ID HM029238; SV 1; linear; genomic RNA; STD; VRL; 6941 BP. XX AC HM029238; XX DT 06-APR-2011 (Rel. 108, Created) DT 06-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Avian nephritis virus 1 from China, complete genome. XX KW . XX OS Avian nephritis virus 1 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; OC Avastrovirus. XX RN [1] RP 1-6941 RX DOI; 10.1637/9506-081810-Reg.1. RX PUBMED; 21500638. RA Zhao W., Hua X.G., Yuan C.L., Cui L., Shan T.L., Dai X.Q., Zhu A.L., Yu Y., RA Zhu C.X., Yang Z.B.; RT "Sequence analyses of the representative Chinese-prevalent strain of avian RT nephritis virus in healthy chicken flocks"; RL Avian Dis. 55(1):65-69(2011). XX RN [2] RP 1-6941 RA Zhao W., Shan T., Dai X., Zhu A., Yu Y., Hua X.; RT ; RL Submitted (23-MAR-2010) to the INSDC. RL School of Agriculture and Biology, Shanghai Jiaotong University, 800 RL Dongchuan Road, Shanghai, Shanghai, China XX FH Key Location/Qualifiers FH FT source 1..6941 FT /organism="Avian nephritis virus 1" FT /host="chicken" FT /mol_type="genomic RNA" FT /country="China:Sichuan" FT /isolation_source="stool" FT /collection_date="2009" FT /db_xref="taxon:336960" FT CDS join(14..3048,3048..4575) FT /codon_start=1 FT /ribosomal_slippage FT /product="non-structural polyprotein" FT /note="ORF 1a and ORF 1b" FT /db_xref="GOA:F2VU08" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001850" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F2VU08" FT /protein_id="ADG45752.1" FT /translation="MASAGPTGAGACPPKAFTAQAGLAKLVNPAGLNSILLRGKDEFGA FT TQAWKELMGCDVIFARSINQWYGLKGTTYYELTVVLGQPLYKPVADPELTEEEKAVMTV FT VQSRFAQSNSSIVLARTLLNKNCELKCRVRELTDQLGNTEVQLAREKVKAAAFKLENRK FT LLVENENLKKQLEEKETKFNWKGLRSALIWLFVALLFAGYITGSDAACTLVDVPSPVKI FT GFETFKQMCLHKDSYLPEGAFDKEALALECSQHADGSDGDVYYMDCKESITNSISGKTS FT LTGMIRDVFKVDEIAATTKAVWHFAMDFSLAYPICVMFCPILTRSKKHAILAACCALVA FT KCCGLRLLPFTLVLTYAPLETAIAGCIYGLGYIDIPVVTLLHWVGLVLKAIFIPDDCFI FT GTRISHALAWSIMLPIWIITQELMAFTEFPLELQIITTVVVCTAGFGLRYLTGTVTITE FT PDGTVKKYKRISNAKSAIGTISAVLLEKAKAVRGVIPPFPSKADNIVKIEVDVDGGSMG FT VGFRLGNYLYTAGHVVGEAKIAKVTWKGLTSQAKVLGQTELPLFTDTLARLEVPKPFTQ FT LPVFRLAKSAENDYVQMVCFDHNMQSVVSFSGWANIDGEYLNAPFETYAGTSGSPIINR FT DGRILGVHFGSNAVVSQGYVISRLFASEPAVRQCKSDEDLAEEIVRKVMGGIRVSFASL FT TSELEKQREELNALKQLVNDLLDTDLLSPEKKKGKTKRTVRGQKHKTKSISKAAFMKTK FT VLTEEEYRRLEDEGFSKDEIKEIVDNLREQAWIDYQNQLDEEGDDDWYDQMMEDERINN FT QIDQEIERNLEDRGEWYGQRKITFKERAMLRFIQLGRQQQTATISFPDGHEDKAEEIFS FT KVVTTEDLPEGETSEAALSLPNKIVHQMGKRLNFKHVKIHPDKTFMKSGVTQFEETPEG