ID HQ916313; SV 1; linear; genomic RNA; STD; VRL; 6300 BP. XX AC HQ916313; XX DT 18-MAY-2011 (Rel. 108, Created) DT 26-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Bovine astrovirus B18/HK, complete genome. XX KW . XX OS Bovine astrovirus B18/HK OC Viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; OC Mamastrovirus; unclassified Mamastrovirus. XX RN [1] RP 1-6300 RX DOI; 10.1099/vir.0.030817-0. RX PUBMED; 21508185. RA Tse H., Chan W.M., Tsoi H.W., Fan R.Y., Lau C.C., Lau S.K., Woo P.C., RA Yuen K.Y.; RT "Rediscovery and genomic characterization of bovine astroviruses"; RL J. Gen. Virol. 92(Pt 8):1888-1898(2011). XX RN [2] RP 1-6300 RA Tse H., Chan W.-M., Tsoi H.-W., Woo P.C.Y., Lau S.K.P., Yuen K.-Y.; RT ; RL Submitted (22-JAN-2011) to the INSDC. RL Microbiology, The University of Hong Kong, Pokfulam Road, Hong Kong, China XX FH Key Location/Qualifiers FH FT source 1..6300 FT /organism="Bovine astrovirus B18/HK" FT /host="cattle" FT /strain="B18/HK" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /db_xref="taxon:1027245" FT CDS join(47..2455,2455..3963) FT /codon_start=1 FT /ribosomal_slippage FT /product="nsp1ab" FT /note="non-structural polyprotein" FT /db_xref="GOA:F6LD21" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F6LD21" FT /protein_id="AED89599.1" FT /translation="MSLYINRADEALASNDGTQVKPRFDAREWFDELRRIAPTVPWYIT FT YQPRMYFYPTLIPDRILTASTVCEGEWRTFVLDMEHGLHKAIEVNHIPDHQPTILTAAL FT LHDRSEKAREISDLKLETEILRGQLAFARQEYKSVPQFKMSWTTIFALVFLGFSLFWHS FT AHGLTTTSTTDSVDPMGMLKLNIWLENFVSEAKHVIHTHRTTVMDALRSSPSWLIASTL FT VPHLWTIVTIVLGVISVYKSERRVLSICFLAAATLSGSDWLFLSSASAQTAVSAVSQIA FT CVLVSHVDPLGAICLSSLMMFGTFLASMCCTNTEFIQQSRAASINTAILVASIVLRTMQ FT LPAMPIAIALAAVRAYTIITTPMGATIEVRSEDGKVMSKDPVKPGILFRFRQGLRKRFA FT QLRSTMPPLVRVNPTAVVRIETPDGIGTGFFCANYIVTAGHVLGPHKVASICVGVAKYQ FT TSVVRHIEGKDIALLKIPQQIQNFPRLKIAPKIETDWVCVYSPDGEGAIIQSVVPGHQV FT DDCIDYATPTRDGMSGAPLVNPDGRVMAVHLTNTGFTGGAQILTQADVTDPPKSTGNED FT KLKQEIEDLKRQLAKCNQSSTQEDIVNLVRVAMAREMKILREELNKELKAVPQYDQAKG FT KTKMKAGRLRMAGSKPRRQRGPVFTEEEYNRLLESGLTPDEIRDMVDRLYDKEVAGFPD FT WDPMDDGYDPNEDWTFESDSNFGQKQVKVPSFNQYMERDYDVKDVENMLRSLTCADVEA FT IGPLYPITAHCIGSPLCPALLCLVDRYAASRGLSPPSFGLPYTQRRVPKNREAGPTTAA FT PEIHKLDAWETLRLPPSRRVVPDDYPVVCNLPINRPIYEEKLVDDPLLGLLPPCDPDLP FT FAPAVWGPQAYTKSFEKFTYAEPSRFWELYPDECAFADKQWRKHYNFLEDTRVMHITAT FT EKNIDSTPGYPKCELHDSERDYLECNGWAPYIREFKRVDSGAQPRVLWYCFLKKEQLKK FT EKIKDGDIRQIICPDAIYSRIGAALEQHQNNLMKKNTDTSSGQCGWTPFFGGFADKMRR FT LDRNKIIEFDWTRFDGTIPRTLLKHIKDLRWEKINKQHRERYKHVHDWYVHNLLTRYVL