ID HQ916317; SV 1; linear; genomic RNA; STD; VRL; 6301 BP. XX AC HQ916317; XX DT 18-MAY-2011 (Rel. 108, Created) DT 26-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Bovine astrovirus B76-2/HK, complete genome. XX KW . XX OS Bovine astrovirus B76-2/HK OC Viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; OC Mamastrovirus; unclassified Mamastrovirus. XX RN [1] RP 1-6301 RX DOI; 10.1099/vir.0.030817-0. RX PUBMED; 21508185. RA Tse H., Chan W.M., Tsoi H.W., Fan R.Y., Lau C.C., Lau S.K., Woo P.C., RA Yuen K.Y.; RT "Rediscovery and genomic characterization of bovine astroviruses"; RL J. Gen. Virol. 92(Pt 8):1888-1898(2011). XX RN [2] RP 1-6301 RA Tse H., Chan W.-M., Tsoi H.-W., Woo P.C.Y., Lau S.K.P., Yuen K.-Y.; RT ; RL Submitted (22-JAN-2011) to the INSDC. RL Microbiology, The University of Hong Kong, Pokfulam Road, Hong Kong, China XX FH Key Location/Qualifiers FH FT source 1..6301 FT /organism="Bovine astrovirus B76-2/HK" FT /host="cattle" FT /strain="B76-2/HK" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /db_xref="taxon:1027247" FT CDS join(47..2455,2455..3963) FT /codon_start=1 FT /ribosomal_slippage FT /product="nsp1ab" FT /note="non-structural polyprotein" FT /db_xref="GOA:F6LD33" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F6LD33" FT /protein_id="AED89611.1" FT /translation="MSLYINRADEAIASSDRTQITPRFDAREWFDELRRIGSNIPWYIT FT YQPRMFFYPTLKPDRVLTASTVCEGEWRTFVLDVEHGLHKATEVNHIPDHQPTILAAAL FT MHDRSEKAREISDLKLENEILRGQLAVYRQEHKTTPRFALSWTTLFALVFLGFSLFWHS FT AHGLTTTSTTESVNPMEMLKLNIWLDNFVSEAKRIIHTHRTTVMDAVRTSPSWLIASTL FT IPHLWTIVTIVLGIMSVYRSERRVLSICFLAAATMSGGDWLFLSSASSQTVVSAICQIV FT CVLVSHIDPLGAICLSSLIMFGTFLASMCCTNTEFIQHSRAASINTAVLVMSIVLRTMQ FT LPAMPIALALAAVRAYTIITTPTGATIEVRSEDGKVISKDPVKPGILFRFKQGLKKRFA FT QLRSSMPPLVRVNPTAVVRVETPDGVGTGFFCANYIVTAGHVLGPHKVASICIGVAKYQ FT TTLVRHIEGKDIALLKIPQQVQNYPRLKIASKIETEWVCIYSPDGDGAIVQSVVPGHQV FT DDCIDYAVPTRDGMSGAPLVNPDGRVMAVHLTNTGFTGGAQILTQADVTDPPKGSANED FT KLKQEIEELKKQLAKCNQSSTQAEIVGLVRAAMAREMTILREELNKELRSVPQYDQAKG FT KTKMKARRLRMAGSKPRRQRGPVFTEEEYNRLLESGLTPDEIRDMVDRLYDKEVAGFPE FT WDPMDDGYDPNEDWTFESDSNFGQRQVKVPSFNQYMERDYDVKDVENMLRSLTCADVEA FT IGPLYPITAHCIGSPLCPALLCLVDRYAASRGLSPPSFGLPYTQRRVPKNREAGPTTAA FT PEIHKLDAWETLRLPPSRRVVPDDYPVVCNLPINRPIYEEKLVDDPLLGLLPPCDPDLP FT FAPAVWGPQAYTKSFEKFTYAEPSRFWELYPEECAFADKQWRKHYNFLEDTRVMHITAT FT EKNIDSTPGYPKCELHDSERDYLECNGWAPYIREFKRVDSGAQPRVLWYCFLKKEQLKK FT EKIRDGDIRQIICPDVIYSRIGAALEQHQNNLMKKNTDTSSGQCGWTPFFGGFAEKMRR FT LDKNKIIEFDWTRFDGTIPRALLKHIKDLRWEKINKQHRERYKHVHDWYVHNLLTRYVL