ID HQ916314; SV 1; linear; genomic RNA; STD; VRL; 6317 BP. XX AC HQ916314; XX DT 18-MAY-2011 (Rel. 108, Created) DT 26-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Bovine astrovirus B170/HK, complete genome. XX KW . XX OS Bovine astrovirus B170/HK OC Viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; OC Mamastrovirus; unclassified Mamastrovirus. XX RN [1] RP 1-6317 RX DOI; 10.1099/vir.0.030817-0. RX PUBMED; 21508185. RA Tse H., Chan W.M., Tsoi H.W., Fan R.Y., Lau C.C., Lau S.K., Woo P.C., RA Yuen K.Y.; RT "Rediscovery and genomic characterization of bovine astroviruses"; RL J. Gen. Virol. 92(Pt 8):1888-1898(2011). XX RN [2] RP 1-6317 RA Tse H., Chan W.-M., Tsoi H.-W., Woo P.C.Y., Lau S.K.P., Yuen K.-Y.; RT ; RL Submitted (22-JAN-2011) to the INSDC. RL Microbiology, The University of Hong Kong, Pokfulam Road, Hong Kong, China XX FH Key Location/Qualifiers FH FT source 1..6317 FT /organism="Bovine astrovirus B170/HK" FT /host="cattle" FT /strain="B170/HK" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /db_xref="taxon:1027244" FT CDS join(23..2425,2425..3933) FT /codon_start=1 FT /ribosomal_slippage FT /product="nsp1ab" FT /note="non-structural polyprotein" FT /db_xref="GOA:F6LD24" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008760" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F6LD24" FT /protein_id="AED89602.1" FT /translation="MSRYINRADEALASHDRAQLKPRFDAREWFDEMRRIAPTVPWYVV FT YKPRSYFYPTRTDVPEPQAVLTASTVCEGEWRTFIMDTQSGRPVMIEVNHILDHQPTIL FT AAALIHDRAEKSKTISELRLDNELLRGQIAFMRQEYATTTPRFTMSWATLFALVFLGFS FT LFWHSAHGLTTTSTTDSVNPMEMLKLNIWLEDFISAAKRTIHTHHCTVVNAVKASPSWI FT LATAVMPYLWQVVALVLGVVSVYRAERRVISILFLAAATISGADWVFLASASLQTVPSA FT LIQVACVIISHFDPIGAICVSALAMFGTFLASMCATNTTFVQHSRAASANTAILVLSIV FT LRTLGLPSMPIALALAIVRAYTILTTPLGATIEVRSEDGKVLSKDPLKPGILFRFKQGL FT KKFAQLRTSMPPLVRVNPTAVVRIETPEGVGSGFLCANYIVTAGHVVGQNKVVSICVGS FT AKYQAPVARQLDGKDVALLKIPQQMQGYPRLKIAQKVDPEWICVYSPDDDGAIVQSVVP FT GHQVDECLDYAVPTRNGMSGCPVVNPDGRVMGVHLTNTGFTGGAQIITQADVIDPPKVS FT TNEDKLRQEIDDLKRQLAKCSQSSSQNEVVELVRAAMAREMKILRAELNKEIYTQAKGK FT TKGKKRLRMVGAKTRRQRGPMFTEEEYQALLEKGMTPEEIRDMVERLYEKEAAGFPDWD FT PMDDGYDPDEDWAFESDLNFGQRRVVVSSFNQYLDRDYDAKAVEDMLRSLTHADVEAIG FT PLYPITAKCIGTPLCSAILCLVDRYAVSSGLSAPTQGLPYTQRRLPKNREAGPPTTAPE FT IHQLDSWESLRLPPSRRVVPDDYPVVCNLPINRPIYEDKLADDPLLGLLPPCDPELAFA FT PATWGPQAFTKSFEKFSYAEPSRFWEFYPDECAFADLQWRRHYNFLEDTRVVHITATEK FT NVDSTPGYPKCELHDSERDYIERHGWAPYIREFKRVDSGERPRVLWYCFLKKEQLKKEK FT IADGDIRQIICPDVIYSRIGAALEQHQNKLMKQHTDDSSGQCGWTPFFGGFARKMRRLD FT