FT MPTGEVTIQRRGNPSGQISTTMDNNMVNYWLQAFEFAFLNKGKDIETLWNDYDTIVYGD FT DRLTSSPSVPDNYVPRVVAMYKDVFGMWVKPEKVKVTDTIIGASFCGFTVGKNYQPVPS FT NPEKLWASLVTPCQKLPDEFALYGKLLSFKILMHNSEDHPFKDYIDKCIAALEHGRSLP FT KITDEQLDHLWRGGPKTNPNG" FT CDS 47..2500 FT /codon_start=1 FT /product="nsp1a" FT /note="non-structural polyprotein; ORF1" FT /db_xref="GOA:F6LD22" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F6LD22" FT /protein_id="AED89598.1" FT /translation="MSLYINRADEALASNDGTQVKPRFDAREWFDELRRIAPTVPWYIT FT YQPRMYFYPTLIPDRILTASTVCEGEWRTFVLDMEHGLHKAIEVNHIPDHQPTILTAAL FT LHDRSEKAREISDLKLETEILRGQLAFARQEYKSVPQFKMSWTTIFALVFLGFSLFWHS FT AHGLTTTSTTDSVDPMGMLKLNIWLENFVSEAKHVIHTHRTTVMDALRSSPSWLIASTL FT VPHLWTIVTIVLGVISVYKSERRVLSICFLAAATLSGSDWLFLSSASAQTAVSAVSQIA FT CVLVSHVDPLGAICLSSLMMFGTFLASMCCTNTEFIQQSRAASINTAILVASIVLRTMQ FT LPAMPIAIALAAVRAYTIITTPMGATIEVRSEDGKVMSKDPVKPGILFRFRQGLRKRFA FT QLRSTMPPLVRVNPTAVVRIETPDGIGTGFFCANYIVTAGHVLGPHKVASICVGVAKYQ FT TSVVRHIEGKDIALLKIPQQIQNFPRLKIAPKIETDWVCVYSPDGEGAIIQSVVPGHQV FT DDCIDYATPTRDGMSGAPLVNPDGRVMAVHLTNTGFTGGAQILTQADVTDPPKSTGNED FT KLKQEIEDLKRQLAKCNQSSTQEDIVNLVRVAMAREMKILREELNKELKAVPQYDQAKG FT KTKMKAGRLRMAGSKPRRQRGPVFTEEEYNRLLESGLTPDEIRDMVDRLYDKEVAGFPD FT WDPMDDGYDPNEDWTFESDSNFGQKQVKVPSFNQYMERDYDVKDVENMLRSLTCADVEA FT IGPLYPITAHCIGSPLCPALLCLVDRYAASRGLSPPSFGLPYTQRRVPKNGKRGQQQRP FT QKSTN" FT misc_feature 2449..2455 FT /note="ribosomal slippage site" FT CDS 3908..6226 FT /codon_start=1 FT /product="capsid protein precursor" FT /note="ORF2" FT /db_xref="InterPro:IPR004337" FT /db_xref="UniProtKB/TrEMBL:F6LD23" FT /protein_id="AED89600.1" FT /translation="MSSWIIFGGEDQRQILMASRKQQNRRATRNTTNIVVRNGAAANQA FT GAAGGQRRRRSRRNNKAPQVNVRVLSNQAKVFRKNTRRQGVGNRVVFQKINTTLGTVGS FT NGSEQIECELTCLMNPATMKEATGSNSFGPLGIYASTYSLFRMTRCTVTLKPLVGDSAV FT SGTVARVSWNPTSTPTQTSWSALGARKHVDVTPGKTGRFTLTTRDLVGPKGGWYKTNTK FT GDPMMSFAGTLEVHTLGRTMSTYRNEQFNGGLFLAELETEWQFKDYSQQPGMLNLIKGE FT DTQQSHIQTDANGKIQLVVPNSSRMARAATGAASEIIWLVTDTIIQAGTSVLPPPFSWL FT IRGGWWLVKRAAGAPVRAGQTTFDVYASISDARADMPCISTTTNMNPIQVGGLHFQQVT FT PGNTGISTEAYEARITQQEVTTNTIAVIKALQYVYPASGDTMMPAQSRWFNATAATTQI FT STNGLGFLNGNTRWGTHNVMEVEVNISGGYQQFPNRIPVYLFYNNQQALAGYAVGHQSD FT LHQENPSLRVSSVLFQATSSHAYNFNASWQRATVHYPRSTTNTTEAAVVVEAGGANANL FT RNRVVAGRWYVLQFVSIGIVDKALVAGSAELAYTATGSWQAGTTNFTPSVNDAATGLIP FT TYATGLHFRALDSNTLSESTNYAAPRLELDPDEYYDMPPLEGDGDADDEDEEDGTDADL FT ELGPMDDYDDPPMSRLVVHPDVQKTYEILLELHPEREARLAANRLKPSDEYSEFTRLYH FT DALVDGLSPRAARAHALGL" XX SQ Sequence 6300 BP; 1581 A; 1760 C; 1640 G; 1319 T; 