ID   HQ738642; SV 1; circular; genomic DNA; STD; VRL; 2036 BP.
XX
AC   HQ738642;
XX
DT   31-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Circovirus NGchicken38/NGA/2009 isolate NGchicken38, complete genome.
XX
KW   .
XX
OS   Circovirus NGchicken38/NGA/2009
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus.
XX
RN   [1]
RP   1-2036
RX   DOI; 10.1099/vir.0.028704-0.
RX   PUBMED; 21177928.
RA   Li L., Shan T., Soji O.B., Alam M.M., Kunz T.H., Zaidi S.Z., Delwart E.;
RT   "Possible cross-species transmission of circoviruses and cycloviruses among
RT   farm animals";
RL   J. Gen. Virol. 92(Pt 4):768-772(2011).
XX
RN   [2]
RP   1-2036
RA   Li L., Delwart E.;
RT   ;
RL   Submitted (20-DEC-2010) to the INSDC.
RL   Blood Systems Research Institute, University of California, San Francisco,
RL   270 Masonic Ave, San Francisco, CA 94118, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2036
FT                   /organism="Circovirus NGchicken38/NGA/2009"
FT                   /host="chicken"
FT                   /isolate="NGchicken38"
FT                   /mol_type="genomic DNA"
FT                   /country="Nigeria"
FT                   /isolation_source="muscle"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:942030"
FT   CDS             1..954
FT                   /codon_start=1
FT                   /product="Rep protein"
FT                   /note="putative replication-associated protein"
FT                   /db_xref="GOA:E9NWT8"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:E9NWT8"
FT                   /protein_id="ADU77009.1"
FT                   /translation="MAPCKSSTRTPPGRVSAAEGGARREATRRPPREAAAKRWCFTLNN
FT                   PTEDEIKSLDSWLLSEFHYAIVGKEVGEQGTPHLQGFIHLKQKKRLSQLKQLFNRAHWE
FT                   KARGSDEDNEKYCSKEGNVLLTLGIPARGNRSDLSGAVAAVKAGRAMTEVAREFSEIYV
FT                   KYGRGLRDLKLLIGQQPRDFKTEVIVITGPPGCGKSRWAAEYPGSKFYKMKGEWWDGYD
FT                   HQDVVVIDDFYGWLPFCELLRVTDRYPHKVPVKGAFVEFTSRVIIVTSNSPPDAWYSEE
FT                   KCCVQALFRRINKWLVWNHDKFEDAPDCMKKYPINY"
FT   CDS             complement(1125..>1946)
FT                   /codon_start=1
FT                   /product="Cap protein"
FT                   /note="putative capsid protein; start codon not determined"
FT                   /db_xref="GOA:E9NWT9"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="UniProtKB/TrEMBL:E9NWT9"
FT                   /protein_id="ADU77010.1"
FT                   /translation="IRRRRFRRRRAPIRRRRIRRRRTRISRNLRGHRRSSRIYYFRLRR
FT                   KDKITLTQATNDFKFGTGIFTFKLADVLTVGLNAPTLKVPFEDYQIPLVKVEMRPLGVD
FT                   ITTWKGFGHTVPMYDARLKTFQGQTDLGDDPLMDFDGARKWDLRKGFKRLIRPRPQLTI
FT                   ADLATANQTAATWFSGRNQWIPLQVSGNSLFPQKVNHYGLAFSYLQPQPDPMYYECEVT
FT                   FYVKFRQFAWTTLNVPPTPNIEGMELMHICNGDCNQCFADALDPDSAVDSE"
XX
SQ   Sequence 2036 BP; 464 A; 526 C; 576 G; 470 T; 0 other;
     atggctccgt gcaaatcaag cacccgcacc ccccctggcc gcgtgtccgc cgccgaaggc        60
     ggcgcccgtc gcgaagcgac ccgtcgaccc ccccgtgagg ctgcagcgaa gagatggtgc       120
     tttactctga acaacccgac cgaggacgaa attaaaagcc tggactcgtg gttgctaagt       180
     gagttccatt atgctatagt ggggaaggag gtcggggagc aggggacccc gcatttgcaa       240
     gggtttatac acctaaagca gaagaagcgg ctttctcaac tgaaacagct ttttaatcgg       300
     gcacactggg agaaagctcg cggtagtgat gaagataatg agaagtattg ctctaaagaa       360
     ggcaatgttc tacttactct gggcattcct gcgaggggaa accggagcga cctcagcgga       420
     gctgtagccg cggtgaaagc cggaagagca atgacggagg tcgcgcgaga gttcagtgaa       480
     atctacgtca agtatgggcg gggtttgcgc gacctgaagc tgctgattgg tcagcagccg       540
     cgtgacttca aaacggaagt catcgtcatc acgggcccgc ccggttgcgg gaagagccgt       600
     tgggcagccg agtaccccgg aagtaaattc tacaagatga agggtgagtg gtgggatggc       660
     tacgaccacc aggatgtagt cgtcatcgat gacttctacg ggtggcttcc cttctgtgag       720
     ctgctccgtg ttactgaccg gtacccgcat aaggtgcccg tgaaaggggc ctttgtggag       780
     ttcacgtctc gcgtgataat agtgaccagc aacagtcccc ccgatgcctg gtacagcgag       840
     gaaaagtgct gtgtccaagc gctcttccgg cggatcaaca agtggctggt ctggaatcat       900
     gacaagtttg aagatgctcc tgattgtatg aaaaagtacc ccatcaacta ttaacccccc       960
     acccccatga cactagtaaa gggacccaag ccagccgagc cggccgcgcc cgcgagcgaa      1020
     gcgagtggcc gcgcggcctg gcgagtctga cgggtccgga gcggagcgac cgcgaatgcg      1080
     ggagcgaagc gactacactt gaaaatgaat ttgcaataaa atctttattc agagtccaca      1140
     gctgagtctg ggtctaatgc atcagcaaaa cattggttac aatccccgtt acaaatatgc      1200
     atcaattcca ttccctcaat gttgggggtc ggggggacat tgagggttgt ccatgcaaac      1260
     tgtctgaatt tgacatagaa tgtcacctca cattcataat acatagggtc tggctggggt      1320
     tgcaggtaac tgaatgcaag cccatagtga ttaacttttt ggggaaacaa gctgttgcct      1380
     gatacctgca gtggtatcca ctggtttctt cctgagaacc aggttgctgc cgtctggttt      1440
     gccgtggcta gatccgcgat tgttagttga ggcctaggcc ttatgaggcg tttaaagccc      1500
     tttctcaaat cccatttcct ggccccgtca aagtccatga gggggtcgtc gcccaaatca      1560
     gtctggcctt gaaaggtttt cagccttgca tcatacatcg ggactgtgtg cccgaatcct      1620
     ttccaggtcg tgatgtcgac tcctaggggt ctcatttcaa ccttcaccaa tggtatctga      1680
     tagtcctcaa atgggacttt cagcgttggg gcgttcagcc ccactgtgag tacatccgcg      1740
     agtttgaatg taaatatgcc tgttccaaat ttgaaatcat tggttgcctg cgtcaaggtt      1800
     atcttgtcct tgcgacgtag acggaagtag tatatccggc tactccttct gtggccacgt      1860
     aggttcctgg atatgcgtgt ccgtcgtcgc ctgattctgc gtcggcgaat gggcgccctc      1920
     ctccggcgga atctccgcct tcttatctgc ggaagtgcaa cgtcacttcc gtggctccaa      1980
     gtcgcggatt agtattaccc gcgacttgga gccacggagc cacatcgcgc agcgat          2036
//