ID GU345044; SV 1; linear; genomic DNA; STD; VRL; 5421 BP. XX AC GU345044; XX DT 13-SEP-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Canary polyomavirus isolate CaPyV-Ha09, complete genome. XX KW . XX OS Canary polyomavirus OC Viruses; dsDNA viruses, no RNA stage; Polyomaviridae; Polyomavirus; OC unclassified Polyomavirus. XX RN [1] RP 1-5421 RX DOI; 10.1099/vir.0.023549-0. RX PUBMED; 20797969. RA Halami M.Y., Dorrestein G.M., Couteel P., Heckel G., Muller H., Johne R.; RT "Whole-genome characterization of a novel polyomavirus detected in fatally RT diseased canary birds"; RL J. Gen. Virol. 91(Pt 12):3016-3022(2010). XX RN [2] RP 1-5421 RA Halami M.Y., Dorrestein G.M., Couteel P., Mueller H., Johne R.; RT ; RL Submitted (18-DEC-2009) to the INSDC. RL Food Hygiene and safety concepts, Federal Institute for Risk Assessment, RL Diedersdorfer Weg 1, Berlin 12277, Germany XX FH Key Location/Qualifiers FH FT source 1..5421 FT /organism="Canary polyomavirus" FT /host="Serinus canaria" FT /isolate="CaPyV-Ha09" FT /mol_type="genomic DNA" FT /country="Netherlands" FT /isolation_source="liver" FT /collection_date="2007" FT /db_xref="taxon:881945" FT CDS 1082..2191 FT /codon_start=1 FT /product="virus protein 2" FT /db_xref="GOA:E0XL31" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/TrEMBL:E0XL31" FT /protein_id="ADM88648.1" FT /translation="MGAIVSIFVAIGEAVAATGLAAETIISGEAAAILGAQISSLAAEG FT FTTAEALSTLGLTPELFAFTTSLASAAESGGALWTGIASGLYSLGGAGVSGIAGGLQGG FT IATAAAGLVRFPNISKQRHEMALQIWQPLDWLYPEAEWLYNAYHYFDPYSWLPSLIDQL FT GYYFWEYVERTGQRQLASQATAVAVRATNRAWYTLTEQISNAGWFIRNGYYALEHYYRV FT LPPRFGPPRLRSYLEANRENVFIDPPDMGSETSDNRFEGDFLKRLKKIFSREQESGERV FT YKSRPPGGAEQMVTPDWLLPLILGLLGDLTPTFAADIRRYGSENRKRKATSTSTPPVNK FT RRNRGTRPKDRRRLNNNSRGLSKSQNGNR" FT CDS 1454..2191 FT /codon_start=1 FT /product="virus protein 3" FT /db_xref="GOA:E0XL32" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/TrEMBL:E0XL32" FT /protein_id="ADM88649.1" FT /translation="MALQIWQPLDWLYPEAEWLYNAYHYFDPYSWLPSLIDQLGYYFWE FT YVERTGQRQLASQATAVAVRATNRAWYTLTEQISNAGWFIRNGYYALEHYYRVLPPRFG FT PPRLRSYLEANRENVFIDPPDMGSETSDNRFEGDFLKRLKKIFSREQESGERVYKSRPP FT GGAEQMVTPDWLLPLILGLLGDLTPTFAADIRRYGSENRKRKATSTSTPPVNKRRNRGT FT RPKDRRRLNNNSRGLSKSQNGNR" FT CDS 2043..3113 FT /codon_start=1 FT /product="virus protein 1" FT /db_xref="GOA:E0XL33" FT /db_xref="InterPro:IPR000662" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:E0XL33" FT /protein_id="ADM88650.1" FT /translation="MAPRTGKGRLPAPVPRLLIKGGIEVLGLKTGEDSITTVEAYLNPR FT MGTGNGAYSAALTVGSATSDKPKKSELPCYSCAKITLPTLNDDLTGSTMLMWEAVSVKT FT EVVGVSSLTNVHSGGLNNRQVGGYGAGLPVSGLNFHFFAVGGEPLDMQGYVQSVNTEYP FT AGTTGPKEGHTSNADSDVLNPIYKAKLTADGVFPVESWCPDPSRNENTRYFGHLTGGVG