ID HQ595343; SV 1; linear; genomic RNA; STD; VRL; 7625 BP. XX AC HQ595343; XX DT 16-AUG-2011 (Rel. 109, Created) DT 16-AUG-2011 (Rel. 109, Last updated, Version 1) XX DE Bat picornavirus 2 strain SK17F, complete genome. XX KW . XX OS Bat picornavirus 2 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; OC Picornaviridae. XX RN [1] RP 1-7625 RX DOI; 10.1128/JVI.02364-10. RX PUBMED; 21697464. RA Lau S.K., Woo P.C., Lai K.K., Huang Y., Yip C.C., Shek C.T., Lee P., RA Lam C.S., Chan K.H., Yuen K.Y.; RT "Complete genome analysis of three novel picornaviruses from diverse bat RT species"; RL J. Virol. 85(17):8819-8828(2011). XX RN [2] RP 1-7625 RA Lau S.K., Woo P.C., Lai K.K., Huang Y., Yip C.C., Shek C.T., Lee P., RA Lam C.S., Chan K.H., Yuen K.Y.; RT ; RL Submitted (08-NOV-2010) to the INSDC. RL Microbiology, The University of Hong Kong, University Pathology Building, RL Queen Mary Hospital, Pokfulam Road, Hong Kong, China XX FH Key Location/Qualifiers FH FT source 1..7625 FT /organism="Bat picornavirus 2" FT /host="Miniopterus magnater" FT /strain="SK17F" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="01-Sep-2005" FT /db_xref="taxon:1074864" FT 5'UTR 1..331 FT CDS 332..7435 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G0Y2E3" FT /db_xref="InterPro:IPR000081" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR002527" FT /db_xref="InterPro:IPR003138" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="UniProtKB/TrEMBL:G0Y2E3" FT /protein_id="AEM23660.1" FT /translation="MCFFFHTKTNDVSPMTKKTPVERLMSPGPKCLSMGEELLIVYDYY FT MLFIKKNPKVTPRIDRPANTDYKRTTNCGAAASRTSTESHKNQSATAGGNITQINYYGS FT DYASAHGAAQTRLDPDSLARPLANVADLAGPALKSPTVEELGYSDRIMQITSGNSTITT FT QEAVNAVVAYGVWPSIDEGVGQAIDMQTVPGPSCERFYTFSSQSWTTTTVGYGLKLPLA FT LTDMGVFGQNCQYHFLCHSGFCVHVQVNASKFHQGLLLVCAIPDCQVQGRLEGDSVTGL FT YTLESKDFEDYPAPQLTLYPHQMINLRTNNSATLILPYVSASPAESPLTHNIWTVYLVP FT VVPLEYAAGASTSLPITVSVAPMSCSFSGLRNQVPFHQGIPVFEVPGSGQFMTTLRNSG FT YPCLPDYEETPSHHIPGKVVNLLEVMSVDTFCNCSDSDTQTKMYFTLNVNITEDKPIRA FT WDMDLASKLFTTTYIGRVTKWFSQHRGSIRLTFLYTGSAMSTGKLLIAYTPPGGSEPKT FT RKDAMLGTHVVWDIGLQSSITMVVPWVSQTVYRYNHPKEENALTYRGFVTVFYQTALIV FT PADTPHTASVCVLASVTSDFVMRVPTDSAYYQGIGDDLGRLVDNEVAKAIEGTRAPAIT FT GTSVPPTLSVQVGEAAALTAPETGATAATEPSSVLETRNLSITYSRDEMSIENFFSKYA FT FFFKMDFSPDNNATRHFVRNLRFDDNDNTQRAVISKYNMFTYFRAAYDIVIVVSMNGSS FT GPKNGLPMVQVMFCPPGCPVPSSDEGNEWYLPTTPSVYQQVGHAPISLRIPYMGPASSY FT TTTYDGYEDFNLNNREYGVFPGNEMGHLAVRLLSRAAGASQLDTWIRVSCFARPVNISA FT YCPRPIVTSKPESRAKVTRGRVVYVEDGDTSVPRVLNMGPKHKNGRRLAVTSCPPHLMK FT YFEDCYQCLNEDDGFSFHCFPLNSRECLIPGHLYVADLKFQRTNGAYPHEIPYRKKWAD FT WTMDLVCLQLDRDFFETRVFLCKRQCCKNTWTVCDTTEHNVAIRCGDATFQKDVWVDGP FT ITSSGHWQRNLLRVEIPIRPGHCGSPLICKHGICGMASVSDEQSVSWFTCVWMADEYED FT EDLYPFAEEQGPDADEQGLRDIMNNVAKELGHSFGASTMDGVADVIEDAVKKYTFDKAN FT