ID HQ916316; SV 1; linear; genomic RNA; STD; VRL; 6253 BP. XX AC HQ916316; XX DT 18-MAY-2011 (Rel. 108, Created) DT 26-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Bovine astrovirus B76/HK, complete genome. XX KW . XX OS Bovine astrovirus B76/HK OC Viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; OC Mamastrovirus; unclassified Mamastrovirus. XX RN [1] RP 1-6253 RX DOI; 10.1099/vir.0.030817-0. RX PUBMED; 21508185. RA Tse H., Chan W.M., Tsoi H.W., Fan R.Y., Lau C.C., Lau S.K., Woo P.C., RA Yuen K.Y.; RT "Rediscovery and genomic characterization of bovine astroviruses"; RL J. Gen. Virol. 92(Pt 8):1888-1898(2011). XX RN [2] RP 1-6253 RA Tse H., Chan W.-M., Tsoi H.-W., Woo P.C.Y., Lau S.K.P., Yuen K.-Y.; RT ; RL Submitted (22-JAN-2011) to the INSDC. RL Microbiology, The University of Hong Kong, Pokfulam Road, Hong Kong, China XX FH Key Location/Qualifiers FH FT source 1..6253 FT /organism="Bovine astrovirus B76/HK" FT /host="cattle" FT /strain="B76/HK" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /db_xref="taxon:1027248" FT CDS join(44..2446,2446..3954) FT /codon_start=1 FT /ribosomal_slippage FT /product="nsp1ab" FT /note="non-structural polyprotein" FT /db_xref="GOA:F6LD30" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008760" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F6LD30" FT /protein_id="AED89608.1" FT /translation="MSLYINRADEALASHDRAQLKPRFDAREWFDEMRRIAPTVPWYVV FT YKPRSYFYPTRTDVPEPQAVLTASTVCEGEWRTFIMDTQSGRPVMIEVNHILDHQPTIL FT AAALIHDRAEKSKTISELRLDNELLRGQIAFMRQEYATTTPRFTMSWATLFALVFLGFS FT LFWHSAHGLTTTSTTDSVNPMEMLKLNIWLEDFISAAKKTIHTHHYTVVNAVKASPSWI FT LATAVMPHLWQVVALVLGIVSVYRAEKRVISILFLAAATISGADWVFLASASLQTVPSA FT LIQVACVIISHFDPIGAICVSALAMFGTFLASMCATNTTFVQHSRAASANTAILVLSIV FT LRTLGLPSMPIALALAIVRAYTILTTPLGATIEVRSEDGKVLSKDPLKPGILFRFKQGL FT KKFAQLRTSMPPLVRVNPTAVVRIETPEGIGSGFLCANYIVTAGHVVGQNKVVSICVGS FT AKYQAPVARQLDGKDVALLKIPQQMQGYPRLKIAQKVDPEWICVYSPDDDGAIVQSVVP FT GHQVDECLDYAVPTRNGMSGCPVVNPDGRVMGVHLTNTGFTGGAQIITQADVIDPPKVS FT TNEDKLRQEIDDLKKQLAKCSQSSSQGEVVELVRAAMAREMKILRAELNKEIYTQAKGK FT TKGKKRLRMVGAKTRRQRGPMFTEEEYQALLEKGMTPEEIRDMVERLYEKEAAGFPDWD FT PMDDGYDPDEDWAFESDLNFGQRRVVVSSFNQYLDRDYDAKAVEDMLRSLTHADVEAIG FT PLYPITAKCIGTPLCSAILCLVDRYAVSSGLSAPTQGLPYTQRRLPKNREAGPPTTAPE FT IHQLDSWESLRLPPSRRVVPDDYPVVCNLPINRPIYEDKLADDPLLGLLPPCDPELAFA FT PATWGPQAFTKSFEKFSYAEPSRFWELYPDECAFADLQWRKHYNFLEDTRVVHITATEK FT NVDSTPGYPKCELHDSERDYIERHGWAPYIREFKRVDSGERPRVLWYCFLKKEQLKKEK FT IADGDIRQIICPDVIYSRIGAALEQHQNKLMKQHTDESSGQCGWTPFFGGFARKMRRLD