FT APPVIQFTNTVTTILLDENGVGPLCKGDGLYLTSADICGLLTDQDSKQYFRGLARYFNV FT TLRKRVVKNPYPVSSLLNTLFSSMMPTVTGQPMSGTDAQVEEVRIYEGTEGLPGDPDVQ FT RTRDQLGRVVSELPHN" FT CDS complement(join(3336..4898,5107..5421)) FT /codon_start=1 FT /product="large T antigen" FT /db_xref="GOA:E0XL34" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003133" FT /db_xref="InterPro:IPR010932" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR017910" FT /db_xref="UniProtKB/TrEMBL:E0XL34" FT /protein_id="ADM88652.1" FT /translation="MDPGSYAELLSLLQLPRNADEKDISRAYRKVALQMHPDKGGNADK FT MKRLNALMEQYRSSGGSSGPDLSCNESPLQSEDEDPEEGPSGESAGSAGYFSQSMPRSP FT PDPDRTPPNSGDSWGTPPKFGRTVVLPEIIEACLLNEKSVQSCPDVHLVCTTQQKMESL FT RVRILQHFTTKGYLRANWREDLAFLLLHLQNTTRVSTIQNFLKKHCTISYCNSRGVKKN FT CFSKLCAAFKDLHDIDIVENHLAEEGPEEKQFNYALLNEFAITKELTDALLLLAVYKRF FT ATPIKECLECKASRRPKDNPRNSHPTLHDDHHKNAKIFCTLKDQKRICQCAVDCVLAER FT RYKAYTMTRNEMFAERVGAVLKGLARMLADTEETDNLVCAMLLLNMLIRGNVELLAEII FT ETMVRNPPKQRYYVFKGPVNTGKTTLAAGLLNLLGGSTLNVNGNPERLPFELGCAIDCF FT AVLFEDVKGQPEGDKSLPSGMGMLNLDNLRDHLDGYVPVNLERKHQNKVSQIFPPGIIT FT CNQYVIPHTVRVRCRQVVDFTPNPEYAQALDANLDITEGRYLTKAETVLGLLLVTPETE FT GRVKKTLLLEHKLTVEALKIEFDRRCMKYSYNLREGKAYFAPDEEYSTP" FT CDS complement(4918..5421) FT /codon_start=1 FT /product="small t antigen" FT /db_xref="GOA:E0XL35" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003095" FT /db_xref="UniProtKB/TrEMBL:E0XL35" FT /protein_id="ADM88651.1" FT /translation="MDPGSYAELLSLLQLPRNADEKDISRAYRKVALQMHPDKGGNADK FT MKRLNALMEQYRSSGGSSGPDLSCNESPLQSEDEDPEEGPSGESAGSAGYFSQSMPRSP FT PVSSQEYISAYMKLLKFKMSMDAFMRHCERRKQCLTPEFGRMAENYYAIPWGVFGRLFK FT ETDL" XX SQ Sequence 5421 BP; 1309 A; 1324 C; 1338 G; 1450 T; 0 other; tttttgaccg cgtggcagtg gggtcagatt ggcgccaact ttttttcctt tgctatagca 60 tatcttgcca gagcacacag acaaaaagta gtttgagccc tacgtcacct accatgtttg 120 gtcagtaggg gcggtgcagg gttgcatgtg tgtgtgattg gtccacgtca aacgcgtcac 180 acagcccata aaaggcagtg cctcttaatt ctagcacaga cagttttgta gcgggaataa 240 gtgtttaaat ctctgtcctc caatcaaggg ccaggtaagc gggaatggcc agccgacctg 300 acgacacttc ctctgtaagt gcttacccct tcttacgtgc ttcctcagga tgccgccagt 360 ggggttcttt aactgggacc tttacgcgga actcgctttt atcctttttg tttgttattt 420 ctgttactct gttttgctcc gctgcctaat ggatttcctg ggggtcccga cgccgggctt 480 ctttaatgta acaccatggt tctggcaagg acctcgcccg cccgagcccc cgccttctct 540 gaactaatac gctgttttgc atgtatggct cagatcccct tccccaccac ccccgttcct 600 gacaacgtga tctgtatgta gggcccatat ccccttccct ctgccacccc cggccctgac 660 agcgccgacg gggcggctga agatggctcc tcgacaagtg gtgaagaagt ggagtgttct 720 tttgtcgtag taagtactgg ccgctggctg ctatcccttt tccgccttgg ctgtcagcca 780 tatggctgtc cagctggact caattagaat tgttttcaga accttaagcc gaagaaggag 840 aggcccaggc cttataagag acctgttcgt cgaaaccttg