ID HQ595345; SV 1; linear; genomic RNA; STD; VRL; 7672 BP. XX AC HQ595345; XX DT 16-AUG-2011 (Rel. 109, Created) DT 16-AUG-2011 (Rel. 109, Last updated, Version 1) XX DE Bat picornavirus 3 strain TLC21F, complete genome. XX KW . XX OS Bat picornavirus 3 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; OC Picornaviridae. XX RN [1] RP 1-7672 RX DOI; 10.1128/JVI.02364-10. RX PUBMED; 21697464. RA Lau S.K., Woo P.C., Lai K.K., Huang Y., Yip C.C., Shek C.T., Lee P., RA Lam C.S., Chan K.H., Yuen K.Y.; RT "Complete genome analysis of three novel picornaviruses from diverse bat RT species"; RL J. Virol. 85(17):8819-8828(2011). XX RN [2] RP 1-7672 RA Lau S.K., Woo P.C., Lai K.K., Huang Y., Yip C.C., Shek C.T., Lee P., RA Lam C.S., Chan K.H., Yuen K.Y.; RT ; RL Submitted (08-NOV-2010) to the INSDC. RL Microbiology, The University of Hong Kong, University Pathology Building, RL Queen Mary Hospital, Pokfulam Road, Hong Kong, China XX FH Key Location/Qualifiers FH FT source 1..7672 FT /organism="Bat picornavirus 3" FT /host="Hipposideros armiger" FT /strain="TLC21F" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="12-Sep-2008" FT /db_xref="taxon:1074865" FT 5'UTR 1..424 FT CDS 425..7441 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G0Y2E5" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR002527" FT /db_xref="InterPro:IPR003138" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="UniProtKB/TrEMBL:G0Y2E5" FT /protein_id="AEM23662.1" FT /translation="MPVVVNSVYLFEVFLSKEGRRRLNVFIYTHNKAAWIVRSKVLVSS FT SNNIQKISNRGIAASKSDVGDRHELSSGGGNITMINYYGAQYSQAHANPSVQMDPEKFT FT KPLTDLALAGTGPALKSPNVEEAGYSDRIMQITAGNSTLTTQEAAQAIVGYGVWPDYDV FT GVGHAIDKETKPGPAVERFYTLDSIYWNQDWKGRVIRLPGALTDLGMFGQNCQFHFLMR FT SGFCVHVQVNASKFHQGMLLVAMVPEAQHPTIGTNDNAALSDETLAEIPVPQLTLFPHQ FT LINLRTNNSATIIYPYTNCTPAENALTHNFVSLYIVPIVPLKFEKGASTTIPVTVSISP FT MFAEFSGLRNRVVAQGVPTFQIPGSGQFVTTIKNDGFPALPHYQETPLHFIPGEVTNLL FT EVCQIDTFANLGTSELSFTIDVSNQISVGGKIKDFDMSLNSTVLSTTYLSKCARWYTHY FT RGSVNLTFMFCGSAMATGKILIAYTPPGGDAPATRKDAMLATHVVWDLGLQSSVTFTVP FT YISQSQYRYNNIDGNIFSYDGFISMFYQTNIVVPPGAPSTCQIVLLVSAAKDFTLRLAT FT DSAYFQGLGEDLGNLVNGSVQTTAQQVLRPATGLASEVPNTLSIHTGESGILTAPETGA FT SSTTEAGAMIETRSVSTMYSAAETSIEAFMSRYAMFSAFDLRTGSTAANGEYRILDLRF FT SEESSTHKALVAKYRMFTYLRMGYDVVAIVSPKANIRDRVHMSSPPKFQMMFIPPGCPA FT PRLVDGPEWYLPTTPSVYFSVDQPPASLRLPYMGVMSTFASRYDGFYSFQTTNPHSYGY FT FPGNDIGKLAIRAVTDGVTANSDLVDYRVVIFARPTMIRAWLPRPIKSLKTQVSVSRSK FT GRVIFTDDDDADQLLIGQGYMGTDLKVSNRGPHPTRRKITHIPRFAREALQTTWLAWDT FT ELRFSFHIFPVSRTDFIAPFHLFNNRLVFAPYGDDDFLQIPYTAVRCDLEHDLVLGRMG FT KPIFTRTIRLAKPEQAMWFACDNSDHSYGEKHSSWNFVSEIHVDEPFPHTQHDLISFPH FT PIPFGLCGSPLLTRDGIVAMATAGSDSVSYFTNLHLVEWLNVEPLAEEQGISDWFSDFA FT SQLGSAFGEGAAEQVADKVQGMISTSGIAQLPNAACKDIMVLLTKILCACVIISKSEDV FT