FT KNKVVEFDWTRFDGTIPRTLLKHIKNLRWEKINAEHRKRYQHVHDWYVQNLLHRYVLMP FT TGEVTIQMRGNPSGQISTTMDNNMVNYWLQAFEFAYLNKGKDIHALWDDYDTIVYGDDR FT LTSTPCIPDNYVERVVTMYKEVFGMWVKPEKVKVTDTVVGASFCGFTVGPDYQPIPANP FT EKLWASLVTPCQKLPDEFALYGKLLSFKILMHNSGDHPFKEYVEKCLAALEHGRSLPKI FT TNEQLDRLWRGGPKTNPNG" FT CDS 44..2491 FT /codon_start=1 FT /product="nsp1a" FT /note="non-structural polyprotein; ORF1" FT /db_xref="GOA:F6LD31" FT /db_xref="InterPro:IPR008760" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F6LD31" FT /protein_id="AED89607.1" FT /translation="MSLYINRADEALASHDRAQLKPRFDAREWFDEMRRIAPTVPWYVV FT YKPRSYFYPTRTDVPEPQAVLTASTVCEGEWRTFIMDTQSGRPVMIEVNHILDHQPTIL FT AAALIHDRAEKSKTISELRLDNELLRGQIAFMRQEYATTTPRFTMSWATLFALVFLGFS FT LFWHSAHGLTTTSTTDSVNPMEMLKLNIWLEDFISAAKKTIHTHHYTVVNAVKASPSWI FT LATAVMPHLWQVVALVLGIVSVYRAEKRVISILFLAAATISGADWVFLASASLQTVPSA FT LIQVACVIISHFDPIGAICVSALAMFGTFLASMCATNTTFVQHSRAASANTAILVLSIV FT LRTLGLPSMPIALALAIVRAYTILTTPLGATIEVRSEDGKVLSKDPLKPGILFRFKQGL FT KKFAQLRTSMPPLVRVNPTAVVRIETPEGIGSGFLCANYIVTAGHVVGQNKVVSICVGS FT AKYQAPVARQLDGKDVALLKIPQQMQGYPRLKIAQKVDPEWICVYSPDDDGAIVQSVVP FT GHQVDECLDYAVPTRNGMSGCPVVNPDGRVMGVHLTNTGFTGGAQIITQADVIDPPKVS FT TNEDKLRQEIDDLKKQLAKCSQSSSQGEVVELVRAAMAREMKILRAELNKEIYTQAKGK FT TKGKKRLRMVGAKTRRQRGPMFTEEEYQALLEKGMTPEEIRDMVERLYEKEAAGFPDWD FT PMDDGYDPDEDWAFESDLNFGQRRVVVSSFNQYLDRDYDAKAVEDMLRSLTHADVEAIG FT PLYPITAKCIGTPLCSAILCLVDRYAVSSGLSAPTQGLPYTQRRLPKNGKRGPQQRPQK FT STN" FT misc_feature 2440..2446 FT /note="ribosomal slippage site" FT CDS 3899..6178 FT /codon_start=1 FT /product="capsid protein precursor" FT /note="ORF2" FT /db_xref="InterPro:IPR004337" FT /db_xref="UniProtKB/TrEMBL:F6LD32" FT /protein_id="AED89609.1" FT /translation="MSSWIVFGGEDQRQILMASRSQNRRAARTTTSIVVRNGPAATQGG FT GGQPRQQQQQRRRRRRARQTTQMVRVLPVKNQSRRRGFRPSGVGNRVVYQKIVTTLGTV FT GSNGSGNLETELAVLLNPSTMKEATGSNTYGPLQIYASTYSLFQMRSLKLHLKPLVGAS FT AVSGTAVRMSWNPTNNPTQTSWSALGARKHSDTTPGKDGFFRLTNRDLRGPKDGWFKTN FT TKGDPMMSFAGSLEIHTLGETRSTYQNGQYTGGLFLAELETNWAFKDYAQQPGFLNLVK FT GDSEAGAQITTDASGKILMQVPQNTRLARAASTTTAAEIIWMVTDAIIQAGTAAFPQPF FT QWLFRGGWWFIKKIAGAPVRSGYDTFEVYSSITDARSGAACVADQVAQTPVSVGSLHYQ FT QITPGNTGITTGIQRAVEAPEQPLVVTNSWRLPFNSDVERPGFDHWYHNSDGGQNPETG FT ACVMADGRVRATFSVLRVQLFGSPDPDRFENKVPVYLRVSSSSSPLVGFAVAYHRAALT FT GTTNQFQVDTLLVYATNTDGANFERRWKGTRVQYPGTDGNLHIDTPVDGTQGRVRIQFR FT SGSWYILQFVTYGRPTAVLTAAGIEIINITTGPFTSGNHTLPVAGTEDPGIVPVYGAGM FT VFTPLPSGELNYRELPSPQVLDEDVYHDMPPLEDGDSDDDEDDPALEMEPGDDYDVPPL FT SRCVVHPSVQGTYELLLGTHPERDARLAVNQLHPSDEYKEFTTLYHDALVDGLSPKEAR