FT NIILKAKTTTVAPKEELVLQQGEQQPQQVEQQQQPQQPAVEEKKRTPPPKPQRKPKTGA FT KAKCLDCGETFVERQDFHVCKSKKLKEPPSGGFTPVPDYLRWNNWQIYMEPLDLRITVP FT DNYPILGHIAIDKLVERKKKVNDPLLKMLEQPKCEGFTSTTWTRKAYTKSFEKFDYGNA FT VDFEQDYPELTAFADAAVLAEVGYMEGTHVIPIQETSKNMDSTPAFPKMLDFDSEKDYL FT AAHGMTEYVETQIGKQTGKPLWWCFLKNEILKEKKVSEDDIRIITCSDPVITRLGASFD FT TEQNERMKERTETHHAQVGWTPFFGGLDKRVRRITSCGRTQVLELDRTRFDGTIPVQLF FT QRMRTMRKFFLTRRSRKRYGKLLDWYNAQLTDRITLLPTGEVTHVKKGNPSGQFSTTVD FT NNLFNEWLTAFEFAFQHLENHGTIPTVKDYRANVDFLCYGDDRLLAYNPSFVNYDPQKT FT IDMYKNIFGMWVKPENIKLFGSPTGSSFCGFTLVKPHGRWVGVVNVNKLLQSLKTPTHR FT LPDIESLWGKLVSLKIMCYHSDPEAVSYLSNQIKRVEEYARGEGIELPEVGPDFYRKIW FT " FT CDS 4595..6637 FT /codon_start=1 FT /product="structural protein" FT /note="Orf2" FT /db_xref="InterPro:IPR004337" FT /db_xref="UniProtKB/TrEMBL:F2VU09" FT /protein_id="ADG45753.1" FT /translation="MPGPAGPGNGGTRPKTQLAKPKKAKKLPSQKKPSSQKPLKKELKK FT VEKQVKVLKKRTNGPKTDDTMKTTVTIGTISGQTTNGLSRQNRVAFNPLLLKTTSGGNT FT TPLSIRSSMCEMWRLRYVEVIATPLTGYSNIVGSVGFIALTLNGLEATADSIDTIKARR FT HYQMSLGKPARMRIPARELAGPREGWWLVDTSQSPADSYGPALDLLLAYRTENLLSTTG FT TTTSDFKGALWQVEVKVVYDFSTYNPKPGLQTLISQTLPPDQQVTITTSAQDGSLIMTT FT TSPSLIRLLTPRVGGQRSGKSETIWAIAAAAVDAAAGVLGPWGYLLKGGFWLVRKIFGP FT STLSTTTAQYQVYPCIESAMSDQPIFGGTGSEQVTLPLVHISEVMNPNSEVNNLQPSAY FT SLPPAPPQPSEDPELPLALLTGQSGVPPVYQYGGSEYTPQPKWSGSTMILTGVPHHKHS FT TGTTSPFGVRVNSMTPANVNQLDVYEFSDFAIFFGFGNYLGEGPMHTGKTMLYSLFDGS FT DVSRPWLDAAPARWQLPAWTGFAVPGAGDFYLQMQAVTDKSTRTTSTGCYFLVAYRTSR FT RLIAFHHAGASAAPAPDSLLCLYNVDAGRPPVLTNFNFQLNWDTQALGLQHSNEVELDG FT ESDDDDISLADSFINSEFGGVDQLEKEREHLLRRLRDIDAKRFTI" XX SQ Sequence 6941 BP; 1976 A; 1537 C; 1596 G; 1832 T; 0 other; ccgaatagat gggatggctt cggccggccc tactggggcg ggggcttgcc ccccaaaggc 60 tttcactgct caggccggac tggccaaatt ggtcaatccg gccggcttaa atagcatcct 120 cttaaggggg aaagacgagt ttggggcaac ccaggcttgg aaagaactca tgggatgtga 180 tgttatcttt gcaagatcca tcaatcaatg gtacgggctt aaagggacga cctactatga 240 gcttactgtt gtactcggcc aacctctgta taaaccagtt gcagatcctg aactgactga 300 agaggaaaag gctgtgatga ccgtggttca atctcggttt gcacaaagta actctagtat 360 cgttctcgcc cgcacgcttc tgaacaaaaa ttgtgaactt aaatgtagag ttcgtgaact 420 cactgatcaa ctgggaaaca cagaagttca gttagcgcgt gaaaaagtga aagcagcggc 480 ctttaagctt gagaacagga aactccttgt agaaaatgaa aatctcaaaa aacagcttga 540 agagaaggag acaaaattta attggaaggg actaagatct gccctcatct ggctttttgt 600 tgctttactg tttgccggct acattactgg ttcagatgca gcatgtacac ttgttgacgt 660 tccgtcccct gttaaaattg ggtttgaaac tttcaagcag