LASAVSVGVMVGVDFLTTSPFTFLRQKVAEMCGLVYAEEQGPSDWIKEFNAACTAAKGL FT EWIGDKLSKFVEWIRKMFEKEDRHRKKFMKQLEDLPLLMESIDKIMAARGQYKDEDVRR FT ICGKMRQLKLGADIYGVQRNQATHQIVKYYQKAMSILQAMTQGRSEPVALLVHGTPGTG FT KSLATEIIGRALTQKLGGNRPYSLPPDPKHFDGYAQQPVVIMDDVGQNPDGEDLKLFCQ FT MVSSTEFVVPMAALEEKGMSFTSKFVLASTNCNMLSPPTIAEPAALKRRFFLDLFIEVD FT TDYKRNDKLTANTALDRCNHPATNFKHCCPLICGKAIRLKDMRTMKMFTLDEVVSMLYA FT EHLNRQGCGSKLEAIFQGPGTNDIISCEWNAEAKRRGVALVTEDEWFETDYDKEESVLM FT TIEEQRARGIEQPKPAPKEIADLLMAVPTEEVIKYCKAQGWLIPAGVTIKRTKASTMDW FT IKKLSYGLSILSSLTAVCGFIYMLYKIFASVQGPYTGTAQKTLKKPELKRKAVAQGPDL FT EFAQKLMNSNVIPVETQTGAYSALAMYDTWLLLPKHSQPGETVSVDGQTHDVLDMVELE FT NTQGSLELVAVKIDRPTKYRDIRRYIPDHFSTESDCMLVVNNKNFSRMFCPVGRVTAFG FT FLTLSCKPTYNTCTYRYPTKSGQCGGVVCKSGKIIGLHIGGDGLNGYGAILTKRIVGAI FT EQGAVVRKEKTPFKPINLNSKTKFHPSVFFDVFPGTKEPAALHPKDKRLEVDLDEAMFA FT KHKGNTDIPIDEELGIAIDHYTEQIRPLMPINLTEPLTMEEVVYGTDNLEGLDLSTSAG FT FPYVIKNTRKRDLIPERGQPLTKLLDALDLYGYDLPYVTYLKDELRPIDKVRKGKTRLI FT ECSSMNDTIRMKTTFGRLFQTFHANPGTVTGSAVGCNPDLDWSKFYAEMGDNPLIAYDY FT SNFDASLGSVWFEALKQVLRKLGYNEKQLKCIDHVKNSTHLYKDIVYEVEGGMPSGCSG FT TSIFNSIINNLIIRTLVLKSYKSIDLDRLRIIAYGDDVIISYPHQLDAAALAECGKDYN FT LTMTPADKSDTFNEVTWDNVTFLKRRFVPDKHFPFLVHPVFPMEEIMDSIRWTKSAANT FT QQHVTSLCLLAWHNGQEVYEDFVEKVRSVPVGRALHLPPYSALYREWLDQF" FT mat_peptide 425..589 FT /product="L" FT mat_peptide 590..784 FT /product="VP4" FT mat_peptide 785..1489 FT /product="VP2" FT mat_peptide 1490..2170 FT /product="VP3" FT mat_peptide 2171..3091 FT /product="VP1" FT mat_peptide 3092..3715 FT /product="2A" FT mat_peptide 3716..4042 FT /product="2B" FT mat_peptide 4043..5035 FT /product="2C" FT mat_peptide 5036..5434 FT /product="3A" FT mat_peptide 5435..5503 FT /product="3B" FT mat_peptide 5504..6052 FT /product="3C" FT mat_peptide 6053..7438 FT /product="3D" FT 3'UTR 7442..7659 XX SQ Sequence 7672 BP; 1947 A; 2067 C; 1785 G; 1873 T; 0 other; gttacccgcc tcagtacttc gagaaaccta gtacgcttga tgattccaaa ttggtatgat 60 ccggtcaacc ccagaccaga aactgtggat gggggtcacc attcctagta tggcaacata 120 caggtgtccc cgcgtgtgtc acaggccctt acgggtgcca tttcggatga gtctggccga 180 agagtctatt gagctactgt tgatacctcc ggccccctga atgcggctaa tctcaacccc 240 ggagccactg ggtggtgaac caaccacttg gtggtcgtaa tgagcaattc tgggacggaa 300 ccgactactt tggggtgtcc gtgtttcttt tgttcatatt aaactgtttt atggtcacaa 360 cacaacttgg tacgatttgt gattattcac tgctcacttg tcacagtaaa tatacacaat 420 catcatgcct gtcgttgtga actcagttta cctttttgag gtgttcctct ctaaggaagg 480 ccgccgtcgg ctcaatgtct ttatttacac acacaacaaa gctgcctgga ttgtgcgttc 540 caaggttctg gtgtcttcaa gcaacaacat acaaaagata tctaaccgag gaattgcggc 600 gtccaaaagc gacgtaggtg atcgccatga actgtccagt ggcggtggca acataactat 660 gatcaactac tatggtgccc aatactccca ggctcatgcc aacccttctg ttcaaatgga 720 cccagagaag ttcacaaagc ccctcactga tcttgcttta