ID GU214704; SV 1; linear; genomic DNA; STD; VRL; 5257 BP. XX AC GU214704; XX DT 08-MAR-2010 (Rel. 104, Created) DT 08-MAR-2010 (Rel. 104, Last updated, Version 1) XX DE Chicken parvovirus ABU-P1, complete genome. XX KW . XX OS Chicken parvovirus ABU-P1 OC Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Parvovirus; OC unclassified Parvovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-5257 RX DOI; 10.1016/j.virol.2009.12.027. RX PUBMED; 20097398. RA Day J.M., Zsak L.; RT "Determination and analysis of the full-length chicken parvovirus genome"; RL Virology 399(1):59-64(2010). XX RN [2] RP 1-5257 RA Day J.M., Zsak L.; RT ; RL Submitted (18-NOV-2009) to the INSDC. RL Southeast Poultry Research Laboratory, United States Department of RL Agriculture, 934 College Station Road, Athens, GA 30605, USA XX FH Key Location/Qualifiers FH FT source 1..5257 FT /organism="Chicken parvovirus ABU-P1" FT /strain="ABU-P1" FT /mol_type="genomic DNA" FT /country="Hungary" FT /db_xref="taxon:717641" FT LTR 1..206 FT /note="5' direct terminal repeat" FT gene 411..2495 FT /gene="NS1" FT CDS 411..2495 FT /codon_start=1 FT /gene="NS1" FT /product="NS1" FT /note="nonstructural protein" FT /db_xref="GOA:D3X6W7" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="UniProtKB/TrEMBL:D3X6W7" FT /protein_id="ADD22705.1" FT /translation="MAFPTRGGFSAILNLPSDLIVGQKNMPVFECVTAGYTSPDSGEFV FT ASRFPPNHELRQEIRNFIGNPEWDDPDLTWIDFHIQLAKHAIDVETKLNPNLQIFWQME FT KSSQSGRYHLHLLFVEGCTSRQITWIVKRMRRELCNKAAEMLHMFCPDFPKSQIWGSLV FT NIQNAMLSLNRGYSPRIGKPIPQPVNPYSFLKYYMFNSAKMSFLRGATPKLAEKLPIGT FT RYARFEGSPDLDEGPEIPSQELTPGDTLPVCYVSTETGWGNGGGETVIKTSIIEKLCME FT ALRLCRENHIFTMKAFKLKFPDKFMQFSSRNQGLVKLEETINLYCETIINEHDAWEIAK FT SIHGDVDTADLDDNLAIRLCSYQGYSPKYVARLILCWLSGQAGKKNALYFHGPANTGKT FT MMAESICKMVQIYGNVNHNNKNFPLNDCHNKAVLWWEECSMTEEHVESAKCIMGGSSVR FT IDKKNQDSVLLCKTPIVITSNNDITQVSSRNAISTVHAAAIRARCLKFTFNNWLTSNWG FT LITVDQMYQFLCWGELEGIPTVDSLLKDHPEFNGTLPYNQPKGKFCADCVNQFSTATNL FT TVCPACSGWTRKPFSEEEEPPYTGSESGLFEKANEGKNEVPGIYPVNSGSRLIPEAPIL FT QKPSTYWETEIPSESSGFPDEPDFTASAKLLLKVDDLHLESDLKVEQDPLECKKCCLVQ FT " FT gene 2696..3001 FT /gene="NP1" FT CDS 2696..3001 FT /codon_start=1 FT /gene="NP1" FT /product="NP1" FT /note="putative" FT /db_xref="UniProtKB/TrEMBL:D3X6W8" FT /protein_id="ADD22706.1" FT /translation="MCWYNANITQIQTVEGDPCTNPDVFHELYFPIKQHAMDARMLKMK FT IEDKIQKGDFTQDIHLDMTLTQCIQTALSDDPAGIWPCVDRLANYCNVILASIGTQ" FT gene 2998..5025 FT /gene="VP1" FT CDS 2998..5025 FT /codon_start=1 FT /gene="VP1" FT /product="VP1" FT /note="minor capsid protein" FT /db_xref="GOA:D3X6W9" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:D3X6W9" FT /protein_id="ADD22707.1" FT /translation="MKYKAPKGYVPSLPTTDEEAYHHTRWWLDHVENYGKNKAIGRGKG FT KARKELTPQQKAERKRFFITQAQKNKKPNYGIPSSSQHKEFFKNHQGAQGGKAKQKTKH FT IENQAPQRQEDPEEGPAPKQPRVEENPYNQEELEEMMADENEPDQSGIPMELSDGPGTV FT GGGGGGGIGHSTGNWNCDTIWAENTCKTYASRHCVCLMRDMDQYKAIGNANGQHGLDTE FT NQTQYFGFSTPWNYIDFNQYSVHFSPRDWQQLVNNYSRWRPRAVHVKIFNLQVIQKTVT FT DSGTQYSNDLTGTIQIFADQEGRYPRLLYPNQTTLMGPFPSNIYYLPQYAYMTSMFNSG FT GPTVSSWWGFPTRESAFYCLDESPSQMLRTGNEWETTFIFPSSTQWCSNKISTVSITQR FT QNPLYDTWNVNGRGDDAKRGNFCTWRSPWYPGPYIYLTDTSAASQRLENLANVAVGPDG FT MPLAPGMPQYRSESDKDEYLHTFWVPKKVKMNEGDIRNAQIDVSTATKVQVDTSTLYNT FT CPRSGYMSTVSQGGAPAPIVWSGCVPGMIWDNRPATYFDPIWQQFPETDEQFKIISQLG FT GIPVKESPGHIFVKVTPKPTGAANGLIDEYCTFTCTVEIEWELEPLNTHRWNMRSMISY FT ETTDAKAGRQIVDENGQYQVNVNSADITRLYMTKRAPRTN" FT gene 3415..5025 FT /gene="VP2" FT CDS 3415..5025 FT /codon_start=1 FT /gene="VP2" FT /product="VP2" FT /note="major capsid protein" FT /db_xref="GOA:D3X6X0" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:D3X6X0" FT /protein_id="ADD22708.1" FT /translation="MMADENEPDQSGIPMELSDGPGTVGGGGGGGIGHSTGNWNCDTIW FT AENTCKTYASRHCVCLMRDMDQYKAIGNANGQHGLDTENQTQYFGFSTPWNYIDFNQYS FT VHFSPRDWQQLVNNYSRWRPRAVHVKIFNLQVIQKTVTDSGTQYSNDLTGTIQIFADQE FT GRYPRLLYPNQTTLMGPFPSNIYYLPQYAYMTSMFNSGGPTVSSWWGFPTRESAFYCLD FT ESPSQMLRTGNEWETTFIFPSSTQWCSNKISTVSITQRQNPLYDTWNVNGRGDDAKRGN FT FCTWRSPWYPGPYIYLTDTSAASQRLENLANVAVGPDGMPLAPGMPQYRSESDKDEYLH FT TFWVPKKVKMNEGDIRNAQIDVSTATKVQVDTSTLYNTCPRSGYMSTVSQGGAPAPIVW FT SGCVPGMIWDNRPATYFDPIWQQFPETDEQFKIISQLGGIPVKESPGHIFVKVTPKPTG FT AANGLIDEYCTFTCTVEIEWELEPLNTHRWNMRSMISYETTDAKAGRQIVDENGQYQVN FT VNSADITRLYMTKRAPRTN" FT LTR 5052..5257 FT /note="3' direct terminal repeat" XX SQ Sequence 5257 BP; 1701 A; 1136 C; 1154 G; 1266 T; 0 other; gagtcttgct ttctctagtc aacctacttc catcctccat ggaagtatta ttaagtgtag 60 tttttatacc ttatcgctag gggaatccct ggcgcttgcg aacagcgggc ttcgcccgcg 120 cccgaagggc gtcttagaag gcgtgactat gcatatgagg gataacatgg aagttggtgg 180 ttggttgtag agagaaagca agactcataa cgggtggtat gacctatcaa tgattgacta 240 gctgagtcat gctgacttcg gattcgctgg gtatataagg cggtgtctgg agcggccaat 300 cacccatcca ccttaagtgg ttccgggtca ctctcagagc gctcatttgc cctttgacag 360 gcgaacaatc cgcacgttga ttcggctgcc agtgctgctg agctggtaag atggcattcc 420 caacacgcgg tgggttttcc gctattctaa atcttcccag cgatttaatc gtgggacaga 480 aaaatatgcc tgtattcgag tgtgtaactg ccggttacac ttctccggat tcaggcgaat 540 tcgtggcttc tagatttcca cccaaccacg aattgagaca agaaattaga aattttatcg 600 ggaacccaga atgggacgat ccagatttga catggataga tttccacatt caattggcga 660 aacacgccat agacgtggaa actaaactca atccaaattt acaaattttc tggcaaatgg 720 aaaaatctag tcagtcggga agatatcatc tccatttact gttcgtagaa ggatgtactt 780 ccaggcaaat tacatggata