ID   HQ738644; SV 1; circular; genomic DNA; STD; VRL; 1760 BP.
XX
AC   HQ738644;
XX
DT   31-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cyclovirus NGchicken15/NGA/2009 isolate NGchicken15, complete genome.
XX
KW   .
XX
OS   Cyclovirus NGchicken15/NGA/2009
OC   Viruses; ssDNA viruses; Circoviridae; unclassified Circoviridae.
XX
RN   [1]
RP   1-1760
RX   DOI; 10.1099/vir.0.028704-0.
RX   PUBMED; 21177928.
RA   Li L., Shan T., Soji O.B., Alam M.M., Kunz T.H., Zaidi S.Z., Delwart E.;
RT   "Possible cross-species transmission of circoviruses and cycloviruses among
RT   farm animals";
RL   J. Gen. Virol. 92(Pt 4):768-772(2011).
XX
RN   [2]
RP   1-1760
RA   Li L., Delwart E.;
RT   ;
RL   Submitted (20-DEC-2010) to the INSDC.
RL   Blood Systems Research Institute, University of California, San Francisco,
RL   270 Masonic Ave, San Francisco, CA 94118, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1760
FT                   /organism="Cyclovirus NGchicken15/NGA/2009"
FT                   /host="chicken"
FT                   /isolate="NGchicken15"
FT                   /mol_type="genomic DNA"
FT                   /country="Nigeria"
FT                   /isolation_source="muscle"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:942037"
FT   CDS             1..837
FT                   /codon_start=1
FT                   /product="Rep protein"
FT                   /note="putative replication-associated protein"
FT                   /db_xref="GOA:E9NWU2"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:E9NWU2"
FT                   /protein_id="ADU77013.1"
FT                   /translation="MPRQTVRRFVFTWNNYPIEAYDKCEKYLTKFCKYGIVGEEIAPET
FT                   GTPHLQGFCNLHKPTRFSTIKKHLDNSIHIEKANGSDIDNQKYCSKSGIFFETGQPSKQ
FT                   GQRSDLAVVSNKILEGSTTIRDIATQHPETYIRYFRGIRELQRLVNPISPRDFPTQVYY
FT                   YYGPPGTGKSRTALEEAKKIDPTSIYYKPRGLWGDGYTNQKCVIIDDFYGWIKYDELLK
FT                   ICDRYPYKVQIKGGFEEFNSTHIWITSNVDTDLLYKFTGYCNAAFERRITIKKYFA"
FT   CDS             complement(834..1502)
FT                   /codon_start=1
FT                   /product="Cap protein"
FT                   /note="putative capsid protein"
FT                   /db_xref="UniProtKB/TrEMBL:E9NWU3"
FT                   /protein_id="ADU77014.1"
FT                   /translation="MAYRRVRKYRRRIRRPLRKYRRRFRRIRKGRYSKPGNLYAKFTRI
FT                   HTIVVQNELNTTWDCSFQLGQFSEWTRIGSNFEMTKVNKVVVKVIPMQNVSNNSTSSVP
FT                   SYCIYPWHYGVPIPKDFGTLLSVDKAKIRPQTVPLTMSFVPNTISPAQNTSSNEFTAPV
FT                   INWKPTVQWTTTAQDQPLIRCGALGFQGDPSATGRSTRFNIVTNVYVEMRNQSIINGLS
FT                   "
XX
SQ   Sequence 1760 BP; 541 A; 421 C; 363 G; 435 T; 0 other;
     atgcctcggc aaacagtcag acgtttcgta ttcacttgga acaactatcc tatcgaagca        60
     tacgacaagt gcgaaaaata tctcaccaaa ttttgcaaat atggcatcgt tggagaagaa       120
     atcgctccgg aaacagggac gcctcaccta caggggtttt gtaacctaca taaacccaca       180
     cgctttagta ccatcaagaa gcatctcgat aactcaatcc atattgagaa ggcaaatgga       240
     tccgacattg acaaccaaaa atactgtagt aagtcaggca tcttttttga aacgggacag       300
     ccctctaaac aaggacagag gtcggacctt gctgtcgtta gtaacaaaat cttggaagga       360
     agtactacaa tacgagatat tgccacccaa catcctgaaa cgtacatcag atactttcgc       420
     ggcattcgag aactacaacg attggtcaac ccgatctctc ctcgagactt tcccacacaa       480
     gtatattact actacggtcc gccaggaaca ggtaaatcca gaactgcttt ggaagaagca       540
     aaaaaaattg atccgacttc catctactat aaaccacgag gtctgtgggg ggacggctat       600
     acaaaccaga aatgtgttat tattgacgac ttctacggat ggataaaata cgacgaacta       660
     ctgaaaattt gcgaccgtta tccttacaaa gtacaaataa aagggggatt cgaagaattc       720
     aacagcacac acatctggat tacttcaaac gtcgatacag atttattgta taaatttaca       780
     ggatattgta acgctgcatt tgaacgtcgt attacaataa aaaaatattt tgcttaagac       840
     agtccattta ttatagattg attcctcatt tccacataaa cattagtaac tatattaaac       900
     cgcgtactcc gaccagttgc tgagggatca ccctgaaatc ctaaagcgcc acagcgaatc       960
     aagggctgat cttgtgcagt tgtagtccat tgaacggtag gcttccaatt aatcactgga      1020
     gcggtaaact cattcgacga agtattttga gctggggata tagtattcgg cacaaaactc      1080
     atagtcaacg gaacagtttg tggacgaatc ttggccttat ccacacttaa cagcgttcca      1140
     aaatctttag gaataggtac cccgtaatgc caagggtaaa tacaatacga aggcacagag      1200
     gacgtactat tgttagacac attctgcatt ggaataactt ttacaactac tttattaact      1260
     tttgtcatct cgaaattact tccgatacga gtccactcag aaaactgacc cagttgaaac      1320
     gaacaatccc acgtagtatt gagttcattc tgaacaacaa tcgtatgaat tcgcgtaaat      1380
     ttagcataca gatttccagg tttcgaatac cggcctttac gtatcctacg aaatcggcga      1440
     cggtacttcc gcaacggtcg ccgaatgcgg cgacgatact ttctaactcg acgatacgcc      1500
     atatgtagag ggggagcttc cctcgctacc gctcgggaca aatataaccc ccctactaac      1560
     aaccggtttc aacatgcttt gtgtagcgct cccccagctc gcccccccgc cccccccccc      1620
     tccggtacgc tccggggggg gggcgtcgcg ccgctgtggc gcgtgcgcgt ggaaacgtgt      1680
     tcaaggctga aagtgaaagg tggttacaaa gttgggttac gaagtggcgg gtaatactaa      1740
     gccgccactt cgttgtaacc                                                  1760
//