ID HQ595340; SV 1; linear; genomic RNA; STD; VRL; 7753 BP. XX AC HQ595340; XX DT 16-AUG-2011 (Rel. 109, Created) DT 16-AUG-2011 (Rel. 109, Last updated, Version 1) XX DE Bat picornavirus 1 strain NC16A, complete genome. XX KW . XX OS Bat picornavirus 1 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; OC Picornaviridae. XX RN [1] RP 1-7753 RX DOI; 10.1128/JVI.02364-10. RX PUBMED; 21697464. RA Lau S.K., Woo P.C., Lai K.K., Huang Y., Yip C.C., Shek C.T., Lee P., RA Lam C.S., Chan K.H., Yuen K.Y.; RT "Complete genome analysis of three novel picornaviruses from diverse bat RT species"; RL J. Virol. 85(17):8819-8828(2011). XX RN [2] RP 1-7753 RA Lau S.K., Woo P.C., Lai K.K., Huang Y., Yip C.C., Shek C.T., Lee P., RA Lam C.S., Chan K.H., Yuen K.Y.; RT ; RL Submitted (08-NOV-2010) to the INSDC. RL Microbiology, The University of Hong Kong, University Pathology Building, RL Queen Mary Hospital, Pokfulam Road, Hong Kong, China XX FH Key Location/Qualifiers FH FT source 1..7753 FT /organism="Bat picornavirus 1" FT /host="Miniopterus pusillus" FT /strain="NC16A" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="19-Dec-2008" FT /db_xref="taxon:1074863" FT 5'UTR 1..410 FT CDS 411..7562 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G0Y2E0" FT /db_xref="InterPro:IPR000081" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR002527" FT /db_xref="InterPro:IPR003138" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="UniProtKB/TrEMBL:G0Y2E0" FT /protein_id="AEM23657.1" FT /translation="MVFFFASTKTNETAESKDKVPKPRLMSQGPLCLDMGEELLIVTHY FT YILFLKENPLIIPRIHHPGNTEPKRVRNCGAAASRTSTESHKNQSANAGGNITQINYYG FT SDYASAHGLASTQMDPEKFTRPLADMAAAAGPALKSPNVEELGYSDRIMQLTAGNSTIT FT TQEAASAVVAYGVWPTHDVGVGEAVDMQTTPGPAVERFYTLDSWYWTKGSAQEGRAYKL FT PAALTDLGVFGQNCQFHFLCRSGFCVHVQVNATKFHQGMLLVAAIPDCQVTEHGMNSAY FT PLSAVDFVNYPKHQLTLYPHQLINLRTNNSATLILPYVSASPAESPLTHNNWTIYITPV FT VPLDYVTGSSTNVPVTISIAPMAASFSGLRNAVQPSFSVHTQGVPVFEVPGSSQFVTTL FT RNSGYPMLPDYEETPSHHIPGRVTNLLEVMQVDTFCNPVNSTNAAVSFTLDVSNNSVSN FT AAIAHWDMDMGSVLFSTTYMARCAKWYSQHRGGIRVTFMFCGSAMATGKLLLAFTPPGG FT SAPATRRDAMLGTHEIWDLGLQSSITLVVPWISQTAYRFNQPSTSADGNVLTYRGYISV FT FYQTAVVVPVGAPSTCQIAVLASVTKDFVMRCPTDSAYFQGIGDELGKVITEAAQHALQ FT PLDVKPVNGPSVPAGLSIQVGDASALTAPETGATAATEAPSTLETRNVPVTYSARETEI FT ENFFSKYALFYDGMIDYNEAKILKVPLRFSEEATTQLAVISKYRMFTYLRCGFDIVINV FT