gcggggactg gtcctgcatt 780 gaaatccccc aatgtggagg aggctggtta ctcagatagg atcatgcaaa taaccgcagg 840 caactccact cttacaacac aggaagcagc tcaggcgatt gtgggttatg gtgtttggcc 900 agattatgat gttggtgttg ggcatgccat tgacaaggaa acaaagcctg gacctgctgt 960 tgagcggttt tacaccctcg atagcattta ctggaaccag gattggaagg gtcgcgtgat 1020 tcgcttgcct ggcgccctca ctgaccttgg tatgttcggt cagaactgcc aattccactt 1080 cctcatgaga tcaggattct gcgtccatgt gcaggtcaac gcctcaaaat ttcaccaagg 1140 aatgttactt gttgccatgg tcccggaagc ccagcaccca acaataggca ccaatgataa 1200 cgccgcactg tctgatgaga cccttgcgga gatccctgtt ccacaactta ccctctttcc 1260 tcatcagctc attaacctgc gcacgaacaa cagtgccacc atcatttatc cgtacaccaa 1320 ttgtactccc gctgaaaatg ccctgacaca caacttcgtg tctctataca ttgttccaat 1380 tgtcccactg aagttcgaga agggcgcatc cacgaccatc cctgtgactg tctccatctc 1440 gcccatgttc gcagaattct cagggctccg taacagggtc gttgctcagg gtgtccctac 1500 tttccagata cctggatctg gacagttcgt aaccactatc aagaacgatg gtttcccagc 1560 attgccccac taccaagaga ccccgctcca cttcatccct ggtgaggtca cgaaccttct 1620 tgaagtctgc cagattgaca cttttgccaa ccttgggaca tctgagctct ctttcaccat 1680 tgacgtgtca aaccaaataa gtgttggtgg caagataaag gattttgata tgagcctaaa 1740 tagcactgtt ctctcaacca cctacctttc caagtgtgca cggtggtaca ctcactatcg 1800 tggttctgtt aacctcacct ttatgttttg tggttccgcc atggctactg gtaagattct 1860 catcgcttac acaccaccag gcggagatgc cccagcaaca cgcaaggatg ccatgctcgc 1920 gacccacgtt gtgtgggatt tggggctcca gtcttcagtt acattcacag tcccctacat 1980 ctcccaatca cagtacagat ataataacat tgatgggaac atcttctcat atgatggttt 2040 catcagcatg ttctatcaaa ccaatatagt tgttccccct ggtgccccat cgacctgcca 2100 aattgtcctc ctagtttctg ctgcaaagga cttcaccctc cgcttggcta ctgacagtgc 2160 ttacttccag ggcctcggcg aagaccttgg gaatcttgtc aatggttctg tgcaaactac 2220 cgcccagcag gtacttcgcc ccgctacagg tttagcttcc gaagttccca atactctttc 2280 tatccacaca ggcgagtcgg ggattctgac tgcaccggaa acaggcgcct cctccaccac 2340 tgaggctggg gctatgattg agaccaggtc agtgtctact atgtactctg ccgcagagac 2400 ttccatcgag gcatttatgt ctcggtatgc aatgttctct gccttcgacc ttcgcactgg 2460 ttcaactgct gcgaacggcg aatacagaat cctggacctc cgcttctcgg aggaatcatc 2520 tacacacaag gcccttgttg caaagtatcg catgttcacc taccttcgta tggggtatga 2580 tgtggtcgct attgtctccc caaaggcaaa catcagggac cgcgtccata tgtcatcacc 2640 gcccaaattt cagatgatgt tcattccccc tggttgccca gcaccccgtc ttgtagatgg 2700 tccggagtgg tacctcccca ccacccccag tgtctatttc tctgtggacc aacccccggc 2760 atccctacgg ctaccataca tgggcgttat gtccaccttt gcctcccgtt atgatggctt 2820 ctattcattc cagacaacca atcctcatag ctacggttac ttcccaggca atgacattgg 2880 caagcttgca atccgcgcgg tcacggatgg cgtgacggca aactcggacc ttgtcgacta 2940 tcgcgtggtc atcttcgcgc ggccaaccat gattcgcgca tggctgccga ggcctatcaa 3000 gtcacttaag actcaggtgt cagtaagccg atcgaaaggt cgtgtgatct tcacggatga 3060 