KNKVVEFDWTRFDGTIPRTLLKHIKNLRWEKINAEHRKRYQHVHDWYVQNLLHRYVLMP FT TGEVTIQKRGNPSGQISTTMDNNMVNYWLQAFEFAYLNKGKDIHALWDDYDTIVYGDDR FT LTSTPCIPDNYVERVVTMYKEVFGMWVKPEKVKVTDTVVGASFCGFTVGPDYQPIPANP FT EKLWASLVTPCQKLPDEFALYGKLLRFKILMHNSGDHPFKEYVEKCLAALEHGRSLPKI FT TNEQLDRLWRGGPKTVPNG" FT CDS 23..2470 FT /codon_start=1 FT /product="nsp1a" FT /note="non-structural polyprotein; ORF1" FT /db_xref="GOA:F6LD25" FT /db_xref="InterPro:IPR008760" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F6LD25" FT /protein_id="AED89601.1" FT /translation="MSRYINRADEALASHDRAQLKPRFDAREWFDEMRRIAPTVPWYVV FT YKPRSYFYPTRTDVPEPQAVLTASTVCEGEWRTFIMDTQSGRPVMIEVNHILDHQPTIL FT AAALIHDRAEKSKTISELRLDNELLRGQIAFMRQEYATTTPRFTMSWATLFALVFLGFS FT LFWHSAHGLTTTSTTDSVNPMEMLKLNIWLEDFISAAKRTIHTHHCTVVNAVKASPSWI FT LATAVMPYLWQVVALVLGVVSVYRAERRVISILFLAAATISGADWVFLASASLQTVPSA FT LIQVACVIISHFDPIGAICVSALAMFGTFLASMCATNTTFVQHSRAASANTAILVLSIV FT LRTLGLPSMPIALALAIVRAYTILTTPLGATIEVRSEDGKVLSKDPLKPGILFRFKQGL FT KKFAQLRTSMPPLVRVNPTAVVRIETPEGVGSGFLCANYIVTAGHVVGQNKVVSICVGS FT AKYQAPVARQLDGKDVALLKIPQQMQGYPRLKIAQKVDPEWICVYSPDDDGAIVQSVVP FT GHQVDECLDYAVPTRNGMSGCPVVNPDGRVMGVHLTNTGFTGGAQIITQADVIDPPKVS FT TNEDKLRQEIDDLKRQLAKCSQSSSQNEVVELVRAAMAREMKILRAELNKEIYTQAKGK FT TKGKKRLRMVGAKTRRQRGPMFTEEEYQALLEKGMTPEEIRDMVERLYEKEAAGFPDWD FT PMDDGYDPDEDWAFESDLNFGQRRVVVSSFNQYLDRDYDAKAVEDMLRSLTHADVEAIG FT PLYPITAKCIGTPLCSAILCLVDRYAVSSGLSAPTQGLPYTQRRLPKNGKRGPQQRPQK FT STN" FT misc_feature 2419..2425 FT /note="ribosomal slippage site" FT CDS 3878..6235 FT /codon_start=1 FT /product="capsid protein precursor" FT /note="ORF2" FT /db_xref="InterPro:IPR004337" FT /db_xref="UniProtKB/TrEMBL:F6LD26" FT /protein_id="AED89603.1" FT /translation="MSSWIVFGGEDQRQFLMASRSQNRRAARTTTNIVVRNGPAATQGG FT GGQSRQQQQQRRRRRRTRPQAQIVRVLPNKTQGRRRGARLPRFNNRVVVQKIVTTLGTV FT GSNGSGSVETEMAVLLNPSTMKEATGSNSYGPLQVYASTYTLFSMRSLRLHLKPLVGSS FT AVSGTAVRMSWNPTSSPTQTSWSALGARKHSDATPGKDGRFTLTARDLRGPKDGWYKTN FT TKGDPMLSFAGSLEIHTLGETRSTYQNGRFEGGLFLAELETVWAFKDYSQQPGLMNLIK FT GESTGDATITTDNTGKLILTTPGTSALARAASTTTASEIIWMVTDAIIQAGASAFPQPF FT GWLIRGGWWFLKRVAGAPVRAGSEQFEIYASINDARASVPCIANTANAQPINIGQLHFQ FT QVTPGNTGISTDIPQVRDLGDPFYAMDQVFTPTSSRRLKFNTRDQYVPGFDVWYHIQDG FT TQNPQTGVAFVADGVIRASFNIIEVFFDTPPSVDLFRHKIPIYIRVNGNGNGVLSGVAV FT AHTTSTLQNNTTWRVDTFLVHATRSEGASFTQNWKGSQMKYPVDDTYNAQFITPTNSAS FT GFVRAQFEQGGWYAVQYTCYSTSAYPIARHFVCGGEVVGVEPAQPIHSGTQTFPVMGFD FT GDSSVVPVYGAGFAFKPFRDGEINVANGPVPQTAYTTLPAGEAEGYDDDPADEDDDFAD FT PEDEDDGLTDRDLELHPSDGYDVPPLSRCVVHLDVRDVYESLLKTHPERDARLAVNQLK FT PSDEYSKFTRLYHDALVDGLSPRSARAYAMGL" XX