ID GU979420; SV 1; linear; genomic RNA; STD; VRL; 8086 BP. XX AC GU979420; XX DT 19-JUL-2010 (Rel. 105, Created) DT 19-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Circulifer tenellus virus 1, complete genome. XX KW . XX OS Circulifer tenellus virus 1 OC Viruses; dsRNA viruses. XX RN [1] RP 1-8086 RX DOI; 10.1016/j.virol.2010.05.015. RX PUBMED; 20541786. RA Spear A., Sisterson M.S., Yokomi R., Stenger D.C.; RT "Plant-feeding insects harbor double-stranded RNA viruses encoding a novel RT proline-alanine rich protein and a polymerase distantly related to that of RT fungal viruses"; RL Virology 404(2):304-311(2010). XX RN [2] RP 1-8086 RA Spear A., Stenger D.C.; RT ; RL Submitted (05-MAR-2010) to the INSDC. RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA XX FH Key Location/Qualifiers FH FT source 1..8086 FT /organism="Circulifer tenellus virus 1" FT /host="Circulifer tenellus" FT /mol_type="genomic RNA" FT /country="USA:Parlier, CA" FT /collection_date="2009" FT /db_xref="taxon:862944" FT gene 643..4044 FT /gene="PArp" FT CDS 643..4044 FT /codon_start=1 FT /gene="PArp" FT /product="proline-alanine-rich protein" FT /db_xref="UniProtKB/TrEMBL:D9D9L9" FT /protein_id="ADK12923.1" FT /translation="MTPPPSVPQPPAHSRPEEGAKAPQTAPLGATPPLQPQGPLAGGAP FT SPLMGEHEPGTPSIEPNPTSRGLQLGALDDAPVPNLLEHNDLDQPTQSGESAEPPHQGA FT LGVEPPLQAPPPQEEGEVRVVRHPSPSRSQSPDQPPPQPLPPLTQSDPITPPQSQPPSS FT PQPSRPPTPPPPSQPTQQELPHPPLPQQPHPLASRSAPHEKLLFRLIPTGSENWIHAVA FT GVAEKVAPALVAIGIGYAAPELLPFLPALSSEAEAAVLESAEAASAWAALRPSLIEQVN FT AQPPQTLGEALRQFQDQVGRPNLVRAPDQPLRLPTQAAEMRRKDVLASAPKYIQLMRQR FT HPYLFSNQVRHNNLHSAGADHHLRRREMPGARRVKPTHASPHRSLWAGEAQIGDHSIHG FT AGVSEELLVDMVFEGSATPNFFSRFGTTLRNQDGNFQNIAAAAGVANSGFQIGSGISLA FT ANGGGLEPAHNIWGTVFPSHFGPRAAGAAPQGRHDIVVHAGGPREIGRFTASAISSFIQ FT GGVPSERAVMSALSPYLRIPAANVNVARALVPLILSGWEYYDNSYLYAKLWFYVFLRDV FT YVAVGGNPPAVVPFPPNVHAPAWINLNGVNNVHTIPNAIDGKSICLVNDKDVFTGNPTD FT LQIIYWLTAAGSRLDGNAGQPTPDATYIQWEAINVTILAHADEAGAPQAALVSQSSIID FT FIHRLATNRAEWSSALKGMYLALDILGIRYSDHDNEQWAVRSNLSPHNPWVPGPADYNF FT LLRWLLIFPDDPAESRYECNVAAQMAPQTRARVAALYNAAVSTFTTTLLFDLNLTKQHL FT LQWTTGDAELPPMAQTLFMEALNQYDQSTSPVEAFAMRQVHNAMGTFLGVHACSNLYPE FT DTWLGNFGQNPGAAVIYQDYGAQTVTLALLNPLVLTEWLTMFPFEWGVIGTQPTLNLAA FT DVKNIGPPALQGWYAYRGSKFYNERVVGDFPVKIVVYGAQVINIISQHNRFGAAAVPAV FT