atgtgtctcc ataaggattc 720 ctatctccct gaaggtgcct ttgataagga agctctggca cttgaatgct ctcagcatgc 780 agatgggagt gacggagatg tctattatat ggattgtaaa gaaagtataa ctaattcaat 840 ctcagggaaa acctccctta ctgggatgat tcgtgacgtc ttcaaagttg acgaaattgc 900 tgctacaaca aaggctgttt ggcactttgc tatggacttt agtcttgcct atccaatctg 960 tgttatgttt tgtcctattt taacaaggag caaaaaacac gcaatactag cagcgtgttg 1020 cgctcttgta gcaaagtgtt gtggattgag acttttgccc ttcacattag tactcacata 1080 tgcacctctt gagacagcca tagcaggttg catttatggg cttggctaca ttgacattcc 1140 agtggtgact ttacttcatt gggttggact tgttcttaaa gccattttta ttcctgatga 1200 ttgctttatc ggaactagga tttcacatgc cctagcctgg tccataatgt tgccaatctg 1260 gattataaca caagagctta tggcatttac agaattccct cttgaacttc agataattac 1320 aacagtcgtg gtttgtactg caggctttgg ccttcggtac ttgactggaa ctgttacaat 1380 aactgaacct gatggaactg ttaaaaagta taagaggatt tccaatgcca aaagtgcaat 1440 tggtactatt tcagctgtac ttttagagaa agcaaaagct gttagaggtg tgataccacc 1500 ttttccgagt aaggctgata acattgttaa aattgaggtt gatgttgatg gtggttcgat 1560 gggcgttggc ttccgacttg gcaactacct atatacagcg ggtcatgttg ttggggaagc 1620 aaaaatagcc aaggtaactt ggaaaggctt aacatctcaa gccaaagtcc ttggacaaac 1680 tgagctacca ctcttcacag atacgcttgc ccgccttgaa gtaccaaaac ccttcacaca 1740 acttccagtt tttaggttag caaagtctgc tgaaaatgac tatgtgcaga tggtttgttt 1800 tgaccacaat atgcagagtg tagtttcatt ctctggctgg gctaatatcg acggtgaata 1860 ccttaatgct ccttttgaaa cctatgcagg gacatcgggt tcacctatta ttaataggga 1920 tgggagaata cttggtgttc attttggtag taatgccgtc gtttcacagg gttatgttat 1980 ttctaggctc ttcgcttctg aaccagctgt taggcagtgc aaatctgatg aggatcttgc 2040 tgaagagatt gttcgcaagg ttatgggcgg tataagggtc tcctttgctt cacttacatc 2100 tgaactcgag aaacagcgtg aagaacttaa cgctcttaaa cagttggtca atgatctttt 2160 agacaccgac ctcctgtctc ctgagaagaa gaaaggtaag actaagagga ccgtccgtgg 2220 tcaaaaacat aaaactaaat ccatctctaa ggcagccttc atgaaaacta aagtccttac 2280 cgaggaagaa tatcgccggt tagaggacga aggcttttcg aaagatgaga taaaagagat 2340 tgtggacaat ctccgtgaac aagcttggat tgactaccag aatcaacttg atgaagaagg 2400 tgatgatgac tggtatgatc aaatgatgga ggatgaaaga ataaacaatc aaattgacca 2460 ggaaattgag aggaatctcg aagatagagg cgagtggtat ggtcaaagaa aaataacctt 2520 caaggaaaga gcaatgcttc ggtttataca acttggtcga caacagcaaa cggccactat 2580 ttcattccct gatggtcatg aagataaagc tgaagaaatt ttcagtaagg tcgttaccac 2640 tgaggacctt ccagaaggag aaacttcaga agcagcgctc agcctcccca ataaaattgt 2700 acatcagatg gggaagaggt taaacttcaa gcatgtgaaa atacacccag ataaaacttt 2760 tatgaagtct ggggtaacgc agtttgaaga