agaaggaatt tgaggagctg 900 gagaagaaaa taaaagaact cgaggagaaa ataaaggaag aagaggagaa ggaaaacatt 960 ccgccgtctg ctccggaacc tgctgtcgtc accgcctcgc cgccagccca accacagccg 1020 accccaaccc cccccgccga cacatcagcc taggttggtg ttaggttgga tatgttttcc 1080 catgggtgct attgttagca tcttcgttgc tattggtgaa gctgtagcag ccacaggact 1140 tgctgctgaa accattatat ctggggaggc ggcagcaata ttaggggcac agatatcatc 1200 tctggcggct gaggggttta caaccgcgga ggccttaagt actttaggtc tcacacctga 1260 attatttgca ttcaccacat cccttgcaag tgctgcagag tcaggagggg ctttgtggac 1320 aggaatagct tcgggattgt atagcctagg tggggcaggg gtttcgggta ttgcaggtgg 1380 cttgcaggga ggcattgcca cagcagctgc tggtctggta cgtttcccta acatttccaa 1440 acagagacac gagatggcct tacagatttg gcaacctctg gactggcttt acccagaggc 1500 ggagtggttg tacaatgcct accattactt cgacccatat tcctggctcc cctctctgat 1560 tgaccaattg ggatactact tctgggagta tgtagaacgt acaggtcaga ggcaacttgc 1620 gtcacaggcc accgccgtag ccgtccgtgc tactaatagg gcttggtaca cactgacgga 1680 gcagataagt aatgctgggt ggttcattag gaatgggtat tatgctctgg agcactatta 1740 tcgagtgctc cctcccagat ttggtcctcc taggttgagg tcatatttag aagctaatag 1800 ggaaaatgtc ttcatagatc ctcctgatat gggaagtgag acctcagaca acagatttga 1860 gggagacttt ttaaagagac tcaagaagat atttagtaga gagcaggaga gtggagaacg 1920 tgtctacaag tcacgtcctc ctggtggtgc tgagcaaatg gtgacacctg actggcttct 1980 ccctctaatt ttaggtctgt tgggcgacct gactcctacg tttgctgctg atatcaggag 2040 gtatggctcc gagaacagga aaaggaaggc taccagcacc agtaccccgc ctgttaataa 2100 aaggaggaat cgaggtacta ggcctaaaga ccggagaaga ctcaataaca acagtcgagg 2160 cctatctaaa tcccagaatg ggaaccggta atggagcata ttcagcagca ttaacagtag 2220 ggtcagctac gtctgacaaa cctaaaaaat cagaattgcc atgttatagc tgtgctaaga 2280 taactttacc aactctgaac gatgacctta caggtagtac tatgcttatg tgggaggcag 2340 tgtctgtgaa aaccgaggtg gtgggtgtct cttccctgac aaatgtgcat tcggggggtc 2400 tgaataacag acaggttgga ggttatggtg caggtcttcc tgtcagtggc ctaaatttcc 2460 atttctttgc tgttggagga gagccattag atatgcaagg gtatgtgcaa agcgtaaata 2520 cagaatatcc tgcagggact acagggccga aggaagggca cactagtaat gctgacagtg 2580 atgtcctcaa ccctatctat aaggccaagc taactgctga tggtgtgttc cctgtggaga 2640 gttggtgccc tgacccatcg aggaatgaaa acaccagata ctttggtcac cttacagggg 2700 gagtgggagc accacctgta atacagttca ctaacactgt gaccactatt ctgctggatg 2760 agaacggggt gggtcccctc tgtaagggag acgggttgta ccttacatct gcagatatat 2820 gtggcctcct cactgatcag gacagcaagc agtatttcag gggcctggcc agatacttca 2880 atgtgaccct taggaaacga gttgtgaaaa acccctatcc tgtgtcttct ttgctgaaca 2940 cactcttctc ctcaatgatg cccactgtga caggccagcc tatgtctggc accgatgctc 3000 aggttgaaga agtccggatt tatgaaggta cagagggcct accaggtgat cctgatgttc 3060 agagaactag ggatcaactg ggccgcgtgg tcagtgaact tcctcataac tgaaaattct 3120 tacccccccc aatatctaga cccccctggg ttctgaccta