QRQAADYYGQDASGTTPSWGPAQAIPDLAGFYDANIHIFRPCTVMSYDYVNGQVWSPAL FT LNDNIGPGEAARLKYWTGQRVDNGGIFLPKVGGETAPVRLPAQLNLMRIGGMKSRKANE FT DAKATPNQDKAGEKPAAEASGAAVNP" FT CDS <4038..8018 FT /codon_start=1 FT /product="RNA-directed RNA polymerase" FT /note="RdRp domain of PArp-RdRp fusion protein generated by FT -1 translational frameshift" FT /db_xref="GOA:D9D9M0" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:D9D9M0" FT /protein_id="ADK12924.1" FT /translation="PLIDAYCLSRPVALPLPRRAAILSGRHTPQYAGCIYHGAVERYTI FT HIEDGFTKPLPRWALPGGGSIKIEWCTRKAATQLHQLWLDLVAIESDHLLPHGLHFGYI FT QAIAVCGCDGRLTSQDGSSLAHPDAAVVSDVPICSNAPKGGLISTIRVGGCSNIRASDP FT KVAGGLLRAIECVRLALVRHKCASRALADQLLAEYTPEYVSNTDPHLAYTMRQEVIRSA FT GPVQPRAAGWPRGGLACHALAYTLQSGHGHKNLASLIDIASTNLAQMVSTALDMMAIAA FT LALPALNHDGENASTGEVSSLRHSVANWLDACVGSLIHAPTVPSACDMPKPDPSCAAWL FT TRRFTAWVTEDGLFDWRRVCYHEDHFQKFTSRLFPGNVIKTRGHNGSGYRGQTVFLRSS FT KTRKHLKCLNLLFPSPSSTDSRHQTLHISDYIWSLIRSRIHGWTPSSILRKVNAVLRHI FT PVGTFQTTAMAMVMASLGSKSGDLISKCYLSSGLLWRPMAFQRAALKAYSNLARRCATT FT LAGESLTDAEVAQLAYYDLSFGRSLNTTNWDEEYRNRCIGTLHIQAPSLSIVFSPLGDN FT RVMLEWKSDLDNTSYDRLKRSSRFYTMLRRELREMCDVLVTKRNTSEPLDKFFKRRHEW FT MASGSSAGFTMPVSLKRGSKAKGEQWHGDVKVSKRAWAETIDTKDVLHELYLGDPQEVA FT TASEKYENGKARAIYGVAPMHYVLNTYATKGFEERFHLVEGLEKGASGAHAVTLEQARA FT NITADPDIECSMFDYADFNRHHTPEAQAIVFDVFAELGQAKGANPDWVRANQWVAQAKR FT SMYTQLPDREGRHRVYQGMFSGTRSTDLLNTLLNLAYFRVARRYVDEQLGVHAIDMYHV FT HQGDDVWVSNRNPTWARALFYVLNNMGFIFQKSKQMFGVGRGEYLRVLYSSGHGYGYLG FT RAIANYILRPIQNANPISPISWATSINDSMALLVRRGLSIAMADVLYDNNVSFWVRARA FT HAKDRAPVSLPREYVRLPRILGGLGAMPPSQILPTPNPDSPVLPPLPTMSTTFKSQALN FT VPTKMTDDWLRYISSRRQGLGGVLDDPTIIRTDLLRQEMIQSNFSGDLANVLPERGWAK FT YKRDIAKLSASVPKWASELLARSRPLPPDPDALVDTVINDIYPTPYPLRSSVPQYPVLQ FT QHCSYLQGGKVFKMERVGGLSDTLQAIITRSTFKSEKTMAKALGITRVEAIAQILVESN FT DLGADGADVAALLYPVLNAGNEQLLELLLGQGGELIPHLSLYASPTYWQHMQRVWLDIL FT CNAIRHGPTLNATNVVYGDARGWAVWSQSLRGDHNLLTSVVY" XX SQ Sequence 8086 BP; 1792 A; 2451 C; 2176 G; 1667 T; 0 other; gtcatccacc gaccggtggg tgtttggctt gcggggaaac tcactgctat gcaggaatgg 60 accaaccaaa cacacaagac aaacacccac tggcaccccg ttggtgctca gtcggtgtat 120 ggccatcccc caactccatg caaaattaag ggcttggggg atgctaatta gtatagcaca 180 caacgcaaga tgtcttgcca catgcgtccc acccggggga ggagttccac tgcctacccc 240 tcagggttta tgaggacgtg cccaaaattc ggatgcttgg tacatcagcc agatgtattg 300 ggcatgccgg tgctaagtcc