tgatgacgct gaccaactcc tcataggtca aggctacatg gggacagacc tgaaggtatc 3120 aaatagaggg ccccacccaa cccggcggaa gattacacac atcccccggt ttgccaggga 3180 ggccctccaa actacctggc ttgcttggga cactgagctg agattctctt tccacatctt 3240 cccggtctcc cgaactgatt tcatcgcccc attccacctt ttcaacaaca gacttgtttt 3300 tgcaccatat ggtgatgatg acttcctcca gatcccatac acggcagtga ggtgtgacct 3360 tgaacatgat ttggtcctgg ggcgcatggg gaagccaatt ttcacccgta ccatcagact 3420 ggccaagcca gaacaggcga tgtggttcgc atgtgataac agcgaccact cctatggtga 3480 aaagcactca agctggaact ttgttagtga aatccacgtt gatgaaccct tcccgcacac 3540 tcagcatgac ctgatatcct tcccccatcc tatcccgttt ggtttgtgtg gctcccctct 3600 cctgacgcgt gatggcattg tggctatggc cacagcaggc agtgactcag ttagttattt 3660 cacaaacctc caccttgtgg agtggctcaa tgtggagccc ttagccgaag aacagggcat 3720 ttcagattgg ttcagtgact ttgcctcaca actgggaagc gcattcggag agggcgccgc 3780 agaacaggtc gcggacaagg tgcaaggaat gattagcacc agtggcattg cccagttgcc 3840 gaatgcggca tgcaaagata ttatggttct cctgacaaag atcttgtgtg cttgtgtcat 3900 tatatctaaa tcagaggatg tccttgcctc agctgtctct gtcggtgtga tggtgggcgt 3960 tgacttccta accacatcac ccttcacatt cctcaggcaa aaggttgctg aaatgtgtgg 4020 tcttgtctac gccgaggaac agggtccttc tgactggatc aaggagttca acgcggcatg 4080 tacagcagcc aagggcctag agtggattgg cgacaagctc tcaaagtttg tcgagtggat 4140 ccgcaagatg tttgaaaagg aggacaggca caggaaaaaa ttcatgaagc agctcgagga 4200 cctccccttg ctcatggagt ccatagacaa aataatggca gctcgtggcc agtacaagga 4260 tgaagatgtt cgccgcatat gtggaaagat gcgccaactc aaactgggcg ctgatatcta 4320 cggggtgcag cgaaaccagg ccacacatca gattgtcaag tattaccaaa aggctatgtc 4380 tatacttcag gcaatgaccc aagggcgctc cgaaccggtg gcgcttttgg tacacggcac 4440 cccaggaaca gggaagagct tagccacaga aattattggc agggccctca cgcagaagtt 4500 gggtggcaac aggccatact ctctcccacc tgacccaaaa cactttgatg gttacgccca 4560 gcaacctgtc gtcatcatgg atgatgttgg tcaaaaccct gacggcgagg atctcaaact 4620 cttctgccag atggtctcct ctactgaatt tgttgtccca atggccgcgc tggaagagaa 4680 agggatgtcc ttcacctcaa agtttgtcct agcctcaact aactgcaaca tgctgtcccc 4740 acccacaatc gctgaacccg cagccctaaa gcgcagattc ttcctcgacc tcttcattga 4800 ggttgatacc gactataaaa ggaatgacaa gcttactgca aacactgcac ttgacaggtg 4860 caaccatcct gcaaccaact ttaagcactg ctgtcctctt atctgtggta aggccatccg 4920 tctcaaggac atgaggacaa tgaagatgtt cacactcgat gaggtggtgt caatgctcta 4980 cgcggagcat ctaaaccgcc aggggtgcgg ttctaagctc gaggcaatct tccaaggccc 5040 cggcactaat gacatcattt cgtgtgaatg gaatgctgaa gcaaagagga ggggcgtcgc 5100 tctcgtcaca gaggatgagt ggtttgagac tgactacgac aaagaagagt ctgtactcat 5160 gaccattgag gaacagcggg cccgtggtat tgaacaacca aagccagcac caaaggaaat 5220 tgcagacctg ctcatggctg ttcctactga agaggtgatt aaatactgta aggcgcaggg 5280 ttggttgatt ccggctggag ttaccatcaa gaggaccaaa gcttcaacaa tggactggat 5340 caagaaactt tcctacggtc tctccatctt