AQYTYVKLVLKWLVKTITAVTMIARSDPNHRIEVASGLGVIFGIDLLTTEPFEWLKSKV FT LDCLGYKSASEQGMNDFVDWIKDFNAACTAAKGLEWIGQKIMQFIDWLKTLFKKENPAR FT TKFMQQLEDLPLMMKHIDSISAARGKYPESEIRKVCEAIVDLKRGADLFGVERNTATTQ FT IVKYYQKAQNILSSMTKGRTEPVAVLIHGAPGLGKSLVTEVVGRQLSRYYGAGRPYSLP FT PDPKHFDGYAQQPVVIMDDLGQNPDGEDCKLLCQMVSSTEFITPMASLDDKGMPFTSDF FT VLASTNLSALKPPTVSEPNAIRRRFFIDAAIEPSKDYLKPSGHLDADTSLTQCDHAAVN FT FAKCCPLICGKALVLKDLRTGVKYSVDEVVTKLKRERETRHACGSKLDAIFQGPYETCP FT SYESWLQTQYDRMPPVLKTFEEQKNEGILRPTPKEVIDLIRAVPTQEVIDYCKSQGWLL FT PDDVVSIRIEKDINKMVTNITKGLSIIASLCAITGFVYLMYTVFAKGQGAYSGQPTTPL FT KKPELRRVAKTQGPDMEFVNKLFKQSIFSVKTKKGWFSGLGLHTQWLLLPKHSEPEDVI FT EMNDVEYKCLDIVILENSQGSLELVAVKIDRPVNFRDIRKYIPEHFQRESGCFLAVDNP FT HYERMFAPVGTVSMFGFLNLSYKATYNTCHYHYPTRSGQCGGVICKAGKIIAMHIGGDG FT ISGYGAILTKRIVAAIEQGAITKMEETQTTPINISTKTKLHPSVFFDVFPGEKEPAALH FT PKDKRLEVDLEQAMFSKYKGNCSVIRPTPNMLVAVDHYVSQIQPIMPTNLIEPLSLEEV FT VYGIENLDGLDLATSAGYPYVVKGVRKRDLIPPKGEPLTKLVSALDLHGYGQPFVTYIK FT DELRPKKKIALGKSRLIECSSLNDTILMKRVYGRLFQTFHANPGTITGSAVGCNPDVDW FT SKFYAEMAGRPLIAFDYSNFDASLSPVWFECLKLVLSKLGYRDDPKICDKINADVLPSW FT IIDHVTFSSHLYKNKYYEVEGGMPSGCSGTSIFNSIINNIIIRTLVLDVYKGIDLDQLR FT MVAYGDDIVATYPFQLDAAALAEAGKVYGLQMTPPDKDSDFNDTTWDNVTFLKRTFVPD FT EEFPFLIHPCFPMKEIYESIRWSRSAAATEEHVQSLCYLAWHNGRSVYEDFIEKIRTVP FT VGRALKLPSYSVLRQQWLDQF" FT mat_peptide 332..550 FT /product="L" FT mat_peptide 551..745 FT /product="VP4" FT mat_peptide 746..1465 FT /product="VP2" FT mat_peptide 1466..2155 FT /product="VP3" FT mat_peptide 2156..3037 FT /product="VP1" FT mat_peptide 3038..3703 FT /product="2A" FT /note="alternate cleavage site" FT mat_peptide 3038..3682 FT /product="2A" FT mat_peptide 3683..4042 FT /product="2B" FT mat_peptide 3704..4042 FT /product="2B" FT /note="alternate cleavage site" FT mat_peptide 4043..5047 FT /product="2C" FT mat_peptide 5048..5389 FT /product="3A" FT mat_peptide 5390..5458 FT /product="3B" FT mat_peptide 5459..6007 FT /product="3C" FT mat_peptide 6008..7432 FT /product="3D" FT 3'UTR 7436..7609 XX SQ Sequence 7625 BP; 2087 A; 1509 C; 1774 G; 2255 T; 0 other; gcaagtggaa acgcgatttt atatgtggct ggccaccacg gaataacggc aattgtttac 60 atgtgggaag tgcaacctcc ctagccgata gcccttgacc gggtgtgtag gataggaaag 120 gtgcccactg tgagcgacag gttatggtag agtggatacc tagccagggg caatgggact 180 gctttgcata tccctaatga agcatcgaga gttctctgct cattacccgg tgacggttgt 240 gtgggggggg ccccacacac tagatccata ctgcctgata gggtcgcggc tggccgacca 300 taacctgtat agtcagttga ttttaaccaa gatgtgtttc tttttccata caaagactaa 360 tgatgttagc cctatgacca agaagactcc cgttgaacgc ctcatgtctc cagggcccaa 420 atgcctgagc atgggagaag agctactcat agtttatgac tattacatgc tctttatcaa 480 gaagaacccg aaggtgaccc ccagaattga tcgccctgca aacactgatt acaagaggac 540 taccaattgt ggggctgctg cctctcggac ttccactgaa tcgcataaga accagagtgc 600 aactgctgga ggcaacataa cccagataaa