FT MPTGEVTIQRRGNPSGQISTTMDNNMVNYWLQAFEFAFLNKGKDIETLWSDYDTIVYGD FT DRLTSSPSVPDDYVPRVVAMYKDVFGMWVKPEKVKVTDTIIGASFCGFTVGKNYQPVPS FT NPEKLWASLVTPCQKLPDEFALYGKLLSFKILMHNCEDHPFKDYIEKCIAALEHGRSLP FT KITDEQLDRLWRGGPKTNPNG" FT CDS 47..2500 FT /codon_start=1 FT /product="nsp1a" FT /note="non-structural polyprotein; ORF1" FT /db_xref="GOA:F6LD34" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F6LD34" FT /protein_id="AED89610.1" FT /translation="MSLYINRADEAIASSDRTQITPRFDAREWFDELRRIGSNIPWYIT FT YQPRMFFYPTLKPDRVLTASTVCEGEWRTFVLDVEHGLHKATEVNHIPDHQPTILAAAL FT MHDRSEKAREISDLKLENEILRGQLAVYRQEHKTTPRFALSWTTLFALVFLGFSLFWHS FT AHGLTTTSTTESVNPMEMLKLNIWLDNFVSEAKRIIHTHRTTVMDAVRTSPSWLIASTL FT IPHLWTIVTIVLGIMSVYRSERRVLSICFLAAATMSGGDWLFLSSASSQTVVSAICQIV FT CVLVSHIDPLGAICLSSLIMFGTFLASMCCTNTEFIQHSRAASINTAVLVMSIVLRTMQ FT LPAMPIALALAAVRAYTIITTPTGATIEVRSEDGKVISKDPVKPGILFRFKQGLKKRFA FT QLRSSMPPLVRVNPTAVVRVETPDGVGTGFFCANYIVTAGHVLGPHKVASICIGVAKYQ FT TTLVRHIEGKDIALLKIPQQVQNYPRLKIASKIETEWVCIYSPDGDGAIVQSVVPGHQV FT DDCIDYAVPTRDGMSGAPLVNPDGRVMAVHLTNTGFTGGAQILTQADVTDPPKGSANED FT KLKQEIEELKKQLAKCNQSSTQAEIVGLVRAAMAREMTILREELNKELRSVPQYDQAKG FT KTKMKARRLRMAGSKPRRQRGPVFTEEEYNRLLESGLTPDEIRDMVDRLYDKEVAGFPE FT WDPMDDGYDPNEDWTFESDSNFGQRQVKVPSFNQYMERDYDVKDVENMLRSLTCADVEA FT IGPLYPITAHCIGSPLCPALLCLVDRYAASRGLSPPSFGLPYTQRRVPKNGKRGQQQRP FT QKSTN" FT misc_feature 2449..2455 FT /note="ribosomal slippage site" FT CDS 3908..6226 FT /codon_start=1 FT /product="capsid protein precursor" FT /note="ORF2" FT /db_xref="InterPro:IPR004337" FT /db_xref="UniProtKB/TrEMBL:F6LD35" FT /protein_id="AED89612.1" FT /translation="MSSWIVFGGEDQRQILMASRKQQNRRATRNTTNIVVRNGAAANQA FT GAVGGQRRRRNRRNNKAPQVNVRVLSNQAKGFRRNPRRQGVGNRVVFQKINTTLGTVGS FT NGSEQIECELTCLMNPATMKEATGSNSFGPLGIYASTYSLFRMTRCTVTLKPLVGDSAV FT SGTVARVSWNPTSTPTQTSWSALGARKHVDVTPGKTGKFTLTTRDLVGPKGGWYKTNTK FT GDPMMSFAGTLEVHTLGRTMSTYRNEQFNGGLFLAELETEWQFKDYSQQPGMLNLIKGE FT DTQQSHIQTDANGKIQLVVPNNSRMARAATGAASEIIWLVTDTIIQAGTSVLPPPFSWL FT IRGGWWLVKRAAGAPVRAGQTTFDVYASISDARADMPCISTTTNMNPIQVGGLHFQQVT FT PGNTGISTETYETRAIQQDTNTTTIAVTKALQYVYPPSGDAMMPAQAQWFNATAATTQI FT SSNGFGFLVGSNRWGTHNLLEVEVNIDGGYQQFPNRIPVYFFYNNQQTLAGYAVGNQRD FT LHQENPSLRVSSVLFQATSSHAYNFSATWQRAVVHYPKSTAITTQASAVVETGSGNTNL FT RNRVVAGRWYVLQFVNIGVVNKALVAGSAELAYTATGAWPTGNTDFTPTVDDASTGLIP FT TYASGLHFNTFESTTLAESTSYAAPRLELDESEYYDMPPLEEDEDADDEGEEDTTDADL FT ELGPMDDYDDPPMSRLVVHPDVQKTFEILLELHPEREARLAANRLKPSDEYSEFTRLYH FT DALVDGLSPRAARAHALGL" XX SQ Sequence 6301 BP; 1575 A; 1790 C; 1632 G; 1304 