SQ Sequence 6317 BP; 1540 A; 1716 C; 1654 G; 1407 T; 0 other; ggatattgct aggtctgtga gtatgtctcg ctacatcaat cgtgctgacg aggccctcgc 60 ctcacacgat cgtgcccagc tcaaacctcg gtttgatgca cgtgagtggt tcgatgagat 120 gcggcgcatt gcgccgacag tcccatggta cgtcgtttac aaaccgcggt cgtacttcta 180 cccaacccgc acagacgtac ccgagccaca agctgtgctc actgcaagca ctgtctgcga 240 gggtgagtgg cgcaccttca tcatggacac acaaagcgga cgtccagtga tgattgaggt 300 caatcacatt cttgaccatc agcccaccat tcttgcggcg gcgctcatac atgacagagc 360 tgagaaatcc aagaccattt ctgaactgcg cctggataac gaattgttgc gtggacaaat 420 agcatttatg aggcaggagt atgccacaac tacaccccgg ttcacgatga gctgggcaac 480 gctattcgca ctcgttttcc ttggcttttc tcttttttgg cactctgcgc atggccttac 540 cacaacatca acaactgatt cagtcaaccc catggagatg ctaaagctga acatttggct 600 tgaagatttc atctcagctg ccaaaaggac aattcacacc caccactgca ccgtagtgaa 660 cgctgtgaag gcctcgccat cctggatttt ggccacggca gtcatgccgt acctttggca 720 ggttgtcgcc ctggttctgg gggtcgtctc tgtatacaga gcggagcgac gggtgatctc 780 aatactcttc cttgcagccg caaccatcag cggggcggac tgggttttcc ttgcgagcgc 840 gtccctgcaa accgtgccca gtgctttaat tcaggttgcg tgcgtgataa tatcgcattt 900 tgaccccatc ggggccattt gcgtgtctgc gctcgccatg tttgggactt tcctagctag 960 catgtgtgcc acaaacacaa cctttgtgca acactctcgg gctgcctctg caaacacagc 1020 gatcctcgta ctctccattg tgctgcggac gcttggactt ccatcaatgc ccatagcatt 1080 ggcgcttgcc attgtgcgcg cctacacaat tttaacaact cctcttggtg caacgattga 1140 ggttcgcagt gaggatggca aagtgctctc caaggaccca ctgaagcccg gcatcctttt 1200 ccgctttaag cagggcttga agaagtttgc ccagctgcgg acgtccatgc cgcctcttgt 1260 gcgcgtgaac cccacagcgg tggtcaggat tgagacccct gaaggtgtcg ggtctggctt 1320 cctatgtgcc aactacatcg tgacagccgg ccacgttgtt ggccaaaaca aggttgtctc 1380 catctgtgtc gggtcggcta aataccaagc ccctgtagcc aggcaattgg atggtaaaga 1440 tgtggcactc ttgaaaatac cccagcagat gcaagggtac ccccggctga aaatcgccca 1500 gaaggtggac cccgagtgga tctgtgtcta ctcacctgat gacgacggag caattgtgca 1560 atcagttgtc cccggccacc aggttgatga gtgccttgat tatgctgtcc ccacccgcaa 1620 cggtatgtca ggctgtccag ttgtcaaccc tgacgggcga gtgatggggg tccacctcac 1680 taacaccggg tttacgggcg gggcccaaat tatcacccag gccgatgtta ttgaccctcc 1740 taaagtgagc accaatgaag ataagcttag gcaggaaatt gatgacttga agaggcagct 1800 agccaagtgt tcccagtcca gtagccagaa tgaggttgtt gagcttgtcc gtgctgccat 1860 ggcacgggag atgaagatct taagggccga gctcaacaag gagatctaca ctcaggcgaa 1920 aggcaaaacc aagggcaaga agaggctcag gatggttggt gcaaagacca ggcggcagcg 1980 aggacccatg tttacagagg aggaatacca ggctcttctg gaaaaaggga tgaccccaga 2040 ggagatccgg gacatggtag agcgtcttta cgagaaagaa