ID GU220391; SV 1; circular; genomic DNA; STD; VRL; 7737 BP. XX AC GU220391; XX DT 13-MAY-2010 (Rel. 104, Created) DT 13-MAY-2010 (Rel. 104, Last updated, Version 1) XX DE Bettongia penicillata papillomavirus, complete genome. XX KW . XX OS Bettongia penicillata papillomavirus 1 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC unclassified Papillomaviridae. XX RN [1] RP 1-7737 RX DOI; 10.1128/JVI.02635-09. RX PUBMED; 20200246. RA Bennett M.D., Reiss A., Stevens H., Heylen E., Van Ranst M., Wayne A., RA Slaven M., Mills J.N., Warren K.S., O'Hara A.J., Nicholls P.K.; RT "The first complete papillomavirus genome characterized from a marsupial RT host: a novel isolate from Bettongia penicillata"; RL J. Virol. 84(10):5448-5453(2010). XX RN [2] RP 1-7737 RA Bennett M.D., Stevens H.; RT ; RL Submitted (19-NOV-2009) to the INSDC. RL Veterinary Clinical Pathology, Murdoch University, South Street, Murdoch, RL WA 6150, Australia XX FH Key Location/Qualifiers FH FT source 1..7737 FT /organism="Bettongia penicillata papillomavirus 1" FT /host="Bettongia penicillata" FT /mol_type="genomic DNA" FT /country="Australia:WA" FT /isolation_source="papillomatous lesions" FT /collection_date="21-May-2008" FT /identified_by="Mark D Bennett" FT /note="type: 1" FT /db_xref="taxon:759701" FT CDS 28..471 FT /codon_start=1 FT /product="E6" FT /db_xref="GOA:D6N1B8" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/TrEMBL:D6N1B8" FT /protein_id="ADG21984.1" FT /translation="MEPTEDTLALPRSLRELGNLLGLNPYEIPITCIFCKNELTELDKY FT DFERKNFNLHWTGFCCKAICIDCCLAAAKEDFIFHFEERADVFNLYDRGFSLLFLDSCC FT VLCLKQLDLSERLSHTWCQLPLYCVRGQWRGYCDFCKDGLETK" FT CDS 468..740 FT /codon_start=1 FT /product="E7" FT /db_xref="GOA:D6N1B9" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:D6N1B9" FT /protein_id="ADG21985.1" FT /translation="MIGDRIDLKDIVLQLDQVVPTSEEESTTGDEVEHRPYKYYDVTVS FT CATCSRRISFCILANPETVSGFFNYFFEDVRPVCLPCVQKGENGQ" FT CDS 730..2520 FT /codon_start=1 FT /product="E1" FT /db_xref="GOA:D6N1C0" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:D6N1C0" FT /protein_id="ADG21986.1" FT /translation="MDNKGTSSASEFILEEAFCSDTSMEEDVNSDSSISNLIDDTEQEE FT QVGISRELYMQQQREESAAHLNALKRKYFRESQNTHTHSTPKKKATGSIEDSGVGCSYE FT INNFSGAQQVPGGEDSTDGVLCVNRNVGNMAPNDVRDLLQCKNARVSMFVKFKEAFEIS FT FADLTRTFKSNKTCCAEWVVGTFGVSPDVVDVGKVLLEKHCEYLQICYRPTNIGYIVLG FT LFTFKNVKCRETVLKLFSTTYNVDSKYIMCEPPKTRSVPAAVYWFNNGTRQGVAKAGNT FT PEWILTQTLLTHQSGKEQFDLSKMVQWAYDNELADEADIAYNYAKYAETDTNAAAWLNT