ID HQ593111; SV 1; circular; genomic DNA; STD; VRL; 7408 BP. XX AC HQ593111; XX DT 04-MAY-2011 (Rel. 108, Created) DT 04-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Banana streak CA virus, complete genome. XX KW . XX OS Banana streak CA virus OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7408 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT "Molecular characterisation of six badnavirus species associated with leaf RT streak disease of banana in East Africa"; RL Ann. Appl. Biol. 158(3):346-353(2011). XX RN [2] RP 1-7408 RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.; RT ; RL Submitted (07-NOV-2010) to the INSDC. RL Centre for Tropical Crops and Biocommodities, Queensland University of RL Technology, 2 George St, Brisbane, Queensland 4001, Australia XX FH Key Location/Qualifiers FH FT source 1..7408 FT /organism="Banana streak CA virus" FT /host="Musa sp." FT /mol_type="genomic DNA" FT /country="Kenya" FT /collection_date="Apr-2009" FT /db_xref="taxon:1016852" FT CDS 515..1045 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF I protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:F5AY28" FT /protein_id="AEC49885.1" FT /translation="MVEKTWDQKFQEFLDSSELTQAQLEYLDLADSKVSNKDLAHNLRI FT NTYRLSLTGKVLWTSERKNRELILQVIEEQKDQRRQLEELQNLSKIVRNQRSDLKRALE FT KLDVLSEELQALRKDYLKRRPLNKEDVEDLVVRISEQPKFIEKQTEALTEELTREVQHL FT KGIIHDFERKLMG" FT CDS 1042..1446 FT /codon_start=1 FT /product="virion associated protein" FT /note="ORF II protein" FT /db_xref="UniProtKB/TrEMBL:F5AY29" FT /protein_id="AEC49886.1" FT /translation="MSNTVTNSAIYQQAITGTTGDWESPGVGIAEKGSVSNTQITRQLN FT TVIYLIVRLQQENLALKDTIADIQNRVKTIEGKSGTTSSGTPTLKSEIDSINNKLTRIE FT QIKSSQPKKDSGTSAAKVFQDPYNLLRNLK" FT CDS 1446..6956 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes movement protein, coat protein, aspartic FT protease, reverse transcriptase and RNase H; ORF III" FT /db_xref="GOA:F5AY30" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR009007" FT /db_xref="InterPro:IPR013084" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="UniProtKB/TrEMBL:F5AY30" FT /protein_id="AEC49887.1" FT /translation="MASRPRVTGSGSRTQTVAEAGTPLIDDQIREYRSSRRAAYEAQRV FT ARQAGNIIGRIVGRQPREHTLSMVVNPNSELSRSLAHRARTVPGEVLYMTQRDSPVNRV FT YRNRTEERMLVTNGQQDRSFIYPESFEELVNAGFEYIHLGVLQVRLQIMHRTYAGTMAL FT VVFRDTRWTQEGDEDRSIIAAMEADLSQGHQLIYVIPDIMMTIKDFYQHVQISILTKGY FT QGFQGEANLLITRSCRCRLTNVPNVGFAYNIQKVVEYLNSKGVKAIQAQKLSTKKFQGT FT EWNIKPSNVVVPMQPASMITRVNYDSSRSIRFGDYQASTSTAPPRYNNDGDSDDEIQET FT INMLYIEDDLEDDYPAAEEEQVLLEDMVGEEDIISKFLEELELSDDDTKSQVSQQVMNL FT EEEDFPQLQEIERLLSTTAESAISSYRPPDVDMSGIAPGYAPATSTTGWAGNNQFPFTT