aagccacggg cgaatgcgac ctggaagctt ggtaaatgcc 360 gagagactgc aacgggctag ggggtgccat ttggcactgc gttgagcaac ctgaatgtgg 420 tgaggtacag tccaacagct aagcgagctg agatgatcac atctattgcg tttgcttcta 480 ggtgtgctcc tgcgttttca tccctattaa gggctgtgtt ctcctccgtc ttcaaactgt 540 tccgcattca cttgattcag attttagtga tagcgcttta tttgactcat ttgtgtgcgt 600 ttcaatctgt tttcaagacg gaccgatcgc gtgaatctgg gcatgactcc cccacccagt 660 gtcccgcaac ctccggccca ctccaggccg gaggaggggg cgaaagcccc ccaaacggcc 720 cctctcgggg ccactccccc cctccaaccc caggggcccc tagccggggg ggccccctcc 780 cccttgatgg gggagcacga acccggcact cccagcatag agcccaaccc caccagtcgg 840 ggcctacaac tcggagcgct agacgacgcg cccgtgccca acttgttgga gcacaacgac 900 ttggatcagc cgacccagtc gggcgagtca gccgagcctc ctcaccaggg ggctctgggg 960 gtagagccgc ctctacaggc ccctcctcct caggaagagg gcgaggtaag ggtggtaagg 1020 catccaagcc caagccggtc tcagtcgcca gaccaaccac ccccacaacc cctccccccc 1080 ctcacccaat cggaccccat cactccgcct caatcacaac caccctcctc cccacagccc 1140 agccgacccc ctacaccgcc cccacccagc caaccaactc aacaggaact gccccaccca 1200 ccactcccgc agcagccaca tccactagcc agccgatcag caccacacga aaagctgctg 1260 ttccgactta tacctactgg ctcagagaat tggatccacg cggtggcggg ggtagccgaa 1320 aaggtagcac ccgctttggt cgccattggc attgggtatg ccgcaccgga gctgctcccc 1380 ttcctgccgg cgctatcatc cgaagcggag gcggctgtcc tggagtcagc ggaagcagcg 1440 tccgcatggg cagctctacg gcccagcctg atagagcagg tgaacgccca acccccgcaa 1500 accttgggcg aagcactacg ccagttccag gaccaagtgg gacgccccaa cctagtgcgc 1560 gccccagacc agccactccg gttacccacc caggcagcgg agatgcggcg caaggatgtg 1620 ttggcgagcg cccccaaata cattcagttg atgcgccaac gacacccgta cctgttcagc 1680 aaccaggtac gccacaacaa cctgcacagc gccggcgcag atcaccacct acgtcgccgg 1740 gaaatgccgg gggctaggcg tgtcaagccc acacacgcca gccctcaccg gagtctgtgg 1800 gctggtgagg cgcaaattgg agatcactcc atccatgggg ctggtgtgtc tgaagagcta 1860 ctcgtggaca tggtctttga gggctctgcc acccccaatt tctttagccg gtttggcacg 1920 acactgcgta accaagacgg caatttccaa aacatcgcgg ccgccgccgg ggttgcaaac 1980 tccggcttcc aaattggcag tggcatatcg ctcgccgcca acggaggggg tttggagcct 2040 gctcacaaca tttggggcac tgtattcccc tcccacttcg ggccgcgcgc tgccggtgca 2100 gcgccccaag gccgccacga cattgtcgta cacgctggcg ggccgcgtga gatcggtcgt 2160 ttcacggcta gtgcgatcag ctccttcata caaggggggg tccctagtga gcgcgccgtt 2220 atgtccgccc tatcaccgta cctgcgcatt ccagctgcga acgtcaacgt