T; 0 other; ccaaaacagg tcggatagta ttgttgagtt tagagaatta gtgaaaatgt ctctttacat 60 caaccgtgct gatgaggcga tagcctcaag tgacagaacc cagataacgc cgcgttttga 120 cgctcgcgag tggtttgatg aactccgcag gatcggatct aacataccgt ggtacatcac 180 ataccaacca cggatgtttt tctacccgac tctcaaaccc gaccgcgtct taacagcgag 240 cactgtctgc gagggggagt ggcgcacgtt cgtcctcgat gttgagcatg gcctccacaa 300 agcgacagag gtcaaccaca tcccggacca ccaaccaacc atcctcgccg ctgccctgat 360 gcacgacaga tctgagaagg cacgtgaaat atccgacttg aagctcgaga acgagatcct 420 tcgagggcag ttggcagtgt accgacagga gcataagact acaccacgct tcgctctgag 480 ctggaccacc ctgtttgccc tagtgtttct cggtttctca ctcttttggc actccgcgca 540 tgggctgaca acaacatcca ccacagaatc agtcaacccc atggagatgc tcaaattgaa 600 catctggctt gacaactttg tgagcgaggc caaacgcatc atccacaccc acaggaccac 660 ggtcatggat gcagttcgca catcaccttc ttggctcatc gctagcacat tgatccccca 720 tctctggacc atagtgacta ttgtacttgg cattatgtca gtttacaggt cggagcggcg 780 ggtgctttca atctgcttcc tggctgccgc aactatgagt ggtggggatt ggctcttcct 840 ttccagcgcg tcgtcgcaga cagttgtgag tgccatctgc cagattgttt gcgtcttggt 900 ttcccacatc gacccgctcg gggcaatttg tctctcctcg ctcatcatgt ttgggacatt 960 cctggccagc atgtgctgca ccaacaccga gttcatacag cactctagag ctgcgtcaat 1020 caacactgct gttctcgtga tgtcgatcgt gctccgcact atgcagctgc cagccatgcc 1080 aatcgccctt gcgcttgccg cggtgcgggc ctacaccatc atcacaacac ccacaggcgc 1140 gacaattgag gttcgcagcg aggacgggaa ggtgatttcc aaagatccag tcaagcctgg 1200 catactcttc aggttcaagc aggggctgaa gaagaggttt gcacagctaa ggtcatccat 1260 gccaccgctc gtgcgcgtca atccaacagc agttgtccgt gttgagaccc ctgatggtgt 1320 tgggacagga tttttctgtg caaattacat cgtcacagcc ggacacgtgc ttggccctca 1380 caaagtggca tctatctgca ttggcgttgc caagtaccag accaccctgg tgcgccacat 1440 cgagggcaaa gacatcgccc tcttgaagat cccccagcaa gtgcaaaact acccacggtt 1500 gaaaatcgca tcaaagatag agaccgagtg ggtttgcatc tactcaccag acggggatgg 1560 cgcaatcgtc caatcggtcg tcccaggcca ccaggtggat gactgcattg actatgcggt 1620 ccccactagg gacggcatgt ctggtgcgcc tctcgtcaat ccagacgggc gtgtcatggc 1680 agtccacctt actaacactg gttttacagg tggggctcaa attctgaccc aggcagatgt 1740 aaccgacccc cccaagggca gtgccaatga ggacaagctc aagcaggaga ttgaagagct 1800 aaagaagcag cttgccaaat gcaaccagtc aagcacccaa gcagaaattg ttgggttggt 1860 tcgcgccgca atggctcgcg agatgaccat cctgcgagag gagctcaaca aggagctgag 1920 gtccgtccct cagtatgacc aggccaaggg caaaaccaaa atgaaggcta ggagacttcg 1980 catggccggc tccaagcccc gccgccagcg cggccctgtc ttcactgagg aggagtataa 2040 ccggctcctc gagtctggtc tcactccaga cgagatccgt gacatggtgg accggctcta 2100 tgataaggaa