gtcaaaagaa tgagaaggga actttgcaac aaagctgcag 840 aaatgttgca catgttttgt cctgatttcc ccaaaagtca aatttgggga tcgctggtga 900 atatccaaaa cgctatgctt tcactgaata gaggatactc accgagaatt gggaaaccaa 960 tcccccaacc agtgaatcca tactcatttc taaaatacta catgttcaat tctgctaaaa 1020 tgagctttct gagaggggct actccaaaat tagctgaaaa attaccaatt ggtacaagat 1080 atgctagatt tgaagggtct cctgacctgg acgagggtcc cgaaattcca tcgcaggaat 1140 taactccagg ggacactcta cctgtatgct atgtaagtac tgaaactggt tgggggaacg 1200 gtggggggga gaccgtgatc aaaaccagta tcattgaaaa attatgcatg gaagcattaa 1260 gattatgcag agaaaatcac atttttacca tgaaagcatt taagctaaaa ttcccagaca 1320 aattcatgca gttcagttcg cgaaatcagg ggttagtgaa attagaagaa acaataaacc 1380 tgtattgtga gaccattatc aacgagcacg atgcgtggga aatagctaaa tcaatacatg 1440 gagatgttga cacagctgat ctagatgata atttagccat ccggttatgc agctaccaag 1500 gatatagtcc aaagtacgtt gctagactga tattgtgctg gctatccgga caagcaggga 1560 aaaaaaacgc attatatttc cacggaccag ccaatactgg taaaacaatg atggcagaaa 1620 gcatatgcaa aatggtacaa atatacggta acgtaaatca taacaacaaa aacttcccac 1680 tcaacgactg tcacaacaaa gcagtacttt ggtgggaaga atgtagcatg acggaagaac 1740 acgtagaatc tgcaaaatgt atcatggggg gatcctcagt gagaatagat aaaaaaaatc 1800 aagattcagt tctactatgt aaaactccaa tcgttattac ttctaataac gatatcactc 1860 aagtttcaag caggaatgcc atctcaacag ttcatgcagc tgcaataaga gcaagatgct 1920 taaaatttac atttaacaat tggctaactt caaattgggg actgataacc gttgatcaaa 1980 tgtatcaatt tttatgctgg ggagaattag agggcattcc gaccgtggat agtctcctga 2040 aagatcatcc cgaatttaac gggactttgc cttataacca acccaaaggt aaattttgtg 2100 ccgattgtgt taaccagttc agcactgcaa ctaacctgac cgtgtgccca gcctgctccg 2160 gatggacaag aaagccattc tccgaagaag aggaaccccc ctatactggt tctgaatccg 2220 ggctctttga gaaagccaac gaaggtaaga atgaggtccc agggatttat cccgtaaata 2280 gtggatccag gttaatccct gaggccccaa tcttacagaa accatcgacc tattgggaga 2340 cggagatccc cagcgaatcg agtggatttc cagacgagcc agacttcacc gcaagcgcaa 2400 aacttctcct gaaagtggac gatctccacc tagaaagcga tctgaaagtg gagcaggatc 2460 ctctggagtg caaaaagtgc tgtctggttc aataggccaa ctcgaaggta aaagcataac 2520 atttactgat gatctacctt cccttactga gttattttgc gacgaaacgc tgcccccatc 2580 cccgacatcc ccaatcaatc tccctgaacc ctctcgagtg gtacaatggg gggacttcaa 2640 agctcaatgg gtggaaggat acattggaaa gtggagggtt gcattttcta atttcatgtg 2700 ttggtataat gctaatatta cacagattca gacagtagaa ggtgatcctt gtactaatcc 2760 tgatgttttt cacgagttat atttccctat caagcaacac gccatggacg cacgcatgct 2820 gaaaatgaaa atcgaagaca aaatacaaaa gggcgacttc acacaagaca tacacctaga 2880 catgacatta acacaatgca ttcaaacagc acttagcgac gacccagcag ggatatggcc 2940 atgtgtagac aggttagcta attactgcaa tgttatattg gcttctatag gcacacaatg 3000 aaatacaaag ctccgaaagg ctacgtccct