FT AFALGL" XX SQ Sequence 6253 BP; 1513 A; 1700 C; 1657 G; 1383 T; 0 other; ccaaaacagt tcagatagat tggatattgc taggtctgtg agtatgtctc tctacatcaa 60 ccgtgctgac gaggcccttg cctcacacga tcgtgcccag ctcaaacctc ggtttgatgc 120 acgtgagtgg ttcgatgaga tgcggcgcat tgcgccgaca gtcccatggt acgtcgttta 180 caaaccgcgg tcgtactttt acccaacccg cacagacgta cccgagccac aagctgtgct 240 cactgcaagc actgtctgcg agggtgagtg gcgcaccttc atcatggaca cacaaagcgg 300 acgtccagtg atgattgagg tcaatcacat tcttgaccat cagcccacca ttcttgcggc 360 ggcgctcata catgacagag ctgagaaatc caagaccatt tctgaactgc gcctggataa 420 cgaactgttg cgtggacaaa tagcgtttat gaggcaggag tatgccacaa ctacaccccg 480 gttcacgatg agctgggcaa cgctattcgc actcgttttc cttggctttt ctcttttttg 540 gcactctgcg catggcctca ccacaacatc aacaactgat tcagtcaacc ccatggagat 600 gctaaagctg aacatttggc ttgaagattt catctcagct gccaaaaaga caattcacac 660 ccaccactac accgtagtga acgctgtgaa ggcctcgcca tcctggattt tggccacggc 720 agtcatgccg cacctttggc aggttgtcgc cctggttctg gggatcgtct ctgtatacag 780 agcggagaaa cgagtgatct caatactctt ccttgcagcc gcaaccatta gcggggcgga 840 ctgggttttc cttgcgagcg catccctgca aaccgtgccc agtgctttaa ttcaggttgc 900 gtgcgtgata atatcgcatt ttgaccccat tggggccatt tgcgtgtctg cgctcgccat 960 gtttgggact ttcctagcca gcatgtgtgc cacaaacaca acctttgtgc aacactctcg 1020 ggctgcctct gcaaacacag cgatcctcgt gctttccatt gtgctgcgga cgcttggact 1080 tccatcaatg cccatagcat tggcgcttgc cattgtgcgt gcctacacaa ttttaacaac 1140 tcctcttggt gcaacgattg aggttcgcag tgaggatggc aaagtgctct ccaaggaccc 1200 actgaagccc ggcatccttt tccgctttaa acagggcttg aagaagtttg cccagctgcg 1260 gacgtccatg ccgcctcttg tgcgcgtgaa ccccacagcg gtggtcagga ttgagacccc 1320 tgaaggcatc gggtctggct tcctatgtgc caactacatc gtgacagccg gtcacgttgt 1380 tggccaaaac aaggttgtct ccatctgtgt tgggtcggct aagtaccaag cccctgtggc 1440 caggcaattg gatggtaaag atgtggcact cttgaaaata ccacagcaga tgcaagggta 1500 cccccgactg aaaattgccc agaaggtgga ccccgagtgg atctgtgtct actcacctga 1560 tgacgacgga gcgattgtgc aatcagttgt ccccggccac caggttgatg agtgccttga 1620 ttatgctgtc cccacccgta acggtatgtc aggttgtcca gttgtcaacc ctgacgggcg 1680 agtgatgggg gtccacctca ccaacaccgg gtttacgggc ggggcccaaa tcatcaccca 1740 ggccgatgtt attgaccctc ctaaagtgag caccaatgag gataagctta ggcaggaaat 1800 tgatgacctg aagaagcagc tagccaagtg ttcccagtcc agtagccagg gcgaggttgt 1860 tgagcttgtc cgtgctgcca tggcacggga gatgaagatc ttaagggccg agctcaacaa 1920 ggagatctac acccaggcga aaggcaaaac caagggcaag aagaggctca ggatggttgg 1980 tgcaaagacc aggcggcagc gagggcccat gtttacagag gaggaatatc aggctcttct 2040 ggaaaaaggg