CEIGSAGPKSAHATAQVLYCPPGCPVPADHTSAEWFIPTTPCVYQKSSADAPISLRLPF FT MGPASAYCVTYDGYPNYRIGQKYGEFPGNDFGTICFRFINLTGGNQVQDIKHRILMLAR FT PTQVSAFCPRPIVSLAQHRPAAVTNGRIAYVRDGPDDVVPEGDGTDRVLRAANCGPRLK FT VGKRMNPECCPPHLYRFFEDCYQCWDVDNEVSFHCFPLSPRECLIPAHLYVADLVFSKH FT IAGPRAEIPYRKKWADYTMDLVCLELAEDYFQTIVTLCERHVCKNTWTVCDTTEHAVAI FT RCGETFFQKDLWVDGKTDDEPGHWQRNLLRVNAPIQPGHCGAPLICKHGICGMATVSDE FT QYTSWFTCVWMADEFGTTVDPIAFEQGPDAEEQGLRDMMNDVARELGHSFGDSTMTGVA FT NVIEDAVKQYTFNKANAQMSYVKQIIKWLVKVIASVTMIARAAPDRRIETAAGLGVIFG FT IDLLTTDPFEWLQDKIMNCISLRSARAQGFSDGLSNWIKEFNAACTAAKGLEWIGIKLS FT QFIDWLKNLFKKENPARTKFMQQLEDFPLMMQHLDKIAESRGKYPEEQIRKVCEGIKQL FT KQGADIFGVERNAATVQIVKYYQKAQSILQSLTKGRTEPVAMLVHGTPGSGKSLATEIV FT GRLLSQRYGGSRPYSLPPDPKHFDGYAQQPVVIMDDLGQNPDGEDCKLLCQMVSSTEFI FT VPMAALEEKGLAFTSDFVLASTNLNQVRPPTVSEPQALKRRFFVDVNIEVQKDYMVQNG FT KLAADVALTPCNHQAANFKVCCPMICGKAVLFRDVDSGVRYSLDEIVSKLIRERDARKS FT CGSKLDALFQGPNDYQTCVSDVWLESDYDRMPPVLKTYEELRKEGIERPAPKEVLDLVR FT AVPTPEVFDYCRVQGWMLPVEVRHIEIKRECSEMVSHIAKGLSILASLCAISGFVYLMY FT TVFAKGQGAYSSAPKPELKKPELRRVVKTQGPDMEFVNKLFKQSIFSVKTEKGWFSGLG FT LHSQWLLLPKHSEPGYEIEMNGVIYKCLDIAYLENGQGSLELVAVKIDRPVNFRDIRKY FT LPEHFQRESGCFLAVDNPHFERMFAPVGTVSMFGFLNLSYKATFNTCHYHYPTRSGQCG FT GVICKAGKIIAMHIGGDGQSGYGAILTKRIVAAIEQGEIVKMEKTETSPINLSTKTRLH FT PSVFFDVFPGEKEPAALHPKDPRLEVPLEEALFSKYKGNCDVKEPTPNMLIAVDHYVSQ FT IQPIMPENLTEVLTLEEAVYGIEKLDGLDLATSAGYPYVVKGIKKKDLIPPRGEPLDKL FT VEALDLYGYGKPFVTYIKDELRPKKKIAAGKSRLIECSSLNDTIRMKRVFGHLFQTFHA FT NPGTVTGSAVGCNPDVDWSKFYAEMAGRPLIAFDYSNFDASLSPVWFKCLKLVLLKLGF FT KDDIDKYIEFKSVPSWIIDHITFSSHLYKDKYYEVEGGMPSGCSGTSVFNSIINNIIIR FT TLVLDVYKGIDLDQLRMVAYGDDIVATYPFQLDAAALAEAGKVYGLQMTPPDKDSDFND FT TTWENVTFLKRTFVPDEEFPFLIHPCFPMKEIYESIRWSRSAAATEEHVQSLCYLAWHN FT GRSVYEDFIEKIRTVPVGRALKLPSYSVLRQQWLDQF" FT mat_peptide 411..632 FT /product="L" FT mat_peptide 633..827 FT /product="VP4" FT mat_peptide 828..1556 FT /product="VP2" FT mat_peptide 1557..2258 FT /product="VP3" FT mat_peptide 2259..3146 FT /product="VP1" FT mat_peptide 3147..3830 FT /product="2A" FT /note="alternate cleavage site" FT mat_peptide 3147..3809 FT /product="2A" FT mat_peptide 3810..4169 FT /product="2B" FT mat_peptide 3831..4169 FT /product="2B" FT /note="alternate cleavage site" FT mat_peptide 4170..5177 FT /product="2C" FT mat_peptide 5178..5522 FT /product="3A" FT mat_peptide 5523..5591 FT /product="3B" FT mat_peptide 