tcactgccca ccactgatga agaagcatat 3060 caccacacta gatggtggct ggatcatgtt gaaaattatg gaaaaaataa agctattggt 3120 agaggcaaag gaaaagctag gaaagagctc acaccacaac aaaaagctga acgcaaacgc 3180 ttttttatca cgcaggcaca aaaaaataaa aaacctaatt acggcatccc atcttcatcg 3240 cagcacaaag agtttttcaa aaatcatcag ggggcgcaag ggggaaaagc aaagcaaaaa 3300 accaaacata tagaaaatca agcaccacaa aggcaagagg acccagagga agggcccgca 3360 cctaaacaac ctagagtaga agaaaaccca tataatcaag aagaattaga agaaatgatg 3420 gcagatgaaa atgaacctga tcaatctggg atccctatgg aattaagcga cgggcctggg 3480 actgtgggag gaggtggtgg tgggggaatc gggcattcta ccggtaattg gaattgtgat 3540 actatatggg ctgaaaatac atgtaaaacc tatgcaagcc gccattgtgt ctgtcttatg 3600 cgtgacatgg atcaatataa agcaattggc aacgctaacg ggcaacacgg gttagacact 3660 gaaaaccaaa cacaatactt tggtttctct acaccatgga attatattga ctttaatcaa 3720 tacagcgtgc actttagtcc acgagattgg caacaactag ttaataatta ttcgagatgg 3780 cgcccacgcg ccgtacacgt gaaaatcttt aacctgcaag tcatccagaa aaccgtaaca 3840 gatagcggta cccagtactc taacgacttg acaggaacaa tccaaatatt tgcagatcag 3900 gaaggcagat atcctagatt gttataccct aaccaaacaa ctctaatggg tccatttcca 3960 tccaatatat actatctgcc tcaatacgca tacatgacaa gcatgtttaa ttcgggtgga 4020 ccaacagtat catcgtggtg gggatttcca acacgcgaaa gcgcatttta ctgtctagac 4080 gaaagcccct cgcaaatgtt aaggaccggt aatgagtggg aaaccacatt tatctttcca 4140 tcgagtacac aatggtgtag caataaaata tcaaccgtgt ccattacaca aagacaaaac 4200 ccattatacg atacatggaa cgtcaatggc agaggcgatg atgctaaaag aggcaatttc 4260 tgtacttgga gaagcccatg gtatccaggg ccttacattt acctaaccga tacatccgca 4320 gcatcacagc gtttagaaaa tcttgctaac gttgccgtag gcccagacgg catgcctcta 4380 gcaccaggaa tgccacaata cagatcagaa tccgataaag acgaatatct acatacattt 4440 tgggtaccta aaaaagttaa gatgaacgaa ggagatatac gtaacgcgca aatagatgta 4500 tccactgcaa ccaaagtaca agtagataca tcgacactat acaatacatg tcctagatca 4560 ggatacatgt ccactgtttc acagggaggg gcacccgcac ctattgtctg gtcagggtgt 4620 gtacctggca tgatatggga caataggccg gccacctact ttgatccgat atggcaacaa 4680 ttcccagaaa cagacgaaca attcaaaatt atctctcaat tggggggtat acctgttaaa 4740 gaatcacctg gtcacatttt tgtcaaagtc acgcctaagc caaccggggc tgcaaatggt 4800 ttgatcgatg aatattgtac ttttacgtgt actgtcgaaa tagaatggga attagaacca 4860 ctcaacactc acagatggaa catgagaagt atgatttcgt acgagaccac cgatgccaaa 4920 gctggaagac aaattgtcga tgaaaatggt caataccagg tcaatgttaa ctcggctgac 4980 attactcgtc tgtatatgac caagcgcgcg ccgcggacca actaatgtaa ctttcaaaaa 5040 atttcaataa agagtcttgc tttctctagt caacctactt ccatcctcca tggaagtatt 5100 attaagtgta gtttttatac cttatcgcta ggggaatccc tggcgcttgc gaacagcggg 5160 cttcgcccgc gcccgaaggg cgtcttagaa ggcgtgacta tgcatatgag ggataacatg 5220 gaagttggtg gttggttgta gagagaaagc aagactc 5257 //