FT RRPRRWDSNNEFYMLPPAQSKQGAMFIMPLDFDVKVFERWESITLLHMTERSFDNADDK FT MRYMENLLGEDEKKHFIEWRMKYTTEYETMKAQALGDQGTQNIINQMRLIFFLENPQVG FT TTTSQDAAYKTLKSLVCTEMTDTAIYRYMNDYFHLSAKTGRAWATEELSKEFFTKLPRG FT LGDEVEKAFKEKHPSNTIGVTARITFTKRYLKELCEKVALQKSIGKMDFCRNTPVHGLY FT GRERSHKRYGARKSTSYKGKPHKSHVRIGKKKHLAARKRNCRCYACGEEGHFASECTNQ FT KKIIDRVRVLDSLDLEDGLDVVSVGFDEDDVSDIYSIDEEAENNKFTNEDMEDFKNYEV FT YMMEAEELDEPKEYLVGEPSEWRSKMRVSRRQYYCKHDWKFEESHRTICRACGSEAVHK FT HRIDCLKCDMTICLMCQPWFYKDINTEEVKKTRVRIERVIDWKEIALRQHEVLKTSIAN FT EKQLSEENEELKEKIKELKGKELITVEEISEEEGAAMIEKIENLEKENELLNAIITQKE FT EEEVGYLNKIQELEERIRKLEQQMKYRDEEMQVILKQQREEKVNALEEVSVNALRPRNN FT HLNIRCEVEIKEKKVILNAILDTGATVCVADSRMIPAEMREQAKNRIIIRGVNGVTEVN FT EVTAIGRLWVGKQWFTLPQTFIMPTLGDGVHMIIGMNFIRTVGLRIENGEVTIYKIMTT FT VPAPPIAHDLNYIEELELELYEYYDICATQNQRGEIAEEFIEPAMMTRMKKLGYIGEEP FT LKHWTKNQVKCRIEVKNPDMIIEDKPLKHVTPAMKETMAKHVKKLLELKVIRPSQSKHR FT TTAMIVESGTEIDPVTGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIKRIGNAKI FT YSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDNCFRGT FT EKFIAVYIDDILVFSETVQQHKEHLKKFMEICERNGLVLSPTKMKIGTRQVDFLGATIG FT NSKIKLQPHIIQKIAETKDEELKEFRGLRRWLGILNYARSYIPNLGKILGPLYSKTNPN FT GERRMNRQDWVIVDKIKDLVKNLPELELPPNNAMMIIETDGCMEGWGGVCKWKEQSGQP FT RWSEKICAYASGKFNPIKSTIDAEIQAVINSLDKFKIYYLDKKELIIRTDSQAIVSFYK FT KSSDHKPSRVRWLAFTDYITGTGLDVKFEHIDGKDNVLADTLSRLVKIICHKEKHPSET FT ILINVAEEILQKGSIGAKRKLGEMISGYEAWMTRIQEHKIKTLTLIEKPIFKCGCRKPA FT RLHTSRTSRNPGREFYSCENKACFTWVWKDQIDEYVQEVMTWNDQVSQLSEEPEGHNEG FT CTIEDAFDLLDVSNDDQWARS" XX SQ Sequence 7408 BP; 2687 A; 1271 C; 1762 G; 1688 T; 0 other; tggtatcaga gcaaggttag ttcttatggc tttcatgggg taaaaccctt aggtaggagc 60 cgatgggctc tgctattttt gatttgggtt aatggttgta caagttctat gatagataag 120 tcgaatggag caacacttat gtatgaaaaa tgattgccta tgataataga tgggctaagg 180 tgtaaggaaa aatgatcaca aggtcgattc tatttgtttt ccaaaagatc atgcctaccc 240 aagaagtacc tatgagaggg aagatagtgg ttctcgcatg agtgaggaag aaatatcata 300 gatagacagt gaactccgtg aactacttac atgcttagct gatatcctat ttagtaaggc 360 agacaccgtg aagtagtaca tgataagctc cagtaagacg taatatcatt ggaacctctg 420 tgactgacca ggtacgccaa tagaaaatag tatcccggag ggctactcct accttgttta 480 tcataagaaa gtcatccacc ttgcaaaacg gtttatggtt gagaaaactt gggatcaaaa 540 gttccaggaa ttcttagatt catctgaact tactcaagct caacttgagt acctagatct 600 agctgactct aaggtctcaa acaaagattt ggctcataac ctgagaatca atacttatcg 660 actaagcctg accggtaaag tcctttggac ttcggaaagg aagaatcgtg agttaatatt 720 gcaggttatc gaagagcaaa aggaccagag aaggcaatta gaagaattgc aaaacctcag 780 taagattgtg cgcaatcaac gtagcgatct gaagcgggct ctcgagaagt tggacgtctt 840 gtctgaggag ctccaagctc