0 other; ccaaaacagg tcggattgaa tttgttgtgt atagagattt acaataatgt ctctttacat 60 caaccgtgct gacgaggccc tagcctccaa tgatgggacc caggtcaagc cgcgttttga 120 tgcgcgcgag tggtttgatg agttgcgcag gatcgcaccc acagtgccgt ggtacattac 180 ctaccagcca cgcatgtact tctacccaac tctcatccca gatcgcattc ttaccgcgag 240 caccgtctgt gaaggcgaat ggcggacttt tgtcctggat atggaacatg gcctccacaa 300 agcgatagag gtcaaccata taccggacca ccaaccaacc atacttactg ccgccctcct 360 tcacgataga tctgagaaag cacgtgagat atccgacttg aaacttgaaa ccgagatcct 420 tcgtgggcag ctggccttcg cgcgtcagga atacaagtca gttccacagt ttaagatgag 480 ctggaccacc atttttgccc ttgtgttcct cggtttctcc ctcttttggc actccgcaca 540 tggcctgacc acgacatcca cgactgactc cgtagacccc atgggcatgc tcaagctgaa 600 catctggctt gagaacttcg tgagtgaggc aaagcatgtc atacacactc accgcaccac 660 ggtcatggac gcgctccggt cttcaccatc atggctcata gcaagcaccc tggttcccca 720 cctgtggacc atagtgacca ttgtgctcgg tgttatatcg gtgtacaaat cagagaggag 780 ggtcctttcc atctgcttcc ttgccgccgc caccctgagt ggtagtgatt ggctcttcct 840 ctcaagtgcg tcggcccaga cagcggtgag cgcagtatca cagatagcgt gtgttttggt 900 ctcccatgtg gaccctcttg gggccatctg tctatcctca ttgatgatgt ttgggacctt 960 tctcgctagc atgtgctgca ccaacacgga gtttatacaa caatccagag ccgcgtccat 1020 caacaccgcc attctcgtcg cctccattgt gctccggacc atgcaacttc cagcgatgcc 1080 gattgcgatc gcgctggcgg cagtccgggc atacaccatc atcacaacac cgatgggggc 1140 aacgattgag gttcggagtg aagacggaaa ggtcatgtct aaggacccgg tgaaacctgg 1200 tatactgttt agatttaggc aggggctgag aaagagattt gctcaactgc ggtcaactat 1260 gcccccactg gtgcgcgtca acccaacagc agtagtccgg attgaaaccc ccgacggaat 1320 cggaacgggt ttcttctgtg ccaactacat cgtcacggcc ggccacgtac ttgggccgca 1380 caaagtggca tctatctgtg ttggtgttgc aaagtaccaa acaagtgtag tgcgccacat 1440 tgaggggaaa gacattgcat tgctgaagat accgcagcag atacaaaact ttccaaggct 1500 caaaatagcc cccaaaattg agacagattg ggtctgcgtt tactcccctg atggggaggg 1560 tgcaatcatc cagtcggttg tgcctggcca ccaggtcgat gactgtatcg actacgctac 1620 accaacccgc gatggcatgt ctggtgcgcc ccttgtcaac ccagatgggc gtgtgatggc 1680 cgtccacctc acaaacacag gtttcactgg tggtgctcaa atcttgaccc aagcggacgt 1740 gactgaccca ccaaaatcca ctggtaacga ggacaaactc aaacaggaga ttgaggattt 1800 gaagaggcag cttgccaaat gcaaccagtc aagcacccag gaggatatcg tcaatcttgt 1860 tagagtggcc atggcccgtg agatgaaaat cttgcgggag gagttgaaca aggagcttaa 1920 ggccgtccct cagtacgacc aggcgaaggg taaaaccaaa atgaaggctg ggagacttcg 1980 catggccggc tccaaacccc gccgccagcg cggccctgtc ttcactgagg aggagtacaa 2040 ccggctcctc gagtctggtc tcacaccaga tgagatccgt gacatggtgg accgactcta 2100 tgataaggaa