FT NSQAKHVKDCSVMVRHYRRAEMKSMSFSQWVHRRIQEHENIGSWKDIVKFLRYQNIAPP FT HFISTLKLLFKGTPKKNCLVVYGPPDTGKTQFCMSLMKFMRGRVLSFCNSKSHFWLQPL FT TECKIALIDDATYPCWQYIDTYLRNGLDGNPVTLDCKHKAPVQTKFPPLLITTNLDIAG FT DAKWKYLHSRIKQFNFENEFPLTDNGLPLFDLSASNWASFLQQMWRPLDLSDQEEDEDK FT ENGDPDSSFRCCARKINGSF" FT CDS 2462..3826 FT /codon_start=1 FT /product="E2" FT /db_xref="GOA:D6N1C1" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:D6N1C1" FT /protein_id="ADG21987.1" FT /translation="METLTARFDAVQGKLMDLFEKDSNDIVDHCEYWSLIRQENIMMNF FT GRKKGLKTIGLQPLPLSAVSEAQAKIAIEMELVVKTLKNSPFGDEKWTFSDTSYETYVS FT PPQRCFKKLPYLVKIKHGPNMDNVDVYTGWGKIYKQDCQGEWTVVTGETDETGCFYVED FT DCKVYYKVFDIDSHNYDMTFKHPLNSDFVRKTHRGRGQGEQDSTPQTPSSQPERTKERK FT TGPRVRTSGTYTPPVGPLGGAQPIPSSAPKETPDGAHPGGGGVPRGVGGRCDQPGGSGG FT PRKRAWEEGGGGGEEEEGEAPRTSKKPAGGTDRPLEGQTGGRPGEVTSTTQRDCREGPS FT SCPVTCPVTCPETSCPVTSCPVTSPETQCPVTQCPVLLAQGDANILKCWRYRLETKHKS FT TYKHISSTWYWTAGGRGQGKHRMLIAFDSAQQEKDFLLLKLPKGVFVSKGWFQNL" FT CDS <3006..3494 FT /codon_start=1 FT /product="E4" FT /note="translation start site not determined" FT /db_xref="UniProtKB/TrEMBL:D6N1C2" FT /protein_id="ADG21988.1" FT /translation="HSNILSILILLERHTVDEDKENKTPLRRPPPPNLNGPKRERQDQE FT SGLRGPTRRRLGPWEEHSPSRLRPPRKPLTEPIPEEEEFPEESGDGAINLVDQVDPEKE FT RGKKEEGEEKKKKEKPPGPVKSLLEELIDLWKDKLEEDLEKLLQQLRETVEKALVLVL" FT CDS 3905..5476 FT /codon_start=1 FT /product="L2" FT /db_xref="GOA:D6N1C3" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:D6N1C3" FT /protein_id="ADG21989.1" FT /translation="MSVRRRKRASPEDIYSTCKISGTCPPDIIPKVENDTWADRLLKWF FT SSVVYFGNLGIGTGRGSGGASGYIPLGDPQGVPITPGGTLLRPSVPTIDPVGPGDVVPI FT DVLNPEAPSVFTPTEGPFDVAGGDTLPPTMSTDIELTDLSARPGPAVENEESAILDVAP FT TAPKKTRSRVTVSHHDNHVFEGLQRSADPLHDSSSAPHIIFESRGGGFSVGGTPEDVEL FT AVFRVSGSGDRDGYFSSTPIDGPTPVRAPLPRRVPRISVGDQAFLDRPSSLVQFQYDNP FT VFDPDGSLHFTLPSRPRAAPDPAFTDIISLGDMRFDLTSDGRVRVSREGFRGGMRTRSA FT LRLQAQVEFQHTLSTIDGGEELELRVFGSPNVTLQDPNFVDVSLEDPAVLGSELYPESL FT LEEEEFVDFSSSRLSFFGDRTSPTPLFTSSGVQIIFPPTGATISNLFPQDVTVGQGIRP FT RPLTPPSDPGAPPIEPPEPPIEPPFEPPTEPDPAETGGNFEPSLRKRKRKRVEVASRTY FT SLRRKR" FT CDS 5498..7009 FT /codon_start=1 FT /product="L1" FT /db_xref="GOA:D6N1C4" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:D6N1C4" FT /protein_id="ADG21990.1" FT /translation="MALWQPSTNKIYLPPPNPSARILNTEEFVKRTDIYYHAGSDRLLT FT VGHPYFPVHSKVDIQKVVVPKVSGSQYRVFRVKLPDPNYFAITSPIYNPEKERLVWGVV FT GMQVGRGQPITVGSSGNPYYNKVKDTENPNNYQLGSKDDRQNVSHDPKQVQLCVIGCTP FT