tcaggaaaga ctatctgaag agacgaccct tgaacaaaga 900 agacgttgag gacttagtcg tgcgaatctc tgaacaaccc aagttcatag agaagcagac 960 tgaggctctg actgaagaac tcacaaggga ggttcagcat ctgaaaggaa ttattcatga 1020 ctttgagcga aagctcatgg gatgagtaat acggtgacaa actctgctat ttaccagcag 1080 gctatcactg gtacaaccgg tgattgggaa tctccaggag ttggaattgc tgagaaggga 1140 tctgtgagta acacccagat cacaaggcag ttgaacacgg tcatatactt gatcgttagg 1200 ctgcaacagg aaaatcttgc tctcaaggac acgattgcgg atattcagaa tcgtgtgaag 1260 actattgaag gcaaatcggg gactacctca tctggcaccc caacactgaa aagtgagatt 1320 gactccatca acaacaagct cacaagaatt gagcaaatta agtcaagtca accaaagaag 1380 gatagtggca catcagccgc caaagtcttc caagacccat ataatctgct cagaaatcta 1440 aagtaatggc atcaagaccc agagtgactg gttctggctc cagaacccag accgttgctg 1500 aggcaggaac acctctgatc gatgatcaga tcagggaata tcgaagctcc agaagagcag 1560 catatgaagc gcagagagtt gctaggcaag ctggcaacat cattggaaga attgttggaa 1620 ggcaaccaag agaacatact ctctcgatgg ttgtaaatcc aaactcagag ctaagcagaa 1680 gccttgcaca tagggctaga acagtaccag gagaagtact gtatatgact caaagagaca 1740 gtcctgtcaa cagagtatac agaaacagga cagaagaaag gatgctcgta accaatggac 1800 agcaggatag atctttcata tatcctgaat cttttgaaga gctagtcaat gcaggatttg 1860 agtacatcca cttgggtgta ttacaagtta gactgcaaat tatgcacaga acatatgctg 1920 gaacaatggc tctagttgtc ttcagagaca ctagatggac acaagaagga gatgaagata 1980 gatccattat agctgcaatg gaagctgatc tatcacaagg ccatcagttg atatatgtca 2040 tcccagatat tatgatgaca ataaaggatt tctatcagca tgtgcaaatc agtatcctga 2100 ctaaagggta ccagggattc caaggagaag caaaccttct aatcacaaga agttgcagat 2160 gtaggctaac caatgtgcca aatgttggtt ttgcttataa tattcagaag gttgttgaat 2220 atctgaattc aaaaggggta aaggctatac aagcccagaa gctgagtaca aagaagttcc 2280 aaggcacaga atggaacatc aagccatcaa atgtggttgt gccaatgcaa ccagcaagta 2340 tgatcaccag ggtcaattat gatagctcca gaagtatcag atttggtgat tatcaggcta 2400 gtacatccac agcaccccca agatacaata atgatggtga ttctgatgat gaaatacaag 2460 agaccatcaa catgttatat attgaagatg atcttgaaga tgattatccc gcagctgaag 2520 aagaacaagt tcttcttgaa gacatggtgg gagaggagga catcatttca aaattcctcg 2580 aagaacttga gttatccgat gatgacacta aatctcaggt gtcacagcaa gtgatgaact 2640 tagaagaaga ggatttccct cagctacaag agattgaaag gttgctatca acaacggcag 2700 aatcagcaat aagctcatac aggccgcctg atgttgatat gagtggaata gcaccaggat 2760 atgcaccagc aacgagcaca actggatggg ctggaaataa ccagttccca tttacaacaa 2820 gaagaccaag aaggtgggat tcaaacaatg agttctatat gctaccacca gcacaaagca 2880 agcagggagc aatgttcatc atgccccttg attttgatgt taaggtattt gaaagatggg 2940 agagtatcac cctcctacac atgacagaga gaagctttga caacgctgat gataaaatga 3000 gatacatgga gaatctgcta ggagaggatg agaagaagca tttcattgaa