5592..6140 FT /product="3C" FT mat_peptide 6141..7559 FT /product="3D" FT 3'UTR 7563..7737 XX SQ Sequence 7753 BP; 1935 A; 1651 C; 1825 G; 2342 T; 0 other; gaaacccgta tacaccggac cttttctccc ctccctctcc acttaccttt ttcccctctt 60 cggcatgaaa caaggattat tcaagtggaa acgcgattta atatgcggct ggccaccgcg 120 gaataacggc aattgtgtat ctgctggaag ccaagcctgc ctagccgata gcccttgacc 180 gggtgtgtag gatagcccag gaaccagcaa tacgcgacag gttatggtag agtagatacc 240 tagccagggg caatgggact gcattgcata tccctaatga accattgaga tttctctggt 300 cattacccgg tgatggttac tagagggggg cctctagtac tagatctata ctgcctgata 360 gggtcgcggc tggccgacca tgacctgtat agtcagttga tttgagcaat atggttttct 420 ttttcgcttc taccaagact aatgagactg ctgaatccaa agacaaggtg cccaagcctc 480 gcctcatgtc ccaaggccca ctttgccttg acatgggaga agagttattg atagttacac 540 actattatat actctttctg aaagaaaatc ctttgatcat ccccagaatt caccaccctg 600 gaaacaccga acccaagagg gtgaggaatt gtggggccgc tgcatcaagg acttcgactg 660 aatcgcataa gaaccagagt gcgaatgcgg gtggtaatat cacccaaatc aattactatg 720 gttcggatta tgcgtcggct cacggacttg cttcaaccca aatggatcct gagaagttca 780 ccagaccgct tgctgacatg gccgcagcag ccggtccagc acttaaatca ccaaatgttg 840 aggaacttgg ctactcagat aggataatgc aacttacagc aggaaattct acaattacca 900 cacaagaagc agcctcggca gttgttgcgt acggcgtttg gcccacacat gatgtgggtg 960 ttggtgaggc cgttgatatg caaactacgc ctggaccagc tgttgagagg ttttatacat 1020 tggattcatg gtattggaca aaaggctccg cacaagaggg tagggcttac aaattacctg 1080 ctgccttaac tgatctgggt gtgtttggtc aaaattgtca atttcatttt ctgtgtcgca 1140 gtggcttttg tgttcatgtt caggttaatg ccacaaagtt tcatcaaggc atgcttcttg 1200 ttgctgctat ccctgattgc caggttacgg agcatggcat gaattctgct tatcccctga 1260 gtgctgtgga ttttgttaat tatccaaaac atcaacttac attgtaccca catcaattaa 1320 tcaatttgag aacgaacaat tccgcaacgc tcattttgcc ttatgtgtct gcttcacctg 1380 ctgaaagtcc cttgactcat aataattgga caatatatat tacacctgtt gtgccattgg 1440 attatgtcac cggctcctcc accaatgttc ctgttacaat ttccattgca ccaatggcag 1500 cctctttttc tggtttgcgc aatgctgttc aacctagttt tagtgttcat acgcagggtg 1560 ttcctgtgtt tgaggttccc gggtcctcgc agttcgttac gacactgcga aactcggggt 1620 accctatgct gccagattat gaagaaacgc catctcatca cattcccggc cgtgtgacaa 1680 acctcctcga ggttatgcaa gtagacactt tttgcaaccc tgtgaattct accaatgctg 1740 ctgtttcctt tacattggat gtttctaata atagtgtgtc aaatgctgcc atagcccatt 1800 gggatatgga catgggaagc gtgctgtttt caaccaccta catggcaagg tgtgccaaat 