CIGEHWDRAIACADQVVNEGDCPPIELVNSTIEDGNMCDIGYGAMNFKGLQENRSEVPL FT DISQDTCKYPDFLKMSNEKYGNSLFFFTRREQLYSRHFWVRGGVEGDDVPKEYFLPGND FT DQAQKAIASAVYSATPSGSLVSSDSQIFNRPFWLQRAQGANNGILWQNELFVTVVDNTR FT NCNFTISVKAEAGEVEKYDKDKFKEYLRHVEEYELSFIVQLCKVPLDPDILAHLNAMDP FT TILDNWNLGFVPAPSQSLEDTYRYITSLATRCPDRNPPKEKKDPYEGKSFWTVDLTERL FT SQELDQYPLGRKFIFQTAVRRPVSLKRKSTSRPKTSVAQKKRRSN" FT misc_feature 7010..7404 FT /note="untranscribed regulatory region (non-coding region) FT predicted to contain the origin of DNA replication and FT several control elements" XX SQ Sequence 7737 BP; 2259 A; 1555 C; 1865 G; 2058 T; 0 other; aggggaacaa aaaatttaat cggtagaatg gagcccacag aggatacact tgcgttgccg 60 aggagcttaa gggagctagg gaatttatta ggcctaaatc cttatgagat acctataaca 120 tgtatctttt gtaaaaatga gcttactgag ctagacaaat acgactttga aagaaagaat 180 ttcaatcttc attggactgg cttttgctgt aaggctattt gtattgattg ttgtttggcg 240 gcagccaaag aagactttat ttttcacttt gaggaaaggg cagatgtttt taacctctat 300 gacagagggt tttctttatt gtttttagat agttgttgtg tactgtgttt aaagcaattg 360 gacttatcag agagactctc acatacatgg tgccaattgc ctctgtattg tgttagagga 420 caatggagag gttattgtga tttttgtaag gacggcctag agacaaaatg ataggggaca 480 gaatagacct aaaagacata gttttacaac tagaccaggt agttccaact tcggaggagg 540 agtccacaac aggcgatgag gtggagcacc gtccttacaa gtactatgat gtgactgtgt 600 cctgtgcaac ctgttctaga agaatatcat tctgcatttt agctaatcca gagactgtgt 660 caggattctt caattacttc tttgaagacg tgagacctgt gtgcctcccc tgcgtccaaa 720 aaggagaaaa tggacaataa aggtacctca tcagcttcag aatttatttt agaagaggca 780 ttttgttctg atacctcaat ggaggaggat gtaaattcag atagttcgat cagtaattta 840 atagatgata cagaacagga ggaacaggtg ggaatttccc gtgaactgta catgcagcaa 900 caaagagaag aatctgcagc ccacttaaat gcgctaaaac gaaagtactt tagggagagt 960 caaaatacgc atacgcatag cactccgaaa aagaaagcaa caggatcaat agaggatagt 1020 ggtgtgggct gtagctatga aattaataat ttttctggag cgcaacaggt accggggggg 1080 gaggatagta cggatggtgt gttatgtgtt aaccgaaatg tggggaatat ggcgcctaat 1140 gatgtacggg atctcttaca atgtaaaaat gcgcgtgtta gcatgtttgt taagtttaaa 1200 gaagcctttg agattagctt tgccgaccta acgagaacat tcaaaagtaa taagacgtgt 1260 tgtgccgagt gggtggtggg gacgtttggg gtatcaccgg acgtggtaga tgtgggcaaa 1320 gtactgctag aaaagcactg tgaatatttg cagatatgct acaggcccac aaacattggt 1380 tatatagttc tcggattgtt tacatttaaa aatgttaaat gtagagaaac tgttttaaag 1440 ctatttagta caacctacaa cgtagacagt aaatatatta tgtgtgagcc cccaaagaca 1500 agaagtgttc ctgctgcagt atattggttt aacaatggga ctaggcaggg tgtagctaaa 1560 gccggaaata