gtggcaggat ttccagagtg ggacccaatg gatgatggct atgaccccaa 2160 tgaggattgg acgttcgagt cagactcaaa tttcgggcaa aggcaggtca aggtcccatc 2220 cttcaatcag tacatggagc gggactacga tgtcaaggac gtggagaaca tgctccgttc 2280 actaacctgc gccgatgttg aagccattgg accgttgtat cctataaccg cccactgcat 2340 cggttctcct ctatgccctg ccctcctgtg ccttgtcgat aggtatgccg cgtctagggg 2400 actatccccg ccatcatttg gccttcccta cacccagcga cgggttccaa aaaacgggaa 2460 gcggggccaa caacagcggc cccagaaatc cacaaactag acgcatggga gacgctgcgc 2520 cttccaccat caaggcgcgt tgtcccagac gactaccctg tcgtctgcaa cttaccgatc 2580 aacaggccca tttatgaaga gaaattggtt gacgacccgc tccttggact tctaccacca 2640 tgtgaccctg accttccatt cgcacccgcg gtgtgggggc cacaggcata caccaaatca 2700 tttgagaagt tcacgtacgc cgaaccatct agattttggg agctctaccc cgaggagtgt 2760 gcctttgccg acaaacagtg gcgcaaacac tacaacttcc tcgaggatac ccgggtgatg 2820 catataacag caactgaaaa gaatatagat tccacacctg ggtaccccaa atgcgagctc 2880 catgatagcg agcgtgatta cctcgagtgc aatgggtggg ccccatacat acgcgagttt 2940 aaacgtgttg attctggtgc gcagccacgt gttctgtggt actgcttcct gaagaaagag 3000 cagctcaaga aagagaagat cagagatggc gacattcgcc aaatcatatg tcctgatgtg 3060 atctactccc gcatcggggc cgcccttgag cagcaccaaa acaacttaat gaagaagaac 3120 acagacacca gtagtggcca gtgtgggtgg accccgttct tcgggggctt cgcggagaag 3180 atgcgccggc tagacaagaa caagattata gagtttgact ggactcgttt tgatggcacg 3240 atcccacgtg ctttacttaa acacatcaag gatctccgat gggagaagat caacaaacag 3300 cacagagaga ggtacaagca cgtgcacgac tggtacgtcc acaacctcct caccagatat 3360 gtgctcatgc ccactgggga ggtcacgatc caacgcagag gcaacccctc aggacagatc 3420 tccaccacga tggataacaa catggtgaac tattggctgc aggcctttga gttcgccttc 3480 ctgaacaagg ggaaggacat tgaaaccctc tggagtgact atgacaccat cgtgtatggt 3540 gatgacaggc taacgtcgtc accgagtgtt ccggatgact atgtcccccg cgtggttgcc 3600 atgtacaaag atgtgtttgg catgtgggtc aaacccgaga aagtgaaggt cacagacacc 3660 atcataggcg catccttctg cggctttacc gttgggaaaa actaccaacc agtgccatcc 3720 aatcctgaga agctctgggc gagccttgtc acgccctgcc agaaattgcc agatgaattt 3780 gccctctatg ggaaactcct tagctttaag atcctgatgc acaactgtga agaccatccc 3840 tttaaggatt acattgagaa gtgcatcgct gccctggagc acggccgctc cttgcctaaa 3900 attactgatg agcagctgga tcgtctttgg aggggaggac caaagacaaa tcctaatggc 3960 tagccgcaaa cagcagaaca ggcgtgccac gcgcaacacg actaacatcg tggtgcgcaa 4020 tggagcagct gccaaccagg caggagctgt cggaggacag cgtagacgga ggaacaggag 4080 gaacaacaaa gcgccgcagg tcaacgtgcg ggtgctatcc aaccaagcta agggtttccg 4140 caggaatcct cgccgccagg gcgtcggtaa ccgtgtggtt ttccagaaga tcaacacaac 4200 cctcggtaca