatgt gcaatctaga taccttgttg gaccgcggtc tggctggtgg ggtatggaca 5640 ccggagagtc accaactgac acagttggtc cagcacttga tttttggaat ttatatagga 5700 cagtaaatac tcttcagact ggaacaacat cacaagtcta cactgctcca ttattctcta 5760 tagaagtgtt caccgtctat gcattctcgg gatacgagcc taaacctgcc cttgctacaa 5820 tgacaaattc tacttttgaa agtcagcagg gggtaaccat aacaaatggt tccaatggtg 5880 aacttcttct taacgttcca caaaggtcgg catttgcaga aaggctccgc gaaaaagaga 5940 caccacagcg tgcgcaaaat caaaccggcg gggttggaga ggtgctgtgg gctgtagcat 6000 ctggtgcagt ggaaggggct gcagaagcgt tgggcccgtg gggctggcta ctaagaggtg 6060 gctggtgggt cattaaaaaa ttatttggta gaaccggaga agatgcaaat gatgtgtacg 6120 tgatgtattc atcaattgaa gatgcaaaca aagacagtag aatatatcaa actgtcactg 6180 gatcggtgca aatacaacaa ggcccactcg ttctaacaca aatctcatcg ccgaatgtga 6240 atacatccgg aggggttgtt caggtaaatt caaccactcc aaatgactac ttgcccctct 6300 ctcaagaaag ttatgcagag acaccattga aaaaatatgt actttatgac agcaccggga 6360 accccgttga tagcaatatg agccacacca tgaggataac agggtatcct gagtcaaaac 6420 tagtgacatc aagctcagtc tggctcggta caactggtaa gagcgtacaa tcaactaaat 6480 ggctgatgtc cgattacaca aatacagggg tcatatttgg ttttccttat acgagcgcac 6540 caccgggagc aactgtcggc aacattggtg tcattcatac tgcaaaatca ttaattaaga 6600 caatcagata cagaagacaa aaccatcttc caacaacacc ttttgaatct tccctgatac 6660 cgtcagcgtc aaaaggaccc agtcaaatgc taggatgttt tgacacccca tacgtatggt 6720 gtagagtttg tgataataca tgctccacca agcctactga tggtgcagtt acacagaggt 6780 acaatgcatg gggcctgctg gtggttagcc ttgcccatga taaggtgtat gtactatcag 6840 gctatccaaa ttcacaaaca gcagtaccag tgcaacaatt ggtttgggat acttttgact 6900 gggatgcaaa tttttccact ggcagaattt atagcgcagt atggccaggt gaagatggtg 6960 ctgaacagga aggttcagac actgatgatg ctgactctga catttccagt ctttttgacc 7020 caatgaatga ggtggaaaag gacttccatt tccagtgtag tctcaaaact tctgactact 7080 taaaagagga ggctgacttt tggaaagcaa aggcgcaaca gctactcatg gagaaggcaa 7140 tggaaaaacc aagtgctaat cctcctcttg tccgcttcga gaagggtgga cctgagcagc 7200 aaaaacaacc tgctagcagc cgcggccacg ccgagtagga tcgagggtac agctgcacct 7260 cctcaatgga gtttttatgc cgtaatcagg cttttctcca ttcaaaaatt aaggcaccgg 7320 ggccacgccg agtaggatcg agggtacagt gccgggttga cctcacctta aagaggcgtc 7380 cgccggtatg gaaatcacca tgctggagtc tggttaagat cacagacaat cactctgtgt 7440 gtaaatcagg cttgtcgggc ggttttggaa acgtaggttt ttaaaaccaa tttgattttg 7500 aattaaatta attggcattt aaaaaaaaaa aaaaaaaaa 7539 //