gtcatccctc accgctgtct gtggcttcat 5400 ttacatgctt tacaagattt ttgcctcggt tcagggcccc tacacaggaa ctgcccaaaa 5460 gacactcaag aagcctgaac tcaagcgcaa agctgtcgcc caagggccag acctggaatt 5520 cgcccagaag ctcatgaact ccaatgtgat tcccgtggag acccagacag gtgcctactc 5580 tgcccttgca atgtatgata catggctcct gctgccaaag cactcccaac ccggagaaac 5640 agtgagtgtc gatggtcaaa cgcacgacgt tctggatatg gttgaactcg agaacacgca 5700 gggcagcctt gaactcgtcg cagtcaagat tgaccgcccc actaagtata gggatataag 5760 aagatacata ccagaccatt tttctactga gtcagactgc atgcttgttg tcaataataa 5820 aaacttctcc aggatgttct gccctgttgg ccgtgtgact gcttttgggt tcctcaccct 5880 atcatgtaaa cccacatata acacctgtac ctaccgctat ccaactaaat caggccagtg 5940 cggtggggtg gtctgtaaat cagggaaaat tatcggtctc cacatagggg gcgacgggct 6000 gaatggatat ggtgccatcc tgaccaaacg catcgttggt gccatcgagc agggcgcagt 6060 cgtgcgcaag gagaagactc cttttaaacc cattaatctc aactctaaaa ccaaattcca 6120 tcccagtgtt ttcttcgacg tcttcccagg aaccaaggaa ccagccgcac tccacccaaa 6180 agacaagcgc cttgaagtgg acctcgatga ggcgatgttt gccaagcaca agggtaacac 6240 agacattccc attgatgaag agcttgggat tgccatagac cactacacag agcagattag 6300 accccttatg cccattaacc ttacagaacc tttgacaatg gaggaggtcg tctatgggac 6360 agataacctt gaggggcttg acctctcaac ctccgctgga tttccatatg tcattaagaa 6420 caccaggaag agggacctta ttcctgagcg tggccaaccc ttaacaaaat tgcttgatgc 6480 ccttgacctc tatggctacg acctcccgta tgtcacatac cttaaggatg agctcagacc 6540 aattgacaaa gtcaggaagg ggaagacccg cctgatagag tgcagttcca tgaatgacac 6600 aatcaggatg aagaccactt ttggtcgctt gtttcagact ttccatgcaa atccaggtac 6660 cgtcaccgga tcagctgttg gttgcaaccc ggatcttgac tggagcaaat tctacgcgga 6720 gatgggtgac aacccactca tagcgtatga ctactcaaat tttgacgcct cactgggctc 6780 agtgtggttt gaagcactca aacaggtcct ccgtaaattg ggatacaacg aaaagcagct 6840 caagtgcatt gaccacgtga agaacagcac ccacctctac aaggacatcg tgtatgaggt 6900 tgagggaggt atgccttcag gatgttctgg gacatccatc ttcaattcaa tcataaataa 6960 cctcataatt aggacacttg tgttgaagtc ttataaatca attgacttgg atcgcctgcg 7020 catcattgcg tacggtgatg acgtgattat atcttaccct caccagctgg atgctgctgc 7080 actcgcggag tgcggcaagg attacaattt gacaatgaca cctgcagaca agtcagacac 7140 attcaatgag gtaacatggg acaacgtcac ctttcttaag cgacgatttg ttccagacaa 7200 gcacttccca ttcttggtcc accccgtctt cccaatggaa gagatcatgg actcaatccg 7260 ctggacaaaa agtgctgcaa acacccagca gcacgtcacc agcttgtgcc tcctagcatg 7320 gcataatggc caggaagtct acgaggattt tgtagagaaa gtgagaagcg tgccagtagg 7380 tcgagcgctt catttaccac cttactcagc tctctacagg gaatggcttg accagttttg 7440 agaaggggaa ccacccgtaa aatggtttca gcggggaagc ccgcccaggc ccaatttctt 7500 ggccaccttt actatccctt ctatcatttc acactcgaag accgaggcca cgcggagtac 7560 gaacgagggt acagtcttca aaaccttgca cacatgaatc aatcagaatc ggcctttcat 7620 gtggcattgt agtagattaa gaatgagatt ggcattttta aaaaaaaaaa aa 7672 //