cgcacgtgct 2280 ctcgtccccc tcatcctctc gggatgggaa tattatgaca acagctacct gtatgcgaag 2340 ctttggttct acgtgttcct acgcgacgtg tacgtggcag ttggtggcaa ccctcccgct 2400 gtggtgccct tcccccccaa tgtccacgcc cctgcgtgga tcaacctcaa tggggttaac 2460 aatgtgcaca ctatccccaa cgccattgat ggtaaaagca tttgcctcgt taacgacaaa 2520 gatgtcttca ccggtaaccc cacagatctc cagatcatat actggctcac tgcagccggg 2580 tctagactgg acggcaacgc cgggcaaccg acacctgatg ccacctacat ccagtgggag 2640 gcaataaacg tcactatcct agcccacgcc gatgaggctg gggcaccaca agctgctttg 2700 gtgtctcaat cttctatcat tgactttatc cataggctag ccaccaaccg agcagagtgg 2760 tcctcggccc tcaagggcat gtacctggct ctagatatac taggcatcag gtactcggac 2820 catgacaacg agcagtgggc cgttaggtcc aacctgtccc cccacaaccc ctgggtgcct 2880 gggcctgccg actacaactt cctgttaagg tggttgctca tattccctga tgacccagct 2940 gagtccaggt atgagtgcaa tgtcgcagct cagatggcac cccagactcg tgcccgagtg 3000 gcggcattgt acaatgccgc cgttagcacc ttcacgacca cgctgctatt cgatctgaac 3060 ctcaccaagc agcacctact ccagtggact actggtgatg cagagttgcc ccccatggcg 3120 cagacacttt ttatggaggc cttaaatcag tatgaccaga gtacctctcc ggttgaggcc 3180 ttcgccatga ggcaggtgca caatgcgatg ggcacattcc ttggggtgca tgcgtgctcc 3240 aacttatacc ctgaggacac ttggctaggt aacttcggcc agaacccagg cgccgccgtc 3300 atataccagg actatggcgc ccaaactgtg acactcgctc tgctcaaccc cctagtcctc 3360 actgagtggt tgactatgtt cccattcgag tggggtgtca tcggcacaca gccgacacta 3420 aacttagcgg ctgacgtcaa gaacataggc cccccagctc ttcaaggctg gtatgcgtac 3480 agaggcagca agttttataa tgagcgtgta gtgggcgatt tccctgttaa gattgtggtg 3540 tatggcgcgc aagtcataaa cataatcagc caacacaaca ggttcggggc tgctgctgtg 3600 cccgcagtcc agcggcaggc cgctgactac tacggtcagg acgcttcggg caccacaccc 3660 agctggggcc ctgcccaagc catacccgac ctggccggct tttacgacgc caacatccac 3720 atcttccggc catgcacagt catgtcatat gactatgtga acggccaggt gtggtccccc 3780 gctctgctaa acgacaacat agggcctggc gaggcggccc gcttaaagta ttggacgggc 3840 cagcgagtgg acaatggtgg gatattccta cccaaggtcg gtggcgagac agccccagtg 3900 cggctgcctg cccagctcaa cctcatgcgc attgggggca tgaagtctag gaaggccaat 3960 gaggacgcca aggccactcc caaccaagat aaagctggag agaaacctgc tgctgaggcc 4020 tccggggcgg cggtaaaccc ttaatagatg cctactgcct aagccggccg gtcgcattgc 4080 ccctgcctcg gagggcagcg atattatccg gccgccacac cccccaatat gcagggtgca 4140 tttaccacgg cgccgtggag cggtacacca tccatattga ggacgggttt accaagcctc 4200 tgcctcgctg