gtggcagggt tcccagattg ggatccaatg gatgatggct atgaccccaa 2160 tgaggattgg acgttcgaat cagattcaaa tttcgggcag aagcaggtca aagtcccatc 2220 tttcaaccag tacatggaac gagactatga tgtcaaggac gtggagaaca tgctccgttc 2280 gctgacatgt gccgatgttg aagccattgg gccgctgtat cctataaccg cccactgcat 2340 cggctctcct ctgtgccctg cccttctgtg ccttgtcgac aggtatgccg cgtctagggg 2400 attatccccg ccatcatttg gccttcccta cacccagcga cgggtgccaa aaaacgggaa 2460 gcggggccaa caacagcggc cccagaaatc cacaaactag acgcatggga gacgctgcgc 2520 ctcccaccat caaggcgcgt cgtcccagac gactaccctg tcgtctgcaa cctaccgatc 2580 aacaggccca tttatgaaga gaaactggtt gatgacccgc tccttggact tctaccacca 2640 tgcgaccctg acctcccgtt cgcacccgcg gtgtggggac cacaggcata caccaagtcg 2700 tttgagaagt tcacgtacgc tgagccatcc aggttttggg agctctaccc tgatgaatgc 2760 gcttttgctg acaagcagtg gcgcaagcat tacaacttcc ttgaggatac ccgggtgatg 2820 catataacag caactgaaaa gaatatagac tcaacacctg ggtacccgaa gtgtgagctc 2880 cacgacagtg aacgtgatta cctcgaatgc aatgggtggg ccccgtacat acgcgagttc 2940 aagcgcgttg actctggcgc acagccacgt gtcctgtggt actgcttcct gaagaaggaa 3000 cagctcaaga aagagaaaat caaggatggc gacattcgcc agataatatg ccccgatgcg 3060 atatactccc gcatcggtgc cgcccttgag cagcatcaga acaacttgat gaagaagaac 3120 acagacacca gcagcggcca atgtggctgg accccattct ttggagggtt tgcagacaag 3180 atgcgccggt tggacaggaa caagatcata gagtttgact ggacccgctt cgatggcaca 3240 attccacgca cccttctcaa acacatcaaa gacctccggt gggagaaaat caacaaacaa 3300 caccgtgaga ggtataagca tgtacacgat tggtacgtcc acaaccttct caccaggtat 3360 gtgcttatgc ccaccgggga ggtcacaatc cagcgcaggg gcaacccgtc gggacagatt 3420 tccaccacga tggacaacaa catggtgaac tactggctgc aggcctttga gttcgccttc 3480 ctgaataagg ggaaggacat tgaaactctc tggaatgact acgacaccat cgtgtatggg 3540 gatgacagat tgacatcgtc cccgagtgtt ccagataatt atgtcccccg cgtggttgcc 3600 atgtacaaag atgtgtttgg tatgtgggtc aaacctgaga aagtcaaggt cacagatacc 3660 atcattggtg cttccttctg cgggtttact gtggggaaga attaccagcc agtgccatcc 3720 aatcctgaga agctttgggc gagccttgtt acaccctgcc agaagttgcc agatgaattt 3780 gccctctatg ggaaactcct tagctttaag atcctcatgc acaacagtga agatcatcct 3840 ttcaaggact acattgataa gtgcatcgct gccttggagc atggtcgctc cttgcctaaa 3900 attactgatg agcagctgga tcatctttgg aggggaggac caaagacaaa tcctaatggc 3960 tagccgcaaa cagcaaaaca ggcgtgccac gcgcaacacg actaacatcg tggtgcgcaa 4020 tggagcagct gccaaccagg caggagctgc cggaggacag cgtagacgga ggagcaggag 4080 gaacaacaag gcgccgcagg tcaacgtgcg ggtgctatcc aaccaagcta aggttttccg 4140 caagaatact cgccgccagg gcgtcggtaa ccgtgtggtt ttccagaaga tcaacacaac 4200 