ttactatggt tcggactatg cgtcggctca 660 cggtgctgct caaacccgtt tggatccgga ttctttggca cgacccttgg ctaatgttgc 720 tgatttggct ggccctgctc tcaaatcccc cactgttgag gaattaggat attctgaccg 780 gatcatgcaa atcacatctg gaaactcgac catcacgacc caggaagccg ttaatgcagt 840 ggttgcctac ggagtctggc cctcgattga tgagggtgtt ggccaggcta tagacatgca 900 aacagtccct gggccatcat gcgagaggtt ctacaccttt tcaagccaat cttggaccac 960 aactacagtt ggctacggac ttaagcttcc tttagctctt actgatatgg gtgtgtttgg 1020 tcagaactgc cagtaccact ttctttgtca ttccgggttt tgtgttcatg ttcaggttaa 1080 tgcctctaaa ttccaccagg gcctactact ggtgtgtgcc atcccggact gtcaggtgca 1140 gggaaggctt gaaggagatt ctgttaccgg tttgtatact ttggaaagta aagattttga 1200 agattacccg gcacctcagt tgacccttta tcctcatcag atgataaatt taagaacaaa 1260 taattcagca actttgattt tgccctatgt gtcagcttca cctgcagaat caccattgac 1320 ccataatata tggacagttt atttagtacc tgttgtgcca ttggagtatg ctgctggggc 1380 atccacaagc ttacccatta cagtgtctgt tgcccctatg tcttgttctt ttagtggatt 1440 gcgtaatcag gtgcctttcc atcaagggat tcctgtcttt gaggtacctg gctctggaca 1500 atttatgact acattaagga attccggtta cccatgcctc ccggattatg aagagacccc 1560 ctcacaccat atccctggta aggttgtcaa ccttttggag gtcatgtctg ttgacacctt 1620 ctgcaactgc tcagattcag atacacagac aaaaatgtac ttcactttaa atgtgaatat 1680 aaccgaggac aagcccatta gagcctggga tatggatcta gcctcgaagt tatttaccac 1740 cacctatata ggtcgggtga cgaaatggtt ctcccagcat agaggctcca ttagattgac 1800 attcttgtat acaggctcgg ccatgtctac aggtaaatta cttattgcat ataccccacc 1860 aggtggctct gagcctaaga caaggaaaga tgccatgcta ggaacacatg ttgtctggga 1920 cattgggttg caatcatcaa taacaatggt agtgccatgg gtctcccaaa cagtttatcg 1980 gtataaccac cccaaggagg aaaatgcatt aacatatagg ggatttgtta ctgtttttta 2040 ccaaacagca cttattgtac cagctgatac tcctcataca gccagcgtgt gtgtgctggc 2100 atctgttaca tcagattttg ttatgcgtgt acctactgat tctgcctatt atcagggtat 2160 tggtgatgat ttgggcagac ttgtggataa tgaggtggca aaagcaatcg aaggcacaag 2220 agccccagca attacgggga cgtcagtgcc cccaacccta tctgtacaag taggtgaggc 2280 agccgccctg accgcacctg agacaggtgc tactgctgct acagaaccat ctagtgtgct 2340 tgagacccga aatttgtcca tcacctatag tagagatgaa atgtctatag agaatttctt 2400 ttccaagtat gccttctttt ttaaaatgga tttttcgcca gataataatg ctacccgtca 2460 ttttgttaga aatttaaggt ttgatgataa tgacaatacc cagcgggctg ttatatccaa 2520 gtataatatg tttacatatt ttagagctgc ttatgatata gtaattgttg tgtctatgaa 2580 tggaagttca ggaccaaaga atggattacc catggttcaa gtaatgtttt gccccccagg 2640 gtgtcctgtt ccatcttctg atgagggtaa tgagtggtat ctacccacca ccccttctgt 2700 ctatcaacag gtaggtcatg cccccataag cttgaggatt ccttatatgg ggcctgcatc 2760 atcttataca acaacttatg atggatatga agattttaat ctcaataata gggagtacgg 2820 tgtgtttcca gggaatgaaa tgggtcattt ggcagttaga ctattatccc gggcggcagg 2880 ggcatcacag ttggacacct ggattagggt ttcatgtttt gctaggccag tgaatatctc 2940 tgcctactgc ccccgtccca