tggagaatga 3060 agtatactac agagtatgaa acaatgaagg ctcaagctct aggagatcaa ggaactcaga 3120 atattatcaa tcaaatgaga ttaatattct tcctagagaa tcctcaagtt ggaacaacta 3180 catcacaaga tgccgcatac aagacattga agagtctggt ctgtacagaa atgacagata 3240 cagcaatcta tagatacatg aatgactact tccatttgtc agccaagaca ggaagagcat 3300 gggcaactga agaattatca aaagaattct ttacaaagct accaagagga cttggtgatg 3360 aagttgaaaa ggcattcaaa gaaaaacacc ctagtaacac tattggggtt acagcaagaa 3420 tcacatttac caagagatac cttaaagaat tatgtgagaa ggttgctctg caaaagagta 3480 taggaaaaat ggatttctgt agaaatacac cagtccatgg attatatggc agagaaagat 3540 cacacaagag gtatggagca aggaagagta catcctacaa gggaaagcca cacaaatccc 3600 atgttaggat tggaaagaag aaacaccttg ctgcaagaaa aagaaactgc agatgttatg 3660 catgtggcga ggaagggcac ttcgcaagtg agtgcacaaa ccaaaagaag atcattgata 3720 gagtgagagt cctggattca ctggacttag aagatggttt ggatgtggtt tcagtcggct 3780 ttgatgaaga tgatgtctca gacatatact caattgatga agaggctgaa aacaacaagt 3840 ttacaaatga agatatggag gacttcaaaa actatgaagt ctatatgatg gaagcagaag 3900 agcttgatga accaaaggaa tatctagtcg gagaaccatc tgagtggaga tcaaaaatga 3960 gagtctcaag gagacaatat tattgcaagc atgattggaa gttcgaagag agccacagaa 4020 caatatgtag agcatgtgga tctgaagcag ttcacaaaca cagaatagat tgtcttaagt 4080 gtgatatgac aatctgttta atgtgtcagc catggttcta taaagacatc aacactgaag 4140 aagtcaagaa gacgagagta aggatagaga gagtgattga ttggaaggag atagcactaa 4200 ggcagcatga agtgctaaag acaagcattg caaatgagaa gcagctctca gaagaaaatg 4260 aagaattaaa ggagaaaata aaagagttaa aaggaaagga gctgatcaca gttgaagaga 4320 tatcagaaga agaaggtgca gcaatgatag agaagataga aaatctggaa aaagagaatg 4380 agctacttaa tgccataata actcagaaag aagaagaaga agttggatat ctcaacaaga 4440 ttcaagagct agaagagaga atcagaaaac ttgagcaaca aatgaagtat agagatgaag 4500 aaatgcaagt aattctcaag caacaaaggg aagagaaagt aaatgctctt gaagaagtat 4560 cagtaaatgc tctcagacca agaaacaacc atctcaatat cagatgtgaa gttgagatta 4620 aagagaagaa agtgatattg aatgcaatcc ttgacacagg agcaacagtt tgtgtcgcag 4680 actcaaggat gataccagca gagatgagag agcaagcaaa gaatagaatc ataatcagag 4740 gagtaaatgg agtcacagaa gtgaatgagg tcacagctat aggaaggcta tgggtaggaa 4800 aacaatggtt taccctgcca caaacattta tcatgccaac attaggagat ggagtgcaca 4860 tgataattgg tatgaacttc atcagaacag ttgggctgag gatagaaaat ggagaagtta 4920 caatctacaa gattatgaca acagtcccag ctccaccaat tgcacacgac ctcaattaca 4980 tagaagaatt ggagttagaa ttatatgaat attatgatat ctgtgcaaca cagaatcaga 5040 ggggagaaat tgcagaagaa ttcatcgagc cagcgatgat gacaagaatg aagaagttag 5100 gctatattgg tgaagaaccc cttaagcact ggaccaaaaa tcaagtaaag tgcaggattg 5160 aagtcaagaa tccagacatg attattgaag ataagccatt gaagcatgta acgccagcaa 5220 tgaaggagac