ggctctacct gggggaggga gcatcaagat tgagtggtgc acccggaagg 4260 cggccacgca attgcatcaa ctgtggctgg acttagtcgc cattgagagt gatcacctac 4320 tgccgcatgg attgcatttt ggctacattc aagccatagc ggtctgtggt tgtgatggtc 4380 gccttacctc ccaggatggt tcaagtctag cccatcccga cgccgctgtg gtatcagacg 4440 tacccatatg ttcgaacgcc ccaaagggtg ggctaattag cacaataagg gtgggggggt 4500 gttcgaacat tagggcgtct gatcccaaag tggcaggcgg tcttctacgt gctatagagt 4560 gcgtgcgctt agcgctcgtc agacataaat gtgcgtcgcg tgcactcgct gatcaactgc 4620 tcgctgagta cacccctgaa tatgtgtcta ataccgaccc acacctcgcc tacactatgc 4680 ggcaagaggt aatccgctcc gcgggcccgg tgcagcccag ggcagctggg tggccccggg 4740 gcggtctggc atgccacgca cttgcttaca cccttcagag tggccacggc cacaagaact 4800 tggcgtctct aatcgacata gcatccacta acctggctca gatggtgagc acggcattag 4860 acatgatggc tatagcagcc ttggcgctcc ctgctcttaa ccatgatggg gagaacgcct 4920 ctacggggga ggtaagttca ttgcgccatt ccgttgccaa ttggttggat gcgtgtgtgg 4980 gcagccttat tcacgcaccg accgtgccat cggcttgcga catgcccaaa ccagacccaa 5040 gctgcgccgc ctggttgacc aggcgtttta ctgcctgggt gaccgaggat ggactattcg 5100 actggcgccg agtttgctat catgaggatc acttccaaaa attcacctct cggctattcc 5160 ctggcaatgt gatcaagacc cgggggcaca acggtagtgg gtataggggg cagacagtgt 5220 tcttaaggtc gtcaaagacc cgcaagcacc tcaagtgcct taacctcttg ttcccgtcac 5280 cctctagtac ggatagcagg catcagacgt tgcacatatc tgactacata tggtctctga 5340 ttcgcagccg tatccatggc tggacaccct cgtccatcct gaggaaggta aacgccgtcc 5400 tcagacacat ccccgttggc acatttcaaa ccacagccat ggccatggtt atggctagtc 5460 tggggtctaa gagtggtgac cttatatcta agtgctatct gtcttccgga ctattgtggc 5520 gtccgatggc cttccagcgc gcggccctga aggcatacag caatctagcc cgtaggtgtg 5580 ctaccacatt agccggcgaa tcgctcaccg acgccgaggt agcccagttg gcctactatg 5640 acctgtcgtt cggtaggtcc ctaaacacca cgaattggga tgaggagtac aggaacaggt 5700 gcataggaac gctccacatc caggcacctt ccctaagtat cgtgttcagc cccctaggtg 5760 acaacagggt tatgctcgag tggaagtcgg acttggacaa cacgtcgtac gatagattga 5820 agcgcagctc gcgcttctat actatgttgc ggcgagaact ccgagagatg tgcgatgtgc 5880 tagtaactaa gcgcaataca tctgagccgc tagataagtt cttcaagcgg cgtcatgagt 5940 ggatggcatc aggcagctca gccgggttca ccatgccagt atcactgaag cgcggctcca 6000 aggcgaaggg tgagcagtgg catggggatg tcaaagtatc caaacgagca tgggctgaga 6060 cgattgacac gaaggatgtg ttacacgagc tgtacctggg cgatccccag gaagtggcca 6120 cagccagtga gaaatacgaa aacggcaagg