ttgttacatc aaagcctgaa tctagagcta aagttacccg 3000 tggacgtgtt gtgtatgtgg aggacggtga cacgagtgtt ccacgggtgt taaatatggg 3060 tcccaaacat aagaatggaa gacgccttgc tgtaacatca tgcccaccac atcttatgaa 3120 gtattttgag gattgttatc aatgtttgaa tgaagatgat ggtttttcct ttcattgctt 3180 tcctttgaat tccagagagt gcttgattcc tggccatctt tatgttgctg atcttaagtt 3240 tcagaggaca aatggtgctt atccccatga gattccctac aggaagaagt gggctgattg 3300 gacaatggat ttagtttgct tacagttaga tcgtgatttt ttcgagacca gggtgttttt 3360 gtgcaagagg caatgctgta agaatacatg gactgtctgt gatacaactg agcataatgt 3420 tgcaatccgt tgtggagatg caacctttca aaaggatgtc tgggttgatg gtcctatcac 3480 ctctagtgga cattggcaaa gaaatttgct gcgcgttgag atccccatcc gtcctggcca 3540 ttgtggtagt cccttgattt gtaagcatgg tatttgtggt atggcaagtg tgtctgatga 3600 gcaatctgtt tcttggttta cgtgtgtgtg gatggctgat gaatatgaag atgaagatct 3660 gtacccgttt gctgaagagc aaggcccaga tgctgatgaa caaggtttaa gggacattat 3720 gaataatgtt gcaaaagaac tgggccactc atttggagcc tccacaatgg atggcgttgc 3780 tgatgtgata gaggatgctg taaagaaata tacttttgat aaagctaatg cccagtacac 3840 ctatgtgaag ctagttctta aatggttggt caagaccatc actgctgtta ccatgattgc 3900 tcggtctgat ccgaaccatc gcattgaagt tgcatctggc ctaggcgtta tttttggtat 3960 agatctctta accacagaac cttttgagtg gctcaaatca aaagtgttgg actgcctggg 4020 ttataaaagt gcaagtgaac aaggtatgaa tgattttgtt gactggataa aggattttaa 4080 tgctgcttgc actgcagcaa aaggacttga gtggatagga cagaagatca tgcagtttat 4140 tgattggctc aaaacattat ttaagaaaga gaacccagcc aggacaaagt tcatgcaaca 4200 acttgaagat ctaccactta tgatgaagca tatagattcc atttctgctg cacgtggcaa 4260 gtatccagag tctgaaatta gaaaggtttg tgaggccatt gttgacttga agagaggtgc 4320 agatttgttt ggggttgaac gcaatacagc cacaacacaa atagttaagt actatcaaaa 4380 ggcacagaac attctcagtt ctatgactaa gggccgtact gaacctgtgg cagttttaat 4440 tcatggggct cctgggttag gtaagtcatt agtgacagaa gttgtcggac ggcaattgtc 4500 acgctactat ggagccggac ggccttactc attgccacct gatcccaagc attttgatgg 4560 gtatgctcaa cagcccgttg tgatcatgga tgacttgggt cagaacccag atggggaaga 4620 ttgtaaactg ctgtgtcaaa tggtatcttc aacagaattc ataactccca tggcctcctt 4680 agacgataag ggaatgcctt ttacatctga ttttgtgctt gcgtcaacca atctttcagc 4740 ccttaaacca cccactgtgt ctgagcccaa tgccattcgg cggcgattct ttattgatgc 4800 ggccatcgaa ccctcaaaag attatctcaa accaagtggg catcttgatg cagacacctc 4860 gcttacccag tgtgatcatg ctgctgtgaa ttttgcaaaa tgttgtcctc ttatttgtgg 4920 aaaggcttta gttttgaaag atcttagaac tggtgttaag tattctgtag atgaggtagt 4980 aacaaaactt aagagagaaa gggaaacccg ccatgcctgt gggagcaaac ttgatgcaat 5040 ttttcaagga ccgtatgaaa catgcccctc ctatgagtca tggctccaaa cacagtatga 5100 taggatgccg cctgtgctaa agacctttga agaacagaag aatgaaggca tcctgagacc 5160 aaccccaaaa gaggtcattg atttgattcg tgccgtccca acacaagaag taatagatta 5220 ttgcaaatca cagggttggc ttcttccaga tgatgtggtc tctatacgta tagagaaaga 5280 tataaataaa atggttacta