ID   HQ738635; SV 1; circular; genomic DNA; STD; VRL; 1838 BP.
XX
AC   HQ738635;
XX
DT   31-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cyclovirus PKgoat21/PAK/2009 isolate PKgoat21, complete genome.
XX
KW   .
XX
OS   Cyclovirus PKgoat21/PAK/2009
OC   Viruses; ssDNA viruses; Circoviridae; unclassified Circoviridae.
XX
RN   [1]
RP   1-1838
RX   DOI; 10.1099/vir.0.028704-0.
RX   PUBMED; 21177928.
RA   Li L., Shan T., Soji O.B., Alam M.M., Kunz T.H., Zaidi S.Z., Delwart E.;
RT   "Possible cross-species transmission of circoviruses and cycloviruses among
RT   farm animals";
RL   J. Gen. Virol. 92(Pt 4):768-772(2011).
XX
RN   [2]
RP   1-1838
RA   Li L., Delwart E.;
RT   ;
RL   Submitted (20-DEC-2010) to the INSDC.
RL   Blood Systems Research Institute, University of California, San Francisco,
RL   270 Masonic Ave, San Francisco, CA 94118, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1838
FT                   /organism="Cyclovirus PKgoat21/PAK/2009"
FT                   /host="goat"
FT                   /isolate="PKgoat21"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan"
FT                   /isolation_source="muscle"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:942033"
FT   CDS             join(1..164,334..1012)
FT                   /codon_start=1
FT                   /product="Rep protein"
FT                   /note="putative replication-associated protein"
FT                   /db_xref="GOA:E9NWS4"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:E9NWS4"
FT                   /protein_id="ADU76995.1"
FT                   /translation="MAPNKTLRRFCWTLNNYTEDDVDQLQKDLPELCKFAIFGREVCPT
FT                   TGTKHLQGFCNLQRPKRFNNIREIFKGRAHIEGAKGSDQDNQRYCSKSGEVWSHGEPCN
FT                   QGARSDLEEVVSIIKGGERDVKAVALQCPTAYIKYFKGIENYIRIYHATPERDFKTEVY
FT                   FFWGPTGAGKSRTAREQALATGLRVYYKPRGDWWDGYNGHECVIFDDFYGWIKYDEVLK
FT                   ICDRYPYRVPVKGGYENFIAKKIWFTSNKPLEQIYKFIDYEPSAWRRRLTVEREFFYE"
FT   CDS             complement(1020..1658)
FT                   /codon_start=1
FT                   /product="Cap protein"
FT                   /note="putative capsid protein"
FT                   /db_xref="UniProtKB/TrEMBL:E9NWS5"
FT                   /protein_id="ADU76996.1"
FT                   /translation="MRAPIRRKRRAIRHVRRRLRKVRRRQRTGNITVSMKSLYVAPVEG
FT                   KTGYLLQISPAVSDFTEAATFINYFEAYRIWSVKVKVNPLFNVAADTTPVPRYYSAPWH
FT                   KPGPTSINSTGIVTIDKCKSYNGLSGSVRRFVPAVLTATGYAGITTPQYGKINWRPRIE
FT                   LNSNTATLPHYCGLYLWSADQQEGSTHIRQYEIETEIKVTFYNQKSFLG"
XX
SQ   Sequence 1838 BP; 549 A; 402 C; 430 G; 457 T; 0 other;
     atggctccga acaagacgct gagaaggttc tgctggactc ttaacaacta taccgaagat        60
     gacgtcgatc aacttcagaa ggacctccct gagttatgta aatttgctat atttggtaga       120
     gaagtttgcc ctacaactgg aacaaaacat ctgcagggat tttggtaaat ataacaacta       180
     gtgcaattcg agagatagaa atgcccagga gagccgcccg accccgctac gagggggtca       240
     cccctggcct cgctacgctc ggccggggcc ccgaccccct ctacgcgggg cgggctccgt       300
     gcatagtgtt ataacatgtg tgtctcattt cagtaatctg cagcgaccca aaagattcaa       360
     taacattcgc gaaatattta aaggacgcgc gcacattgaa ggagctaaag gatcagatca       420
     ggataatcaa aggtactgtt ctaaatctgg tgaggtttgg tcacacggag aaccatgtaa       480
     tcaaggagct cgaagcgatc tcgaagaggt tgtttctatc attaaaggag gagaaagaga       540
     tgttaaagca gtggcccttc agtgcccaac agcgtacatt aaatatttta agggaattga       600
     aaactacatt agaatatatc atgccactcc agagcgagat tttaaaacag aagtgtactt       660
     cttctgggga ccaactggag caggaaaatc cagaactgca cgcgaacaag cgctcgcgac       720
     tggattacgg gtatactaca aacctagagg agactggtgg gatggataca acggacatga       780
     atgcgtcatc ttcgatgact tctacggatg gataaaatac gacgaagtac ttaagatatg       840
     cgatcgttat ccttatcgcg taccagtcaa aggtggatac gagaatttta ttgcgaaaaa       900
     aatatggttt acgtcaaaca aaccacttga acaaatatac aaatttattg attacgaacc       960
     tagcgcatgg agaaggagat tgactgtaga acgagaattc ttttatgaat aaatctttat      1020
     taacccaaaa aactcttttg attataaaat gtaaccttta tttccgtttc gatttcatat      1080
     tgcctaatgt gtgtagaacc ctcttgctgg tctgcggacc ataaatataa cccgcaataa      1140
     tgcggaagag tcgccgtatt tgaattgagt tcaatccgcg gtcgccaatt aattttccca      1200
     tattggggcg tcgtaatccc agcataccca gtagcagtaa gaacagcagg aacaaaacgc      1260
     cgcacggacc cactgagccc attatacgac ttacacttgt cgatagtaac gatcccagtt      1320
     gaattaatag aagtagggcc aggcttatgc caaggtgctg aataatatct aggtaccgga      1380
     gtagtatcag cagcaacgtt aaataaaggg ttgaccttga ctttaacaga ccaaatacga      1440
     taggcttcaa aataattaat aaaagtggcg gcttcggtaa aatccgagac agccggagat      1500
     atttgcagta ggtatccagt tttgccctct accggagcaa cgtataaact cttcatagaa      1560
     accgtgatat ttcctgtccg ctgacgtcgt ctgaccttgc gtaatcgtcg gcgtacgtgc      1620
     cgaattgcgc gtcgttttcg ccttatcggt gcgcgcatgc gcactcctcg gcgtctgaag      1680
     gccatctctg tcgctatgca cggagcatgt ctatatatag atcgggcgcg gagtggggga      1740
     ccaatcagcg tgcgttacgg agtgttacga agtggcgggt aatactagcc cgccacttcg      1800
     ttgcctatat aatcgcataa tattcgtgct aagcccaa                              1838
//