atgaccccag aggagatccg ggacatggta gagcgtcttt acgagaaaga 2100 agctgccggc tttccagact gggatcccat ggatgatggg tatgacccag atgaagattg 2160 ggcttttgag tcagacctca attttggaca acggcgcgtt gtcgtgagtt ccttcaacca 2220 atatcttgac agggactacg acgcaaaggc ggttgaagac atgcttcgct cattaacgca 2280 tgctgatgtt gaagccatag ggccattata cccaatcacc gccaagtgca tcggtacgcc 2340 cttatgttct gcgatcctct gccttgtgga ccgctacgcg gtcagcagtg gcctatcggc 2400 accaacacag ggtctgcctt acacgcagcg ccgcctgcca aaaaacggga agcggggccc 2460 ccaacaacgg ccccagaaat ccaccaatta gattcctggg aatcactccg cctcccacca 2520 tcgaggcgtg tggtgccaga cgattatccg gtagtgtgta acctgcccat taatagaccc 2580 atttatgaag acaaacttgc tgatgatccg cttcttggct tgctaccacc gtgtgaccca 2640 gagcttgcat ttgcacccgc cacatggggt ccacaggctt tcaccaagtc ttttgaaaaa 2700 ttcagttatg cagagccatc ccgcttttgg gagctttatc ctgatgagtg tgctttcgca 2760 gatctccaat ggcggaagca ctacaatttc cttgaggata cgcgtgtggt acacatcacc 2820 gcgacggaga agaatgtaga ctcaacacca ggatacccca agtgcgaatt gcatgacagt 2880 gagcgcgact acatcgagcg ccacgggtgg gctccgtaca tacgtgagtt caagagagtt 2940 gactctggtg agcggccgcg cgtcctgtgg tattgcttct taaagaaaga acaactgaag 3000 aaagagaaaa tcgcggacgg agacatccgc cagatcatat gccccgatgt gatttactct 3060 cgcatcggcg cagctcttga gcagcatcaa aataagctta tgaagcagca cacagatgaa 3120 agcagtggcc agtgtggctg gacccctttc tttggtgggt ttgcaagaaa aatgaggcga 3180 ctcgacaaga ataaagtcgt cgagtttgac tggaccaggt ttgatggaac gatcccgcgc 3240 accctcctga agcacattaa aaaccttagg tgggagaaga tcaacgctga acataggaag 3300 cgctaccagc acgtacatga ctggtatgtg cagaatctac tccaccgcta cgtgctcatg 3360 ccaactgggg aagtcaccat tcaaatgcgt ggtaacccct caggccaaat ttccaccact 3420 atggacaaca acatggtcaa ctattggctc caagcttttg agtttgccta cctcaacaag 3480 ggcaaggaca tacatgccct ctgggacgac tatgacacca tagtgtatgg ggacgacaga 3540 cttacatcca ccccatgcat cccagacaac tatgttgagc gtgttgtaac catgtacaag 3600 gaggtgtttg gcatgtgggt taagcctgag aaggtaaaag tcacagacac agttgttgga 3660 gcctcatttt gtggcttcac cgtggggcca gactatcaac caataccagc taatcctgag 3720 aagctctggg ccagcctagt tacaccctgt caaaagttac cagatgaatt tgccctctat 3780 gggaagctcc ttagttttaa gatcctgatg cacaacagcg gggaccatcc tttcaaagaa 3840 tatgtggaaa agtgcctcgc agcgctggag catggccgct ccttgcctaa aataaccaat 3900 gagcagctgg atcgtctttg gaggggagga ccaaagacaa atcctaatgg ctagtcgttc 3960 tcagaacagg cgtgccgcgc gcactacaac cagcattgtg gtgcgcaatg gaccagctgc 4020 cacccaaggt gggggcggcc aaccaagaca acaacagcag cagcgccgta gacggcgcag 4080 ggcaaggcag acaacccaga tggtgcgggt gctacccgtc aaaaatcaga gtcgcaggcg 4140 ggggtttcgg ccttcggggg