aacgcctgaa ggtaacatca tcctcaaggc 2820 caaaactaca actgtggctc ctaaggaaga actagtcttg caacaaggtg aacaacaacc 2880 acagcaggtt gaacaacagc aacaacctca acaaccggct gtagaagaga agaaaagaac 2940 accaccacca aaaccgcaga gaaaaccaaa gacaggtgca aaagcaaagt gtctcgactg 3000 tggcgagact tttgttgaaa gacaggattt tcatgtttgt aaatcaaaaa actaaaagag 3060 cccccttcgg ggggctttac acctgtccct gattacctta ggtggaacaa ctggcaaatc 3120 tatatggaac ctcttgacct gagaataaca gtacctgaca attatcctat tttgggtcac 3180 attgccatag ataagctggt tgagcgtaaa aagaaggtca atgaccctct gctcaaaatg 3240 cttgaacaac ctaagtgtga aggctttact tcgacaactt ggactcgtaa ggcctacact 3300 aagtcatttg aaaaatttga ttacggcaat gctgttgact ttgagcaaga ttacccagaa 3360 ctcactgcct tcgcagatgc tgcagtgctt gctgaagttg ggtatatgga gggaacacat 3420 gtaatcccca ttcaagagac cagtaaaaac atggactcta ctcctgcttt ccctaagatg 3480 cttgattttg atagtgaaaa ggactatctt gcagcacatg gaatgacgga gtatgtggaa 3540 acccaaatag gcaaacaaac tggtaagcca ctttggtggt gcttccttaa aaatgagatc 3600 cttaaggaaa agaaggttag tgaggatgac atcaggatta ttacttgctc tgacccagtg 3660 ataactagac tgggcgcctc ttttgacaca gaacagaatg agcgcatgaa ggaaagaact 3720 gaaacacatc acgctcaggt gggctggacc cccttctttg gtggactgga taagcgtgtt 3780 aggagaatca cgtcctgtgg caggacccaa gtcttagaac ttgatcggac gcggttcgat 3840 ggcaccattc cagttcagct cttccaaaga atgcgtacca tgcgtaaatt cttccttact 3900 aggcgttcac gaaagaggta tggaaaatta cttgactggt acaatgccca gttaactgat 3960 aggattactc tcttaccaac gggagaggtt actcatgtca agaagggcaa tccatctgga 4020 cagttttcaa caactgttga taataatctt ttcaatgagt ggttgactgc ctttgagttt 4080 gcttttcaac atctggaaaa ccatggcaca atcccaacag tcaaagacta cagggcaaat 4140 gttgactttc tctgctatgg agatgatagg ctcttagcct acaatccatc ctttgtcaac 4200 tatgatcctc agaaaaccat tgatatgtat aagaatatct ttgggatgtg ggtcaaacct 4260 gaaaacatca agctctttgg ctcgccaaca ggttcttcct tttgtggctt taccttggtt 4320 aagccacatg ggcggtgggt gggagttgtc aatgttaaca aactccttca gagtctcaaa 4380 acacccacgc acaggctgcc agacattgaa tccctgtggg gcaagctcgt gtcgctgaaa 4440 attatgtgct accacagtga ccctgaagct gtgtcctacc tttctaacca gataaagcgt 4500 gttgaagaat acgctcgtgg tgaagggatt gaacttcctg aagtcgggcc cgacttctac 4560 agaaaaatct ggtgagcgga ggaccaaaat aagaatgcct ggccctgccg gccctggcaa 4620 tgggggcacc cgccctaaaa ctcaactagc gaaacccaag aaggcaaaaa aactcccatc 4680 tcagaagaag ccttcttcgc agaaacctct caagaaagaa cttaagaagg ttgagaaaca 4740 agtgaaggtg cttaaaaaac gcaccaatgg gcccaaaact gatgatacca tgaaaacaac 4800 agttactatt ggtactattt caggacagac tacgaatggg ctctctaggc agaatagggt 4860 ggcttttaat