1860 ggtactccca gcatcgtgga gggatacgtg tgaccttcat gttctgtggc tcagccatgg 1920 caactggcaa gttgcttctt gcattcacac cacccggcgg ttcggcgcca gccacccgca 1980 gggacgcaat gcttggcaca catgagatct gggatttggg cttgcaatcc tccatcacac 2040 tcgttgttcc gtggatctcc cagacggctt atcgctttaa ccaaccttca acttcagctg 2100 atggtaatgt tctcacatac cgtggttaca tttctgtttt ctatcagacc gcggttgttg 2160 ttccggtggg tgcaccttcc acctgccaaa ttgctgtgct ggcctctgtt acaaaggatt 2220 ttgttatgcg atgcccaaca gattctgcat acttccaggg tattggcgat gaacttggca 2280 aagtcatcac tgaagcagcc caacatgccc tgcagcccct agatgttaaa cctgtcaacg 2340 gacccagcgt cccagctggc ctgtccattc aggttggtga tgcatctgca ctaacagccc 2400 ccgagactgg ggcaacggct gcaacagaag caccctcaac acttgaaaca agaaatgtgc 2460 ctgttaccta ttcagccagg gaaacagaaa ttgaaaattt cttttcaaag tatgcccttt 2520 tttatgatgg aatgattgat tataatgaag ctaagatttt gaaggttcct ttgaggtttt 2580 ctgaggaggc aacaacacag ctggctgtta tttcaaaata ccgcatgttt acatatctca 2640 ggtgtggttt tgatattgtt ataaatgtgt gtgaaattgg atcagcgggg cccaagtctg 2700 cccacgcgac tgcccaagtg ctgtattgcc cccctggatg tcctgttcct gctgatcata 2760 cttcagctga atggtttata ccaactactc cttgtgtgta tcaaaagtca agtgctgatg 2820 cccccatttc tttgcgactt ccctttatgg gcccagcctc tgcttattgt gtgacctatg 2880 atggatatcc caattatcgt attggacaaa aatatggtga gtttcctgga aatgattttg 2940 gtacaatttg ttttagattt atcaatttga cgggcggtaa ccaagtgcag gatattaaac 3000 atcgcatttt gatgcttgcc cgacccaccc aggtctccgc cttttgcccg cgaccaattg 3060 tttcacttgc gcaacatcga cctgctgctg ttaccaatgg gagaattgca tatgttaggg 3120 atggacctga tgatgttgtt ccagaaggtg atggaaccga tagggttctt agagcagcaa 3180 attgtgggcc ccgtctgaag gtcggaaaga gaatgaatcc agagtgctgc cctccccatt 3240 tgtacagatt ttttgaggat tgttatcagt gctgggatgt tgataatgaa gtttctttcc 3300 attgctttcc tctttcccct cgtgagtgct tgattcctgc tcatctttat gttgctgatc 3360 ttgtgttttc caagcatatt gctgggccca gggcagagat accctatcga aagaagtggg 3420 ctgattatac catggatttg gtttgcttgg aacttgctga agattatttt caaaccattg 3480 ttaccctgtg tgaaaggcat gtttgcaaga acacctggac tgtatgtgac acaacagagc 3540 atgctgttgc cattagatgt ggtgagacct tctttcagaa agacctttgg gttgatggca 3600 aaactgatga tgagcctggt cattggcaac gcaatttact tcgtgtgaat gccccaattc 3660 aacctggaca ttgtggtgca cccttgattt gcaaacacgg catctgtggg atggcaacag 3720 tttctgatga gcagtacact tcatggttta cctgtgtttg gatggctgat gaatttggca 3780 ccactgttga tccaattgcc tttgagcaag gccctgatgc