ID   GQ404858; SV 1; circular; genomic DNA; STD; VRL; 1867 BP.
XX
AC   GQ404858;
XX
DT   15-MAR-2010 (Rel. 104, Created)
DT   15-MAR-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Cyclovirus TN18, complete genome.
XX
KW   .
XX
OS   Cyclovirus TN18
OC   Viruses; ssDNA viruses; Circoviridae; unclassified Circoviridae.
XX
RN   [1]
RP   1-1867
RX   DOI; 10.1128/JVI.02109-09.
RX   PUBMED; 20007276.
RA   Li L., Kapoor A., Slikas B., Bamidele O.S., Wang C., Shaukat S.,
RA   Masroor M.A., Wilson M.L., Ndjango J.B., Peeters M., Gross-Camp N.D.,
RA   Muller M.N., Hahn B.H., Wolfe N.D., Triki H., Bartkus J., Zaidi S.Z.,
RA   Delwart E.;
RT   "Multiple diverse circoviruses infect farm animals and are commonly found
RT   in human and chimpanzee feces";
RL   J. Virol. 84(4):1674-1682(2010).
XX
RN   [2]
RP   1-1867
RA   Li L., Kapoor A., Delwart E.;
RT   ;
RL   Submitted (23-JUL-2009) to the INSDC.
RL   Department of Laboratory Medicine, University of California, San Francisco,
RL   Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118,
RL   USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1867
FT                   /organism="Cyclovirus TN18"
FT                   /host="Homo sapiens"
FT                   /isolate="TN18"
FT                   /mol_type="genomic DNA"
FT                   /country="Tunisia"
FT                   /isolation_source="stool"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:742925"
FT   gene            55..1086
FT                   /gene="rep"
FT   CDS             join(55..236,408..1086)
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-association protein"
FT                   /db_xref="GOA:D4N3R4"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3R4"
FT                   /protein_id="ADD62479.1"
FT                   /translation="MAGSSSKQTNSTLRRFCWTLNNYTEEDVTTLQKDLAELCKFAIFG
FT                   RETCPNTGTKHLQGFCNLQRPKRFSSIRKLFKERAHIEKAKGSDLDNKTYCSKSGEVWM
FT                   HGEPCSQGARNDLQEVVSVIEGGERNIKAVALQFPTTYIKYFKGIEQYIRICHSSAERD
FT                   FATQVSFFWGPTGSGKSRRAYEEAKATGEPIYYKPRGEWWDGYCGHANVIIDDFYGWLK
FT                   YDELLKICDRYPYRVPVKGGYENFVTKRIWITSEKPLEQIYRFIGYDCSSIRRRLNTEL
FT                   YIGYQ"
FT   gene            complement(1093..1761)
FT                   /gene="cap"
FT   CDS             complement(1093..1761)
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3R5"
FT                   /protein_id="ADD62480.1"
FT                   /translation="MAFRRRVGRSRAPIRRKLPRRRVARRRRFRRSRRLRGNFTVLAKR
FT                   TQVVVIQGDEGGTVTIAPSLNDFTELAPLVPNFEGFRIWSVSCKIRPLFNVASDVGPVP
FT                   RYYVAPWHKPTPTTVDSNGVLSIDRSKSYNGTSGAFRRFVPALLSAVGYSGIAGNQYGK
FT                   IEWRPRVELNSNTQSLQHYCGVVHWSKDQLPGAGAPSRRQYEIELIAKITLYNQKYFIG
FT                   "
XX
SQ   Sequence 1867 BP; 565 A; 422 C; 421 G; 459 T; 0 other;
     ataccgccac ttcgtgttat ataaagccat gcgttacaag ctacgattca gacaatggct        60
     ggatcaagta gcaaacagac gaactctacg ctgcgtcgat tctgttggac actcaataac       120
     tacaccgagg aagatgtcac tactcttcag aaggatctcg ctgagctatg taaatttgct       180
     atatttggta gagagacatg tcctaacact ggaacaaaac atctgcaggg attttggtaa       240
     atatactcta ctcgtgcaat tcgagagaaa ctactggttg gtgttgaccg cccgatcccg       300
     ctacgaggtg gaccaccccc tggcgcgctt cgcgcgccgg ggccccgtcc acctctgcgc       360
     gggacgggct ccgtgtgtag tgatagtaat gtgtgttgtt ttttcagcaa tctgcagcga       420
     cccaagcgat tcagtagcat acgaaaacta tttaaagaac gagcgcacat tgaaaaagct       480
     aaaggaagtg atctcgataa taagacatac tgttctaaat ctggcgaggt atggatgcac       540
     ggagaacctt gttctcaagg agctagaaac gatctccaag aggttgtttc tgtcattgaa       600
     ggaggagaga gaaacattaa agcagtggcc cttcagttcc ccacaacgta catcaagtat       660
     tttaaaggaa ttgaacaata cattagaatc tgtcattcaa gtgcagaacg agattttgct       720
     acccaagtct cgttcttctg gggacctacc ggatctggga aatctagacg agcctatgaa       780
     gaagcgaaag cgactggaga gccaatctac tacaagccta gaggagaatg gtgggatgga       840
     tactgtggac acgctaatgt catcatcgac gacttctacg gatggcttaa atacgacgaa       900
     ttattaaaaa tatgcgaccg ttatccgtat agagtaccag taaagggggg atatgaaaat       960
     tttgtaacta aacgcatatg gattacaagc gaaaaacctt tagaacaaat atatcgattt      1020
     ataggttatg attgtagcag tataagaaga agactaaaca cagagttgta tattggatac      1080
     caataaactt tattaaccaa taaaatattt ttgattatat aaagttattt tagctataag      1140
     ttctatctca tattgtctcc tagacggcgc acccgcaccg gggagttgat ctttcgacca      1200
     gtgcacaact ccgcaataat gttgtaaact ttgcgtattc gaattaagtt ccacgcgcgg      1260
     cctccactca attttgccat attgatttcc cgcaatccca gaatagccaa cagcagaaag      1320
     aagagcagga acaaaccgcc ggaaggcccc agatgtgcca ttatacgatt tactcctatc      1380
     aatagataat acaccgttgc tatccacagt agttggagta ggcttatgcc atggtgccac      1440
     gtaataacga ggaacaggac caacgtcaga ggccacgtta aaaagcggtc taattttaca      1500
     tgacacgctc caaatacgga atccctcaaa gtttggaaca aggggcgcca actcagtaaa      1560
     atcattcaaa gaaggagcaa tagttacagt cccaccttcg tctccttgaa taactacaac      1620
     ctgagtacgt ttagccagca ccgtaaaatt tcctctcaat cgacgtgacc ttcggaatct      1680
     tcgccgccta gcaactcgac ggcgcggcaa ctttctcctt atcggagcgc gtgaccgacc      1740
     gactcgacgt ctgaaggcca tctctgacgt cacccgataa accggttata tcatgttgct      1800
     aggcgcggag tggggagcca atgagcgccc gatacgatgt tacggttacg aagtggcggg      1860
     taatact                                                                1867
//