ccattgctac tgaaaacaac tagtggaggc aatacaacac cgctctcaat 4920 caggtcctca atgtgtgaga tgtggagact tcgctatgtg gaagtcattg caacacctct 4980 aactggctat tccaatattg tgggctcagt tggctttata gcgctcactc ttaatggcct 5040 tgaagctact gctgattcta ttgataccat caaggcgcga agacattatc aaatgtcgct 5100 tggtaagcct gcccgcatgc gtataccagc cagggaactt gccggcccta gggagggttg 5160 gtggctcgtt gatacttcac agtcgccagc agattcgtat ggtccagcac tagatttgct 5220 tctagcatac cgtactgaaa atctccttag tacaactggc actactactt ctgattttaa 5280 gggtgctctc tggcaagttg aggttaaggt tgtttatgac ttttccactt ataacccgaa 5340 accagggctg cagacattaa tttcacagac tcttccccct gatcaacagg taacaataac 5400 aacttctgca caagatgggt cactgattat gactactact agcccctctc tcattcggct 5460 actcacgcct agggttggtg ggcaacgtag tgggaaatcg gagaccatct gggcaattgc 5520 tgctgctgct gttgatgctg cagctggtgt tcttggtccc tggggctatc ttcttaaggg 5580 tggtttctgg ctagttcgca agatttttgg accatcaaca ctctctacaa caacagcaca 5640 gtaccaggtc tatccatgca ttgagtctgc aatgtccgat cagcccatct ttggtggtac 5700 tggttcagag caggttactt taccattagt acatatctca gaagttatga atcccaattc 5760 tgaggtcaat aacctgcaac catctgcata ctccctacca cctgccccac cacaaccttc 5820 agaggatcct gagctaccac tagcactctt aactgggcaa tcaggtgttc cacctgtcta 5880 ccagtatggt ggtagtgaat atacaccaca gcccaaatgg agtggctcca ctatgattct 5940 cactggagtg ccccaccaca aacactcaac aggcacaact tctccttttg gtgttcgggt 6000 caattcaatg acgcctgcta acgtgaacca gttggacgtc tatgaattct cagactttgc 6060 aatcttcttt gggtttggta actaccttgg tgaggggcca atgcacactg gaaagactat 6120 gctctactct ctctttgatg gtagcgatgt ctctagacct tggcttgacg ccgcacctgc 6180 gcgatggcaa ctacctgcgt ggaccggctt tgcagtacca ggtgccgggg acttttatct 6240 tcaaatgcag gcagtaaccg acaaatcaac cagaactaca tctactggtt gttacttttt 6300 ggtcgcctat cgcacctcgc gtagacttat tgctttccac catgcgggag ctagtgccgc 6360 acctgcgcct gactcactgc tgtgcctgta taatgttgat gccggtcgac cacccgttct 6420 tactaatttt aacttccaac taaattggga tacacaggca cttgggctgc aacactctaa 6480 tgaagttgaa ttggatggag aatctgatga tgatgatatc tctctagcgg attccttcat 6540 caacagcgag tttggtggtg tggaccaact cgaaaaagaa agggaacatc tactgcgtcg 6600 cctgagggat atcgacgcaa agcgcttcac tatctaagcg caccacactg gctaactgac 6660 tacagttgag aaggggtgga ccgtaaacca ctggttggct gactacagca actgactttc 6720 ccgaggccac ggcgaatagc atcgagggta caggaaagct ggggccattg catagtcaac 6780 taatttgact atgctagggg aatcaatggg gtggtgggtt aatcaaaccg ccactcacgc 6840 aacttggagc ctgctaaaac ctacgctcct gtgcgctaaa gttggttctc ccgaaagtgg 6900 gcttttcatt atttgaatta attttgaatt ggctaacttt t 6941 //