cctcggtaca gttggatcca acggaagtga gcagattgaa tgcgagctca cgtgcctgat 4260 gaacccagcc accatgaaag aagccacagg cagtaacagc tttggacccc ttgggattta 4320 cgcctccaca tattccctgt tcaggatgac gaggtgcacc gtcaccctta aaccacttgt 4380 gggtgatagc gctgtctccg gcacagtcgc acgtgtctcg tggaacccaa cctccactcc 4440 gacccagaca tcctggagtg ccttgggtgc caggaagcac gtggacgtca cacctggcaa 4500 gacagggagg ttcaccctca caacccgcga ccttgtgggg ccaaaagggg ggtggtacaa 4560 aaccaacacc aagggggatc caatgatgtc atttgcagga acgctcgagg tgcacaccct 4620 tggtaggaca atgtcaacct accgcaatga gcagttcaat ggtggcctct tcttggcaga 4680 acttgagact gagtggcagt tcaaagatta ttcacaacaa cctggcatgc tcaacttaat 4740 taaaggggaa gacacccagc agtcccacat ccaaacagat gccaatggca agattcagct 4800 cgtcgtgccg aacagctctc gcatggcacg cgccgccacc ggtgccgcga gcgaaataat 4860 ctggctggtg actgacacca tcatacaggc gggcacaagt gtgctccccc caccattctc 4920 atggctcatc cgtggtgggt ggtggctcgt caagcgtgcc gcgggcgccc cagtgcgcgc 4980 gggtcaaaca acgttcgacg tgtacgcctc catctctgat gcacgtgccg acatgccatg 5040 catctcaaca accaccaaca tgaaccccat ccaggttggg ggtcttcact tccaacaggt 5100 gactccaggc aacactggta tctcaactga ggcttacgag gcccgcatca cccagcaaga 5160 ggtaacgacc aacaccatcg ctgtgataaa agcccttcag tatgtgtatc ccgccagtgg 5220 tgacaccatg atgccagccc aatcgcgctg gttcaacgcc actgcagcga caacccagat 5280 atccaccaat gggctcgggt tcctgaacgg taacacgcgc tggggcacac acaacgtgat 5340 ggaagttgaa gtaaacataa gtggaggcta ccagcagttc cccaacagaa taccagtgta 5400 cctcttctac aacaaccagc aagcgctcgc tgggtatgct gtggggcacc agagtgactt 5460 acatcaggag aatccctcac tccgtgtgtc atcagtgctc ttccaggcaa caagctcaca 5520 cgcgtacaac ttcaacgcgt cgtggcaaag ggccaccgtc cactatccgc gatcaacgac 5580 caacacgaca gaggctgcag ttgtcgttga ggcgggcggt gcaaacgcca acctccgcaa 5640 cagagtggtc gcgggcaggt ggtacgtgct acagtttgtc agcattggca tagtcgacaa 5700 ggcccttgtc gcaggatcgg ccgagttggc ttacaccgcg actgggtcat ggcaggcagg 5760 aacaactaac ttcacaccta gcgtgaatga tgctgccact ggccttatac cgacctatgc 5820 cactgggctc cattttaggg cccttgactc aaacaccctc tctgagtcga ccaactatgc 5880 agccccacga cttgagcttg atccagatga gtactatgac atgccaccct tggaggggga 5940 tggggatgcg gatgatgagg atgaagagga tggcacggat gctgaccttg agcttggtcc 6000 catggatgac tacgatgacc caccaatgtc ccggttggtg gttcatccag atgtgcagaa 6060 aacatacgag attcttctcg agctgcaccc agaacgggaa gcccgcttgg cagcaaatcg 6120 gctgaaacca agcgatgagt acagcgagtt caccaggctg taccacgatg cgctagttga 6180 tggcctatca cctagggcag ctagggcaca cgccctgggg ctctaggatg gtgcacgcat 6240 cgtgcatttc taatcagttt ttcagtttca tttgtgattt gattagcata ggtgaagggg 6300 //