tgaggaacaa ggtctccgtg 3840 atatgatgaa tgatgttgcc cgtgagctgg gtcacagctt tggtgattcc accatgactg 3900 gtgtggcaaa tgtgattgaa gatgctgtca agcagtatac ctttaataaa gccaatgcac 3960 aaatgtctta tgttaaacag attattaagt ggcttgtgaa ggttattgct tctgttacaa 4020 tgattgcccg tgcggcgcca gatcgtcgca ttgaaactgc tgctggtctt ggtgtgatct 4080 ttggcattga ccttttgaca accgacccat ttgagtggct ccaagataag attatgaatt 4140 gcatttcgct tcgaagtgca cgtgcacagg gcttctctga tggtttgagc aactggatca 4200 aagagttcaa tgctgcctgt actgctgcaa aagggttgga gtggattggc attaagttat 4260 ctcagtttat tgattggctt aagaatttgt ttaagaaaga aaatcctgca aggaccaaat 4320 ttatgcaaca gttagaagat tttccgctca tgatgcaaca ccttgataag attgccgagt 4380 cacgcggcaa ataccctgaa gagcagattc gcaaggtttg cgaaggaatt aaacaattaa 4440 aacagggtgc agatattttt ggtgttgagc gcaatgccgc tactgttcaa attgttaagt 4500 attatcaaaa agcacaatcc atcctccagt cattgacaaa aggtcggact gagcccgttg 4560 ccatgcttgt ccatggcaca cctggctccg gcaaatccct tgccacagaa attgttggcc 4620 gcctgctttc ccaaaggtat ggcggctccc gaccctattc attgccacca gaccccaaac 4680 attttgatgg atatgcccaa cagccagttg tcatcatgga tgatttgggc cagaaccctg 4740 atggggaaga ttgcaagttg ctttgccaga tggtttcttc aacagaattt attgttccca 4800 tggctgctct tgaggagaag ggtcttgcct ttacttcaga ttttgtgctt gcctccacca 4860 acttgaatca ggttagacct cccactgtgt cagaacccca agcccttaag cgtagatttt 4920 ttgtggatgt taatattgaa gttcagaagg attatatggt tcaaaatggt aaacttgctg 4980 ctgatgttgc cttgaccccc tgcaatcatc aggcagcaaa ttttaaggtt tgctgtccta 5040 tgatttgcgg aaaagctgtt ttgtttcgtg atgttgattc tggtgtgcgc tattctcttg 5100 atgagattgt gtccaaatta attagagaga gagatgcccg caagtcatgt gggagtaagc 5160 tggatgccct tttccaaggc ccaaatgatt atcaaacctg tgtgagtgat gtgtggcttg 5220 agagtgatta tgataggatg cctcctgtgc ttaagacgta tgaagaattg agaaaggaag 5280 ggattgaaag gcctgcgcca aaagaagtgc ttgacttggt tcgtgctgtg cccaccccag 5340 aggtttttga ttattgtcgg gttcagggtt ggatgctacc cgttgaggtc agacacattg 5400 aaataaagag ggaatgctca gaaatggttt cgcatattgc gaaaggtttg tccatccttg 5460 cctccttgtg tgcaatttct ggttttgttt acttgatgta cactgtcttt gcaaaaggcc 5520 aaggtgccta cagctctgcc cccaaacctg aactcaagaa accggaattg cgtcgggttg 5580 tcaagacaca aggacctgac atggaatttg tcaataagct gttcaagcag agcattttct 5640 ccgtgaagac ggagaaaggg tggttctctg gcttgggctt acactctcag tggcttttgc 5700 ttcccaaaca ttctgagcct ggatatgaga ttgagatgaa tggtgtgatt tataagtgtt 5760 tagatatagc ttatttagaa aatgggcaag