gttggatcca acggaagtga acagattgaa tgcgagctca cgtgcttgat 4260 gaacccagcc accatgaagg aagccacagg gagtaacagc tttggccccc ttggtatcta 4320 cgcatccacc tactccttgt tcaggatgac aaggtgtact gtcaccctca aaccacttgt 4380 gggtgatagt gctgtctcag gcacggtcgc gcgtgtgtcc tggaacccaa cctcaactcc 4440 aacgcaaaca tcctggagcg cactgggggc taggaagcac gtggacgtca cacctgggaa 4500 gacagggaag ttcacgctca ccactcgaga tctggtgggc cctaagggtg ggtggtacaa 4560 aaccaacacc aagggggatc ccatgatgtc atttgcgggg acgctcgaag tccacaccct 4620 cgggcgcaca atgtcaacgt accgcaatga gcaatttaat ggtggcctct ttctggccga 4680 gcttgagacc gagtggcagt tcaaggatta ttcacagcaa cctggtatgc tcaacctcat 4740 caaaggcgag gatacacagc agtcccatat ccaaactgat gccaatggca agatccagct 4800 cgtggtgcca aacaactcgc gcatggcacg cgctgcaacc ggtgccgcga gcgagataat 4860 atggctggtc actgacacca tcatacaggc gggcacgagt gtgctccccc caccattctc 4920 atggctcatc cgtggcgggt ggtggctcgt caagcgcgcc gccggcgccc cagtgcgcgc 4980 agggcagaca acctttgacg tgtacgcctc catctctgac gcgcgcgctg acatgccatg 5040 catctcaacc acaaccaaca tgaaccccat ccaggttgga ggtctccatt ttcaacaggt 5100 caccccaggc aacaccggta tctcaactga gacctatgaa acacgtgcca tccagcagga 5160 caccaacacc accaccattg ccgtcaccaa ggctttacag tatgtctacc caccaagtgg 5220 tgacgcaatg atgccagcac aagcacagtg gttcaatgcc accgccgcga caacccagat 5280 atcatcaaat ggatttggtt ttctggtcgg cagcaaccgc tggggcaccc acaacctgtt 5340 ggaggttgag gtcaatattg acgggggata ccaacaattt ccgaatagga taccagtgta 5400 cttcttttac aacaatcagc aaacattggc tggatatgcc gttgggaacc aaagagacct 5460 acaccaggaa aacccatcac tgcgggtctc gtctgtcctc ttccaggcca caagctcaca 5520 tgcatacaac ttcagcgcaa cctggcaaag ggctgtggtc cactatccca aatcgaccgc 5580 catcacgacc caagcctccg ccgtcgttga aacaggtagc gggaacacca acctccgcaa 5640 ccgtgtggtc gcaggcaggt ggtatgtgtt gcaatttgtt aacattggag ttgtaaataa 5700 agcgcttgtc gccggttccg cggagctggc gtacaccgca acaggggcat ggccaacagg 5760 gaacaccgac ttcacaccaa ccgtggatga cgcctcgact ggcctcatac caacctatgc 5820 ctccggactc cacttcaaca ccttcgagtc gacaacactc gccgagtcca ccagttatgc 5880 tgccccgcgc ctggagcttg atgagtctga gtattatgac atgccacccc tcgaggaaga 5940 cgaggacgct gatgatgagg gggaggagga taccacggat gccgaccttg agcttggccc 6000 aatggatgat tatgatgacc caccaatgtc ccggttggtg gttcatccgg atgtgcagaa 6060 gaccttcgag attcttctcg agcttcatcc agaacgggaa gcccgcttgg cagcgaatcg 6120 gctgaaacca agcgatgagt acagcgaatt caccaggctg taccacgacg cgttagttga 6180 tggcctatca cctagggcag ctagggctca cgccctgggg ctctaggatg gcacgcgcgt 6240 tgtgtaattc taatcaggtt tttcagtttc atttgtgatt tgattagcat aggtgaaggg 6300 g 6301 //