atattaccaa gggcttgtct attattgctt cactttgtgc 5340 cattacaggg tttgtttatt taatgtacac tgtttttgca aagggtcagg gtgcatactc 5400 tggacaacca acaacaccat taaagaaacc agagttgagg agggtggcca aaactcaggg 5460 accggatatg gagtttgtaa ataaattatt taagcagagc attttttctg ttaagactaa 5520 gaagggctgg ttttctggac ttggcttgca tactcagtgg cttttgcttc cgaaacattc 5580 tgaacccgag gatgttatag aaatgaatga tgtagagtat aagtgtttag atatagtgat 5640 tttagaaaat agtcagggta gtttagagtt agttgcagtt aagatagata ggcctgttaa 5700 ttttagagat attcgtaagt atattccaga gcattttcaa agagagtctg ggtgttttct 5760 tgctgttgat aacccccatt atgaaaggat gtttgcacct gttggaactg tttctatgtt 5820 tggattttta aatttgtcct ataaagccac ctataatacc tgccattatc attatccaac 5880 aagatcaggt caatgtggag gtgtgatatg caaggctggt aagatcatag ccatgcatat 5940 tgggggagat ggtatcagcg gctatggcgc cattttaaca aaaaggattg tggcagcaat 6000 tgagcaaggt gccataacta agatggagga aactcagact acccctatta atatatctac 6060 taaaaccaaa ttgcacccaa gtgttttctt tgatgtcttt ccaggtgaga aggaacccgc 6120 tgctttacat cccaaggata agagattgga agtggatctt gaacaggcta tgttttctaa 6180 atataaaggc aattgcagtg tgatacggcc aactccaaat atgttagttg ctgtagacca 6240 ttatgtttca caaattcaac caatcatgcc aactaatttg atagagcctc tatctttgga 6300 ggaagtggtt tatggcattg agaatcttga tggattggac ttggccacct cagcaggata 6360 tccgtatgtt gtgaagggag tgagaaagag agatctgatt ccacccaagg gtgagccctt 6420 aacaaagcta gtgtcagcac ttgatttgca tggatacggc caaccatttg taacctatat 6480 aaaagatgag cttagaccaa agaaaaagat agccctggga aagtctaggc ttattgaatg 6540 ttcctcactg aatgatacca tcctgatgaa aagagtttat ggccgtttat tccaaacatt 6600 tcatgcaaat ccaggaacca ttacaggatc agctgtaggg tgtaacccag atgtggattg 6660 gtcaaagttt tatgcggaga tggctggaag acctcttata gcatttgatt attcaaattt 6720 tgatgcatca ttatccccag tttggtttga atgtttaaaa ttagttttga gtaagttagg 6780 ttatagggat gatcccaaga tatgtgataa gattaatgca gatgtgcttc cctcctggat 6840 tattgatcat gtgaccttta gttctcattt atataagaat aagtattatg aagtggaagg 6900 agggatgcca tctggctgct ctgggacatc aatttttaat tccattatta ataatataat 6960 tattaggact ttagtgttag atgtttataa aggaatagat ttggatcagt tgcgcatggt 7020 ggcatatggt gatgatatcg tagctaccta tcccttccag ttggatgctg ccgctttggc 7080 tgaggccggc aaagtttatg gattgcagat gactcctcct gataaagatt cagatttcaa 7140 tgataccacc tgggacaatg taacctttct aaagagaaca ttcgtccctg atgaggagtt 7200 cccttttctg atccatccct gctttccaat gaaggagatt tacgagtcca tccgttggtc 7260 tcgttctgct gcagcaactg aagaacacgt ccagtcgttg tgttatcttg cctggcacaa 7320 tggccgttct gtgtatgagg attttattga gaaaattcgc actgtgcctg ttggtagagc 7380 cttgaaactc ccttcgtaca gtgtgctgcg ccagcaatgg cttgatcagt tttaggtagt 7440 caattgttag tgtagctttt aggcttaagt ttagttgtta agtttaagca gtttgttata 7500 gtaagttaag tttaggttta agttagtata ataagcaagt gtaccccttt cctttcaatc 7560 acaatcagcc cagggggggt attttaaatt ttatgtttga ttgatgcata aaaaaaaaaa 7620 aaaaa 7625 //