cacccgaatg gatactcaca cagactttac ttacccacca atcggggaaa 1620 gagcagtttg acctttctaa aatggttcag tgggcatatg acaatgaact tgcagatgag 1680 gctgacattg cttataatta tgcgaaatat gcagaaacag atacaaatgc agccgcctgg 1740 ttaaatacca atagtcaggc caagcatgtg aaagattgct ctgttatggt caggcattat 1800 agaagagcag aaatgaaatc aatgtcattt tcacagtggg tacacaggag aatccaggaa 1860 catgaaaaca ttggttcatg gaaagatatt gtaaagttcc tgagatacca gaacatagcc 1920 cccccgcact ttataagcac cttaaaatta ctatttaaag gcaccccaaa aaagaactgt 1980 ctggttgtat atggtccccc agatacaggg aaaacacagt tttgtatgag tcttatgaaa 2040 tttatgcgag gcagggtact gtcattctgt aacagcaaaa gccatttttg gttacagcca 2100 ttaactgaat gtaaaattgc tttaattgat gatgccacat atccatgctg gcagtatata 2160 gacacatatt taaggaatgg gctagatgga aatccggtga cactagactg taaacacaaa 2220 gctccggtgc aaacaaaatt ccccccctta ttgataacta ccaacttgga tattgcagga 2280 gatgcaaaat ggaagtatct ccatagtaga attaaacaat ttaattttga aaatgagttt 2340 ccattaaccg ataatggcct acctcttttt gatctctcag caagtaactg ggcatccttc 2400 cttcagcaaa tgtggagacc cctagactta agtgatcagg aagaggacga ggacaaagaa 2460 aatggagacc ctgacagctc gtttcgatgc tgtgcaagga aaattaatgg atctttttga 2520 aaaagattct aatgacattg tggaccattg tgaatattgg tcattgataa gacaggaaaa 2580 tattatgatg aactttggta gaaaaaaagg cctaaagact atagggttgc aacccctacc 2640 actttctgca gtgtctgagg cacaagctaa gattgccatt gaaatggaac ttgtagtaaa 2700 gaccctaaag aactcaccct tcggggatga gaaatggaca ttttcagaca ctagttatga 2760 gacctatgtt agccccccac aaagatgttt caaaaaactt ccctatttgg tgaaaattaa 2820 acatggacca aacatggaca atgtggatgt ttacactgga tggggaaaaa tttataagca 2880 ggactgtcaa ggagaatgga cagtggttac aggggaaacc gatgaaaccg ggtgctttta 2940 tgtggaagat gattgtaaag tgtactataa agtatttgat attgacagtc ataattatga 3000 catgacattc aaacatcctc tcaattctga ttttgttaga aagacacacc gtggacgagg 3060 acaaggagaa caagactcca ctccgcagac cccctcctcc caacctgaac ggaccaaaga 3120 gagaaagaca ggaccaagag tccggacttc ggggacctac acgccgccgg ttgggcccct 3180 gggaggagca cagcccatcc cgtcttcggc ccccaaggaa acccctgacg gagcccatcc 3240 cggaggagga ggagttccca gaggagtcgg gggacggtgc gatcaacctg gtggatcagg 3300 tggacccaga aaaagagcgt gggaagaagg aggaggggga ggagaagaag aagaaggaga 3360 agcccccagg accagtaaaa agcctgctgg aggaactgat agacctctgg aaggacaaac 3420 tggaggaaga cctggagaag ttacttcaac aactcagaga gactgtagag aaggccctag 3480 ttcttgtcct gtaacctgtc ctgtaacctg tcctgaaacc tcctgtcctg taacctcctg 3540 tcctgtaacc agtcctgaaa cccagtgtcc tgtaacccag tgtccagtgt tgcttgccca 3600 aggtgatgca aatattctta aatgttggag