ctagggcaat ttacggtgtg gcccccatgc 6180 actacgtgct taacacctac gccaccaagg gctttgagga gcgctttcac ttggtagaag 6240 ggctagagaa gggggcatcc ggcgcgcatg ctgtaacgtt ggagcaggct cgcgccaata 6300 taacagctga ccctgacatc gagtgctcca tgtttgacta cgctgatttt aacaggcacc 6360 acacccctga agcacaagcc attgtgttcg acgtgtttgc cgagcttggt caggcgaagg 6420 gtgctaatcc agattgggtg cgggctaatc aatgggtggc ccaggcgaag cgtagcatgt 6480 acacccaact acccgaccgt gaggggcgcc accgcgtgta ccagggcatg ttctctggta 6540 cccgatcgac cgacctgctc aacaccctcc tgaacctggc gtacttcagg gtggccagga 6600 ggtacgtcga tgaacagtta ggggtgcatg cgatagatat gtatcatgtg caccaaggtg 6660 atgatgtgtg ggtgtctaac cgcaacccta cttgggccag ggcacttttc tacgttctga 6720 acaacatggg gttcatcttc cagaagtcca aacagatgtt tggagtgggc agaggcgaat 6780 acctgagggt gctatattcg tcaggccacg gatatggata cctaggccgc gctattgcga 6840 attacattct gcggcctatt cagaatgcca accccatatc gccaatcagc tgggccactt 6900 caatcaatga cagcatggcc ctcctcgtta ggcgaggtct atccatcgcc atggcagacg 6960 tgctgtacga caacaacgtt tctttctggg tacgtgccag ggcgcatgcg aaggaccggg 7020 ctcctgtcag cctacctcgt gaatatgtgc gcctcccgcg tatactgggt gggttaggtg 7080 ccatgccacc cagccagata ctacccacac ccaacccgga cagtcccgtc ctccccccac 7140 tgccgaccat gagcaccacc ttcaagagtc aggccctaaa tgtgcctacc aagatgacgg 7200 atgattggtt gcggtacatc agcagtagga ggcagggctt aggtggtgtg ttggacgacc 7260 ccaccataat ccgcactgac ctattgcgtc aagagatgat ccaaagtaac ttctcaggag 7320 atctagctaa tgtgctacct gagcgagggt gggccaaata caagcgcgac atcgccaaat 7380 tatccgcttc tgtccccaag tgggctagcg aactcctggc gcgttcacga cctttgcccc 7440 ctgatccaga cgctctggtg gacacagtaa tcaatgatat ataccccacg ccctacccgc 7500 tacgctcgtc agtcccccaa taccccgtct tacagcagca ttgcagctac ttacagggag 7560 gtaaagtgtt taagatggaa cgtgttggtg gattgagcga cacacttcaa gccataataa 7620 ctcgctctac cttcaagagt gagaagacta tggccaaagc acttggtatt acccgcgttg 7680 aagccatcgc ccagatcctt gtggaatcta acgatctagg ggccgatggc gccgatgtgg 7740 cggcccttct atatccagtg ctcaatgccg gcaatgagca actgcttgaa ctgttgctcg 7800 gccagggagg tgagcttatt cctcacctgt ctctatatgc cagccccacg tactggcaac 7860 acatgcaacg cgtgtggctt gacatcctct gcaatgccat acgtcacggc cccaccttga 7920 acgccaccaa cgtggtgtac ggtgatgcgc gtggctgggc ggtgtggagc cagtcactac 7980 gtggtgacca caacttacta acaagtgtgg tctattaatt cattcctgcg tgccgcttcg 8040 gcacagaact atgcagggag ctataacgct cccctaccca tagagc 8086 //