aatggcaaaa catgtcaaga agctgttgga gctcaaggtg ataagaccat 5280 cacaatcaaa acatagaaca acagcaatga ttgtggagtc aggaacagaa attgatccag 5340 ttactggaaa ggagaaaaga ggaaaagaaa gattggtatt caattataaa agattgaatg 5400 ataatacaga gaaagaccag tacagcctgc cagggatcaa cacaatcatc aagagaattg 5460 ggaatgcaaa aatatatagc aaatttgatt tgaagagcgg atttcatcaa gtcgctatgg 5520 atccggaatc aatcccatgg acagcatttt gggcaattga tgggttatat gaatggcttg 5580 tcatgccatt tggtttgaaa aatgctccag ctatattcca gagaaaaatg gacaattgtt 5640 tcagaggcac agagaagttc attgcagtat atattgatga tatattggta ttctcagaaa 5700 cagtccagca gcataaagag catttgaaga agttcatgga aatttgtgaa agaaatgggt 5760 tagttctgag cccaacaaag atgaagattg gaacaagaca agtggatttc ctaggagcaa 5820 caattggaaa ttccaagatc aagcttcagc cacatataat tcagaagata gcagaaacaa 5880 aagatgaaga actgaaagaa ttcagagggt taagaagatg gctaggaatt ctgaattatg 5940 ccagaagcta cattcctaat ctaggaaaaa tacttgggcc attatactcg aagaccaacc 6000 caaacggtga aagaaggatg aataggcaag attgggtgat tgttgataaa atcaaagatt 6060 tggtcaagaa tttgccagag ctagagctac ctccaaacaa tgccatgatg ataattgaga 6120 cagatggttg catggaaggt tggggaggag tttgtaaatg gaaggaacaa tcaggacagc 6180 caagatggtc agaaaagatt tgtgcttatg caagtggaaa gttcaatcca attaagagca 6240 caattgatgc agagattcaa gcagtcatca atagcttgga taaattcaag atatattatc 6300 ttgataagaa agaattgatc atcagaacgg acagtcaagc aatagtcagc ttctacaaga 6360 agagcagtga ccacaaaccc tcaagggtaa gatggttagc tttcactgac tatatcactg 6420 gaacaggatt ggatgtgaag tttgaacata ttgacggcaa ggataatgtg ctagcagaca 6480 ctctgtcaag gctagtaaaa atcatatgtc ataaggagaa acatccatca gagacaatat 6540 tgatcaacgt cgcagaagaa atacttcaga aaggaagtat tggagcaaag agaaaactgg 6600 gagaaatgat aagtggatat gaagcatgga tgacgaggat ccaggaacat aaaatcaaga 6660 cgctaacact tatcgaaaaa ccaattttta aatgtggttg caggaaaccg gctaggcttc 6720 acacgtctag aacatcaaga aatcctggaa gagaattcta ttcatgtgaa aacaaagcat 6780 gtttcacctg ggtatggaag gatcaaattg atgagtacgt tcaagaggtg atgacgtgga 6840 acgatcaagt gagccagttg tcagaagaac cagaaggcca caacgaagga tgcacaattg 6900 aagacgcatt cgatctgcta gacgtcagca atgacgatca atgggcaagg tcgtaagcaa 6960 tgacgtagcg gaagtgatgg accccatacc actggatggc actaaccagt gtgacaggga 7020 tatgagatgc caagtgagct ggatagcact cactttatgt aaagagtggt ctgcgtacca 7080 actccactat agtctgtctg aggtgcgatg ctgtgtcacg cacagagact ttagattcct 7140 ttgcgtgaga tgtacgcaaa gcggtaggtc cagaggtgtg ctgtgacgcg tcccttgcat 7200 tattggtggg tgcacctaac gatgcgggaa gccgaactcc ctctataaat aggacccttg 7260 tattcagttg caagcacgca aaaacaacgc gagcttactt ctgagaagaa ataagaacta 7320 tttgtgcttg aaatacacct tgtgtcaaga gtgtgagtag agtgtgagta gagcgcaaga 7380 tccgtgttgg gaattccgcc cgtcgttc 7408 //