atacaggcta gaaactaaac ataagtctac 3660 ctataaacat atttcctcaa catggtattg gactgcaggt ggtaggggtc aggggaaaca 3720 tagaatgcta atagcctttg attctgcaca gcaagagaaa gactttctgt tactgaagtt 3780 acctaaaggg gtgtttgtgt ctaaggggtg gtttcagaac ttgtaacctc atgcttgtaa 3840 atagcagctt gtttgtaaat gtatgtagat agctttcgct taataaacat cacatatatg 3900 caacatgagt gtccggagaa ggaagagggc ctcaccagag gatatataca gcacatgcaa 3960 aatatcaggc acatgtcccc ctgacattat tcccaaagtg gaaaatgaca catgggctga 4020 cagactgcta aaatggttca gctctgttgt gtattttgga aacctgggca ttgggactgg 4080 gcgtgggtct gggggtgcct cagggtacat accacttggg gaccctcaag gtgtcccaat 4140 tactcctggt ggtacactac ttaggccctc ggttccaacc attgaccctg taggccctgg 4200 ggatgttgtt cctatagatg tattgaatcc tgaggcaccc tcggtgttca caccaaccga 4260 gggtcccttc gatgtagctg ggggagacac actccctcct actatgtcca ctgacataga 4320 actgaccgat ctctcagcta ggcctggtcc cgcagtggaa aacgaggaga gtgcaattct 4380 tgatgttgcc ccaacagcac ccaagaaaac taggagcaga gtcacagtgt cccaccatga 4440 taatcatgta ttcgagggtc ttcagcgttc cgctgacccc ttgcatgaca gctctagtgc 4500 ccctcacatt atatttgaaa gtaggggtgg tggcttttct gtagggggga cacctgaaga 4560 tgttgagctt gctgtcttcc gggtgtcagg gtctggggat agggatgggt atttctctag 4620 cacacccata gatggtccta cccctgtcag ggccccattg cctaggaggg ttcctaggat 4680 ttcagttggg gaccaagcat ttcttgacag gcctagttca cttgtgcagt tccagtatga 4740 caatcccgta tttgatcctg acggatcact acattttact ttacctagta ggcctagagc 4800 tgcacctgac cctgcattca ctgatataat atctctgggg gacatgcgtt ttgacctcac 4860 ctctgatggt agggtcaggg ttagcaggga gggattcagg ggtgggatga ggacacgcag 4920 tgcccttaga ttgcaggcac aggttgaatt ccaacataca ctgagtacaa ttgatggtgg 4980 tgaggaacta gaactacgtg tgtttgggtc cccaaatgtg accttgcaag accccaattt 5040 tgtagatgtt tctctggagg accccgctgt actaggctct gagttatacc cggagtccct 5100 gttggaagag gaagaatttg tagactttag tagctccaga ttatcttttt ttggggatag 5160 gacatctcct actcctttgt ttacatcttc tggagtgcaa ataatcttcc cgccaacagg 5220 tgcaactatt tccaacttat ttccacaaga tgtcactgta ggacaaggaa taaggcctag 5280 gcccttaact cctccttctg accccggtgc acctcccatt gaacctcctg aacctcccat 5340 tgaacctcct tttgaacctc ccactgaacc cgatcccgcg gaaactggcg ggaattttga 5400 acctagttta cggaagcgta agcgaaaacg tgttgaggta gctagccgga cttactctct 5460 aaggcggaag cgttaatttt tcttccatct tttacagatg gccctgtggc aaccgagtac 5520 aaacaaaatc tatctcccac cacccaatcc ttctgcacgc atcttaaata cagaagaatt 5580 tgtgaaaagg acagatatct actatcatgc tggtagcgat cggctattaa ctgtgggtca 5640 cccctatttc cctgtacatt ctaaggtaga cattcaaaag