tcggtaaccg tgtggtttac cagaagattg tcacaactct 4200 cggcacggta gggtcgaacg gatctgggaa cctggagacc gaactggcag tgttgctgaa 4260 cccctcaaca atgaaagaag caacaggatc taatacatac gggccgcttc agatttatgc 4320 ctcaacatac tctctcttcc aaatgaggtc gctgaaactt cacctcaaac ctcttgtcgg 4380 cgcctccgcg gtttcaggta cagcagtccg gatgtcgtgg aatccgacca acaaccccac 4440 ccaaacatcg tggtcggctt tgggcgcacg gaaacattcg gacaccacac cgggcaagga 4500 tgggttcttc aggctaacga accgcgacct gcgtggtcca aaggatggct ggtttaagac 4560 caacaccaag ggcgacccca tgatgtcatt tgctggttcc cttgaaatcc acacactggg 4620 tgagacaagg tcaacgtacc agaatggcca atacaccggt ggtctcttcc tggcagagct 4680 cgagaccaac tgggctttca aggactacgc ccaacagccc gggttcctca atcttgtgaa 4740 gggcgacagc gaggccgggg cccaaataac aaccgacgca tccggaaaga ttctgatgca 4800 agtgccccaa aacacccgcc ttgcgcgcgc cgcctccaca accaccgcag cagaaatcat 4860 ctggatggtg acggacgcaa taattcaagc cggcacggct gcattcccac aaccttttca 4920 gtggttgttc cgcggcggtt ggtggtttat aaagaagatt gcgggagcgc ccgtgaggtc 4980 tgggtatgac acctttgagg tgtattcgtc catcactgat gcaagatccg gtgccgcctg 5040 tgtcgccgat caagtggcac agacccccgt ctccgttggc tccctccact atcagcagat 5100 cacccctggc aataccggta tcacgaccgg gatccagcgc gcagtagagg caccagagca 5160 accgctcgtc gtgactaact cctggcgctt gcccttcaac tccgacgtgg agaggcccgg 5220 ttttgaccac tggtaccaca atagtgacgg gggccagaat cccgagacgg gtgcctgcgt 5280 catggctgac ggccgagtcc gcgccacgtt tagcgtcctc agagtgcaac tctttggtag 5340 ccctgatcca gacaggtttg agaacaaggt cccagtttat ctcagagttt cctcaagttc 5400 atcgcctctc gttggctttg cagtcgctta ccatcgcgct gcacttactg gaaccaccaa 5460 ccagttccag gttgacacat tgttggtcta tgccaccaac accgacggtg ccaatttcga 5520 gcggaggtgg aaggggacca gggtccagta ccctggaacc gacggcaact tgcacattga 5580 cactcctgtt gatggaacgc aaggccgagt gaggatacag ttccgaagtg ggagttggta 5640 tatactccaa tttgtcacat acggccgacc aaccgccgtc ttaacagcag ctgggattga 5700 gataataaac ataaccactg ggcccttcac gtctgggaac cacactctcc ctgtggcggg 5760 caccgaggat cctgggatag tgccggtgta tggcgcgggg atggtcttca cgcccctccc 5820 aagcggtgag ctcaactatc gtgagctccc tagcccacag gttctggatg aggatgtgta 5880 tcatgacatg ccaccgctcg aggatggaga tagtgatgat gatgaagatg acccggctct 5940 tgagatggaa ccaggtgatg actatgatgt gccaccgttg tcccgctgtg tggtgcatcc 6000 ctcagttcag gggacctatg agcttttgct cgggacccat ccagagcggg atgcccgctt 6060 ggcagtgaat cagctgcatc caagcgatga gtacaaggag ttcaccacct tgtaccatga 6120 cgcattagtt gatggcctat cacctaagga agcgagggct tttgcccttg gtctttagga 6180 tggcgcgtgc gtcatgcttt ttcttaatca tttttcagtt tcatttgtga tttgattagc 6240 ataggtgaag ggg 6253 //