tgggtctgag cattaacccc 3180 gcaaaatgtg gaatttctcc tccttaccgt ttgggaggga ggggctggca aattcatgca 3240 tttctgggcc tatacatgta gcgcgcgctt ttagccggaa gtgaagaaca ctaattgtaa 3300 caagcctttt attggaataa aggttctcgc tgctatcagg gtgtagagta ttcttcatcg 3360 ggtgcaaaat acgcttttcc ctcacgtagg ttataggagt acttcatgca ccggcggtcg 3420 aactcgatct tcagtgcttc aacagtcagc ttatgctcca ggagtaatgt cttcttaact 3480 ctaccttcag tctctggagt tacaagtagc aaacctaata cagtctctgc cttcgttaga 3540 tatcgtccct cggtaatatc taaatttgca tccaaggctt gtgcatattc tgggttgggg 3600 gtaaaatcaa cgacctgcct acatctcact ctcacagtgt ggggtattac atactgattg 3660 caggtaatga tacctggtgg gaagatctgt gagaccttgt tctgatgctt cctctcaaga 3720 ttcacaggta catagccatc caggtgatct ctaagattgt ctaaattcag catgcccatg 3780 cctgacggga gtgatttatc cccctcaggc tgtcccttta catcctcgaa aagcacagca 3840 aagcagtcta tagcacaccc tagctcgaag ggcaacctct caggattgcc attaacattc 3900 agtgtagaac cccccagaag gtttagcagg ccagctgcta gggtggtctt ccctgtattc 3960 acaggcccct tgaacacata gtaccgctgt ttaggggggt tcctcaccat ggtctcaatg 4020 atctctgcaa gaagctctac attaccccta attagcatgt tcagcaatag catagcacaa 4080 acaaggttat cagtttcctc tgtgtccgca agcatacgtg ctaacccctt aagtacagcc 4140 cccaccctct cagcaaacat ttcattacgt gtcatagtgt atgctttgta tcgtctttct 4200 gcaaggacac agtctacagc acactgacat atcctcttct gatccttcaa ggtacagaat 4260 atctttgcat tcttatggtg gtcgtcatgt agagtggggt ggctgttcct ggggttgtct 4320 ttaggccttc tagaggcttt gcactctagg cactccttga taggtgttgc aaacctcttg 4380 tacacagcta ggagcaaaag tgcatccgtc aactcctttg taattgcaaa ctcattaagc 4440 agggcataat taaattgttt ttcctcgggc ccttcctctg caaggtggtt ctcaacaatg 4500 tctatgtcat ggaggtcttt gaatgctgca cagagcttgg agaagcagtt cttcttcact 4560 cctctcgaat tgcaatagga gatggtacaa tgttttttta ggaagttctg tattgtggag 4620 acccttgttg tattttgcag gtgtaggaga aggaaagcca ggtcctccct ccagttagcc 4680 cgtaggtagc ccttggtagt aaaatgctgc aatatccgga ccctgagaga ttccattttt 4740 tgctgggttg tgcaaacgag gtgtacatct gggcagctct gcacagattt ctcatttaat 4800 agacaggctt caatgatttc agggagcaca acagtacggc caaatttggg tggggtcccc 4860 caggagtctc ctgagttagg gggggtccgg tcagggtcct acgggcaaaa cacatcctta 4920 aagatccgtc tctttgaaca gtctcccgaa caccccccat ggaattgcat agtagttttc 4980 agccatcctg ccaaattcag gggtcaggca ttgcttccta cgttcacaat gcctcataaa 5040 ggcgtccatg gacattttaa atttcaatag cttcatatat gcactaatat attcttgaga 5100 acttacgggt gggctcctag gcatagactg ggagaagtat cctgcagatc ctgcagattc 5160 tccactgggt ccttcctcag gatcctcgtc ctccgactgc agaggggatt cattgcatga 5220 taaatccggc ccggaagacc cccccgagct ccgatactgc tccatgagtg cattgagcct 5280 tttcatttta tctgcattgc cccctttatc agggtgcatt tgcagagcaa cttttctgta 5340 tgctctggag atatccttct catcagcgtt tcggggtaat tgcaataggc tcaggagctc 5400 agcataagac cccggatcca t 5421 //