gttgttgttc ccaaggtatc 5700 aggaagccag tatagggtat tcagggtaaa gttgccggac cccaattatt tcgctattac 5760 tagtcccatc tataaccccg agaaggaaag gttggtgtgg ggggtggtgg gcatgcaggt 5820 tgggagggga cagcctatta cagttgggag ctctggcaac ccctattaca acaaggttaa 5880 agatactgag aatcctaaca attatcaatt aggatcgaag gatgacaggc agaatgtgtc 5940 ccacgatccc aaacaggtac agctttgtgt gatagggtgc accccttgca ttggagaaca 6000 ctgggacagg gcaattgcat gtgcggacca agtggttaat gagggtgatt gtcccccaat 6060 tgagcttgta aattcaacta ttgaggatgg gaatatgtgt gacataggat atggggctat 6120 gaatttcaaa gggctgcaag agaataggtc tgaggtgcct ttggatataa gtcaggatac 6180 ctgcaagtat ccagattttc ttaaaatgtc caatgaaaag tatggcaact ctttattctt 6240 tttcactaga agggagcagc tatatagtag gcatttttgg gtaagaggtg gtgtggaagg 6300 ggatgatgtt cccaaagaat actttcttcc tgggaacgat gaccaggctc agaaggccat 6360 agcatcagcg gtgtattctg caacacctag tgggtcatta gtatcatcag acagccagat 6420 attcaacagg cctttctggc tgcagagggc ccagggtgca aacaatggta ttttgtggca 6480 gaatgaactg tttgtgactg ttgttgacaa tacaagaaat tgcaatttta caatttcagt 6540 gaaggccgaa gcaggggagg tggaaaaata tgacaaagat aagtttaagg aataccttag 6600 acatgttgag gagtatgagt tgtctttcat tgtgcagctt tgtaaggttc cccttgaccc 6660 tgatatatta gcacacttga atgcaatgga tcccaccatt ctggacaatt ggaacctagg 6720 atttgtacct gctccttctc aaagcttaga ggatacctat aggtatataa catcacttgc 6780 taccaggtgt cctgatagga accccccaaa ggaaaagaag gatccgtatg aggggaaatc 6840 tttttggacg gttgacctta ctgaaaggct gtcacaagag ctagaccaat acccacttgg 6900 ccgtaagttt attttccaga ctgcagtaag gcgccctgtg tccttgaaaa ggaagtccac 6960 aagtaggcca aagaccagtg ttgcacaaaa gaaacgcaga agtaattagt taattacatg 7020 tttatgtgga ttattgtata gcaacaataa ttgtattgat tatgtattgc actactctgt 7080 attaatgtga acattcctac ctcatgtacc cccaatctac ctcaataaag atttcccaca 7140 gaatactgtc tatgttctca cggtacctgg ttaggtattt acccgacggg gtaaacagtg 7200 ggtttatgta tccaggtggt gttgtgttgg ggggagctgt aaccaagggt gtttacccac 7260 ataggtatgt gtttatgttc ccacagcacc tgcatagata ttgtagccgg cagggtaaat 7320 atttaatccg gggggttgcg ggggattatc cgtctggtta gtttaacata ccctacgggg 7380 tacacagatg ctaggtattt ttagaatatg cgtctcattg gttatatttt cgcgccaatg 7440 ctttttacat gtatcataca tgggtaggtt tgttgactca gttgtctcct acacaccctg 7500 ccggctattt ggtgattgac atctggcaaa aaaggattag gagcttacaa gttcctacaa 7560 agcttaccct gtcagcattt taaacacccc cacctagaac ctaataggta ccagccgttt 7620 tgcctggggc ccctgcacct cattgggtaa gtacatatat ctatctagat aattgttgtt 7680 aacaactatc agtataatca agttttagcc tgtatgtacc ccattagaaa agtataa 7737 //