gtagccttga attagtagct gttaagatag 5820 ataggcctgt taattttaga gatattagga aatatttgcc agagcatttt caaagagagt 5880 cgggctgttt tcttgctgtt gataatcccc attttgagag aatgtttgct cccgttggaa 5940 ctgtttctat gtttggcttt ttgaatttgt cttataaagc aacctttaat acatgccatt 6000 atcattaccc cactcgttca gggcagtgtg ggggggtcat atgcaaggct ggcaagatta 6060 tcgctatgca cattggtggt gatgggcaga gcggttatgg cgctattttg acaaaacgca 6120 ttgtggctgc cattgaacaa ggtgaaattg tcaagatgga gaagacagag accagcccca 6180 taaatctttc aacaaagacc cgcttgcatc cgagtgtgtt ctttgatgtt tttccaggtg 6240 aaaaggaacc agctgccctt catccaaaag atccccgctt ggaggttcct cttgaagaag 6300 ccttgttttc aaagtataaa ggcaattgtg atgttaagga gccaacaccc aatatgctca 6360 ttgctgtgga ccattatgtt tcccagattc aacctatcat gcctgagaat ttgactgaag 6420 ttttgaccct tgaggaggcc gtttatggca ttgagaagct ggatggtctt gatttggcca 6480 cttctgctgg ttatccctat gttgtgaagg gcataaagaa gaaggatttg attccacctc 6540 gtggtgaacc acttgataag cttgttgagg ccctggatct ttatggttat ggcaaaccct 6600 ttgttacata tattaaagat gaattaagac ccaagaagaa aattgcagct gggaagtcaa 6660 ggctgattga gtgttcatca ctcaatgata ccatccgcat gaagcgggtc tttggccacc 6720 tcttccaaac ctttcacgca aatcctggta ccgtgactgg ctctgctgtt ggctgcaatc 6780 ctgatgttga ctggtctaag ttttatgctg aaatggccgg tcgccccctt attgcctttg 6840 attattccaa ttttgatgcc tctctttctc ccgtttggtt taagtgtttg aagctagttt 6900 tgcttaagtt aggctttaag gatgatatag ataagtatat agagtttaag tctgttccta 6960 gttggattat tgatcatata acctttagtt cccatttgta taaggataag tattatgagg 7020 tggagggagg aatgccttct ggctgctccg gaacctctgt ttttaattct attattaata 7080 atataattat taggacttta gtgttagatg tttataaagg aatagattta gatcagttgc 7140 gcatggtggc gtatggtgat gatattgtag ccacctaccc tttccagttg gatgctgccg 7200 ctttggctga ggccggcaaa gtttatggat tgcagatgac tcctcctgat aaagattcag 7260 attttaatga taccacctgg gagaatgtaa cctttttaaa gaggacattc gttccggatg 7320 aggagtttcc ttttctgatt catccctgct ttccaatgaa ggaaatttac gagtccattc 7380 gttggtctcg ttctgctgca gcaactgaag aacacgttca gtcattgtgt tatcttgcct 7440 ggcacaatgg ccgttctgtg tatgaggatt ttattgagaa gattcgcact gtgcctgttg 7500 gtagagcctt gaaactccct tcgtacagtg tactgcgcca gcaatggctt gatcagtttt 7560 aagtagttaa ttgctagtgt agtttttagg cttaagttta gttgttaagt ttaagcagtt 7620 tgttatagta agttaagttt aggtttaagt tagtgtaata agcaaatata ccccttccct 7680 ttcaatcata atcagcccag gggggggtat tttaaatttt atgtttgatt gatgcataaa 7740 aaaaaaaaaa aaa 7753 //