ID   GQ404854; SV 1; circular; genomic DNA; STD; VRL; 1794 BP.
XX
AC   GQ404854;
XX
DT   15-MAR-2010 (Rel. 104, Created)
DT   15-MAR-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Cyclovirus NG12, complete genome.
XX
KW   .
XX
OS   Cyclovirus NG12
OC   Viruses; ssDNA viruses; Circoviridae; unclassified Circoviridae.
XX
RN   [1]
RP   1-1794
RX   DOI; 10.1128/JVI.02109-09.
RX   PUBMED; 20007276.
RA   Li L., Kapoor A., Slikas B., Bamidele O.S., Wang C., Shaukat S.,
RA   Masroor M.A., Wilson M.L., Ndjango J.B., Peeters M., Gross-Camp N.D.,
RA   Muller M.N., Hahn B.H., Wolfe N.D., Triki H., Bartkus J., Zaidi S.Z.,
RA   Delwart E.;
RT   "Multiple diverse circoviruses infect farm animals and are commonly found
RT   in human and chimpanzee feces";
RL   J. Virol. 84(4):1674-1682(2010).
XX
RN   [2]
RP   1-1794
RA   Li L., Kapoor A., Delwart E.;
RT   ;
RL   Submitted (23-JUL-2009) to the INSDC.
RL   Department of Laboratory Medicine, University of California, San Francisco,
RL   Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118,
RL   USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1794
FT                   /organism="Cyclovirus NG12"
FT                   /host="Homo sapiens"
FT                   /isolate="NG12"
FT                   /mol_type="genomic DNA"
FT                   /country="Nigeria"
FT                   /isolation_source="stool"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:742922"
FT   gene            181..1026
FT                   /gene="rep"
FT   CDS             181..1026
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-association protein"
FT                   /db_xref="GOA:D4N3Q6"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3Q6"
FT                   /protein_id="ADD62471.1"
FT                   /translation="MANSTVRRFVFTLNNYTEDQYQKCVEFISTKCKYGIVGKEVGEEN
FT                   GTPHLQGFCNLHKPMRFGTIKKSIDNAIHIEKANGSDIDNQKYCSKAGNFFETGTPSQQ
FT                   GRRTDLESLVAGIAAGANTTSKVATEFPAMYIKYHRGINEYLKLAFPIKPRTEKTWVYY
FT                   YWGPTGSGKSRRALEEAQSINADSIYYKPRGLWWDGYHQQENVIIDDFYGWIKYDELLK
FT                   ITDRYPYKVQVKGGFEEFTSTRIWITSEKDTCDLYKYEGYNPASFERRITCKINITYEK
FT                   "
FT   gene            complement(1034..1690)
FT                   /gene="cap"
FT   CDS             complement(1034..1690)
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3Q7"
FT                   /protein_id="ADD62472.1"
FT                   /translation="MAYRRRRLVRRRPVYRRRRMFKPVRRRRFHRRRTPVLYCKLTRTV
FT                   QAVVPPNTEYNLALHVALNDFAEHINLAPNFERVKVLRQTVRVFPQQNVSNTSTSRVGS
FT                   YCLLPYHKPTPTTPINFPTALSIDKAKIFRCTKVGRMSFVPATRLDADATPANQTIRTD
FT                   WRPEFEIGTTATLPILYTGMFCVENIGVAVGGSNANFTLVQDLYVRYKNQRSFIG"
XX
SQ   Sequence 1794 BP; 527 A; 430 C; 424 G; 413 T; 0 other;
     ataccggcga cttcgttgcg tgctattttt atactctccc tagtgcacgt tggtcgaacc        60
     gtgtggaact aaccgcccga ccccgcttcg aggtggacca ccccctcccg cgcctaacgg       120
     cgcggcgggg ccccgtccac ctctacgcgg ggcgggctcc gcgtgtcaga tcacactgag       180
     atggcaaaca gtacagtacg tagattcgtc tttacgttaa ataactatac tgaagatcaa       240
     taccaaaagt gcgttgagtt catttcaact aagtgcaagt atggcatcgt tggaaaggaa       300
     gtcggtgagg aaaatggaac ccctcatctg caaggatttt gcaacctaca caaaccaatg       360
     cgctttggaa ccatcaaaaa gtctatcgat aacgcaatcc atattgagaa ggcaaatgga       420
     tccgacattg ataaccaaaa atactgttcg aaagcaggca acttctttga aacgggcaca       480
     ccatctcaac aaggacgtcg tacagacctg gagtccctcg tggctggaat cgcggcaggg       540
     gccaacacca catccaaagt ggctactgaa ttcccagcca tgtacatcaa atatcatagg       600
     ggaatcaacg agtaccttaa actcgccttt cctatcaaac caagaacaga gaaaacttgg       660
     gtgtactatt actggggacc gactggttct ggcaaatcgc gaagagcgct tgaagaagct       720
     caatcaatta acgcagacag tatctactac aaaccgcgtg gtctctggtg ggacggttat       780
     catcagcaag aaaacgttat tattgacgac ttctacggat ggattaaata cgacgaactg       840
     ctaaagatca cagaccgcta cccatacaag gtgcaagtca aagggggatt cgaggaattc       900
     accagcaccc gcatatggat taccagcgaa aaggatacat gcgacttata caaatatgaa       960
     gggtataatc cagcgtcttt cgagcgccga ataacatgta aaatcaacat tacatatgaa      1020
     aaataaattt tattcaacca ataaatgacc gttgattctt atagcgtaca tacaaatcct      1080
     gtactagcgt aaaattagca ttactaccac ctacagctac tcctatattc tccacacaaa      1140
     acattcccgt atatagtata ggcaatgtcg cagtagtacc aatttcaaat tcagggcgcc      1200
     aatcggtacg tatagtttgg ttcgcaggcg tagcgtcagc atctagacgt gttgcaggga      1260
     cgaaggacat ccggccgacc ttggtgcaac gaaatatttt cgctttatca atcgaaagcg      1320
     ccgttgggaa gttgatcgga gtagtaggcg tcggtttgtg gtacgggagc aagcaataac      1380
     tgccaacgcg actcgttgaa gtattcgaca cattctgctg gggaaatact cgcactgtct      1440
     gacgcaatac cttaactctc tcaaaattag gtgccaggtt aatatgttcg gcaaaatcat      1500
     tcagagctac atgtagcgcc aaattatact cagtgttggg tggtacaaca gcctgaacgg      1560
     tacgcgtcaa tttacaatac aatacagggg tcctacgcct atgaaaacgt ctgcgacgaa      1620
     ccggtttgaa catgcgccgg cggcgataaa ccggtctgcg ccggaccaac cgcctgcgtc      1680
     ggtatgccat ggtcaactgg cgcgaccttg aaaagtgaaa ggcttttata gcggggtcgg      1740
     gcggttagag tgggggacgt tacgaagtgt gttacgaagt cgccgggtaa tact            1794
//