gctgccggct tcccagactg 2100 ggatcccatg gatgatgggt atgacccaga tgaggattgg gcttttgagt cagatctcaa 2160 ttttggacaa cggcgcgttg ttgtgagttc cttcaaccaa tatcttgaca gggactacga 2220 cgcaaaggcg gttgaagata tgcttcgctc attaacgcat gctgatgttg aagccatagg 2280 gccattatac ccaatcaccg ccaaatgcat cggtacgccc ttgtgttctg cgatcctctg 2340 ccttgtggac cgctacgcgg tcagcagtgg tttatcggca ccaacacagg gtctgcctta 2400 cacgcagcgc cgcctgccaa aaaacgggaa gcggggcccc caacaacggc cccagaaatc 2460 caccaattag attcctggga atcactccgc ctcccaccat cgaggcgtgt ggtgccggac 2520 gattatccgg tagtgtgtaa tctgcccatt aatagaccca tttatgaaga caaacttgct 2580 gatgatccgc ttcttggctt actaccaccg tgtgacccag agctcgcatt tgcacccgcc 2640 acatggggtc cacaggcctt caccaagtct tttgaaaaat tcagttacgc agagccatcc 2700 cgcttttggg agttttatcc tgatgagtgt gctttcgcag acctccagtg gcggaggcac 2760 tacaatttcc ttgaggatac gcgtgtggta cacatcaccg cgacggagaa gaatgtagac 2820 tcaacaccag gataccccaa gtgcgaattg catgacagtg agcgcgacta catcgagcgc 2880 cacggatggg ctccgtacat acgtgagttc aagagagttg actctggtga gcggccgcgc 2940 gtcctgtggt attgcttcct aaagaaagaa caactgaaga aagagaaaat cgcggacgga 3000 gacatccgcc agatcatatg ccccgatgtg atttactctc gcatcggcgc agctcttgag 3060 caacaccaaa ataagcttat gaagcagcac acagacgaca gcagtggcca gtgtggctgg 3120 acccctttct ttggtgggtt tgcaagaaaa atgaggcgac tcgacaagaa taaagtcgtc 3180 gagtttgact ggaccaggtt tgatggaacg attccgcgca cccttctgaa gcacatcaaa 3240 aaccttaggt gggagaagat caacgctgaa cataggaagc gttaccagca cgtacatgat 3300 tggtacgtgc agaatctact ccaccgctac gtgctcatgc caactggaga agtcactatt 3360 caaaagcgcg gtaacccctc aggccaaatt tccaccacta tggacaacaa catggtcaac 3420 tattggctcc aagcttttga gtttgcctac ctcaacaagg gcaaggacat acatgccctc 3480 tgggacgact atgacaccat agtgtacggg gacgacagac ttacatccac cccatgcatc 3540 ccagacaact atgttgagcg tgttgtaacc atgtacaagg aggtgtttgg catgtgggtt 3600 aagcctgaga aggttaaagt cacagacaca gttgttggag cctcattttg tggcttcacc 3660 gtggggccag actatcaacc aataccagcc aatcccgaga agctctgggc cagcctagtc 3720 acaccctgtc aaaagttacc agatgaattt gccctctatg ggaagctcct taggtttaag 3780 atcctgatgc ataacagcgg ggaccatcct ttcaaggaat atgtggaaaa gtgcctcgca 3840 gcgctggagc atggccgctc cttgcctaaa ataaccaatg agcagctgga tcgtctttgg 3900 aggggaggac caaagacagt tcctaatggc tagtcgttct cagaacaggc gtgccgcgcg 3960 cactacaacc aacattgtgg tgcgcaatgg accagctgcc acccaaggtg gaggcggcca 4020 gtcaagacag caacaacagc agcgtcgtcg acggcgcaga acaagaccac aggcccagat 4080 cgtgcgggtg cttcccaaca aaactcaggg tcgcaggcgg ggggctaggc ttccacggtt 4140 caataaccgt gtggtggtcc agaagattgt cacaactctc ggtacggtcg gctccaatgg 4200 ctcaggctca gtagaaacgg agatggctgt gctccttaac cctagcacca tgaaagaggc 4260 aacgggcagc aacagctatg ggcccctaca agtttacgct tccacataca cgctattttc 4320 catgaggtca ctgcggttgc acctaaaacc tttggtgggt tcatcggcag tttcgggcac 4380 agcagtccga atgtcatgga atccaacaag cagcccaact caaacctcgt ggtccgccct 4440 tggggctcgg aagcacagtg atgccacacc tgggaaggat ggccgcttta cactcacggc 4500 ccgtgacttg cgtggtccaa aagatggttg gtataagacc aacaccaaag gcgacccaat 4560 gctctcgttt gccggctcgc tagaaatcca cacacttggt gaaacacgca gcacctacca 4620 gaatgggcgc ttcgaaggcg ggctattcct tgctgagctt gagacagtct gggccttcaa 4680 agattatagc caacaacctg gcctcatgaa cctcatcaaa ggggagagca caggagatgc 4740 cacaatcact actgacaaca ctgggaagct tatccttaca acacctggca ccagtgcctt 4800 ggcgcgggca gcgtcaacca cgacagcaag tgaaatcata tggatggtta cggacgctat 4860 aatacaagca ggtgcgtccg cgttccccca gcccttcggg tggctaatca ggggtggctg 4920 gtggtttctc aaacgggtcg ctggtgcccc agtgcgcgcc gggagcgaac agtttgagat 4980 ctatgcatcc ataaatgacg cccgagcctc cgttccttgc atcgcaaaca ccgcgaatgc 5040 gcaaccaata aatattggtc agctccactt ccagcaagtc acaccaggca acaccggcat 5100 ttccacagac attccccagg ttcgtgactt gggagaccct ttctacgcga tggaccaagt 5160 gttcacacca accagctccc gtcgcttaaa gttcaacacc agagaccagt atgtcccagg 5220 gtttgatgta tggtatcata tacaggatgg gacgcagaac ccccaaactg gtgtcgcttt 5280 tgtggcagat ggtgtgatca gggcctcctt caacatcatt gaggtgtttt tcgacacacc 5340 acccagtgtc gatctcttcc gccataaaat acccatctac atcagggtca atggtaatgg 5400 caacggggtg ctctctggtg tggcagttgc ccacacaaca tcaacacttc agaacaacac 5460 gacgtggaga gtggacacat ttttagtgca tgcaacaagg tctgaagggg ccagctttac 5520 ccagaattgg aaggggtctc agatgaaata tcctgtggat gacacgtata atgcacagtt 5580 catcacgcct accaactcgg cgtcaggctt tgtcagggcc cagtttgagc aaggcgggtg 5640 gtatgcagtg cagtacacct gctactcaac ttcagcatac cccatagccc gccacttcgt 5700 ctgcggtggt gaagtggttg gcgtggagcc agcgcagccc attcattcgg gcacccagac 5760 cttccccgtc atgggctttg atggggactc ttcagttgtt ccagtgtatg gtgcgggctt 5820 tgccttcaag ccattccgcg atggtgagat caacgtcgct aatggcccag tcccccagac 5880 agcctacacc acattgcctg caggggaagc cgagggctat gatgatgacc ctgctgatga 5940 ggatgatgat ttcgctgacc cagaagatga ggacgacggt ctgaccgacc gcgacctgga 6000 attgcatccc tctgatggtt atgatgtgcc accgctttcc cgctgcgtgg tgcatcttga 6060 tgttcgagat gtctatgagt ctcttctcaa gacacatcca gagcgggacg cccgcttggc 6120 agtgaatcag ctgaaaccaa gcgatgagta cagcaagttc accaggctgt accacgacgc 6180 attagttgat ggcctatcac ctaggagcgc cagggcttac gccatggggc tctaggatgg 6240 cacatgcgtc gtgttctttt ttctttccta atcatttttc agtttcattt gtgatttggt 6300 aagcataggt gaagggg 6317 //