ID   GQ404851; SV 1; circular; genomic DNA; STD; VRL; 1935 BP.
XX
AC   GQ404851;
XX
DT   15-MAR-2010 (Rel. 104, Created)
DT   15-MAR-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Chimpanzee stool avian-like circovirus Chimp17, complete genome.
XX
KW   .
XX
OS   Chimpanzee stool avian-like circovirus Chimp17
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus.
XX
RN   [1]
RP   1-1935
RX   DOI; 10.1128/JVI.02109-09.
RX   PUBMED; 20007276.
RA   Li L., Kapoor A., Slikas B., Bamidele O.S., Wang C., Shaukat S.,
RA   Masroor M.A., Wilson M.L., Ndjango J.B., Peeters M., Gross-Camp N.D.,
RA   Muller M.N., Hahn B.H., Wolfe N.D., Triki H., Bartkus J., Zaidi S.Z.,
RA   Delwart E.;
RT   "Multiple diverse circoviruses infect farm animals and are commonly found
RT   in human and chimpanzee feces";
RL   J. Virol. 84(4):1674-1682(2010).
XX
RN   [2]
RP   1-1935
RA   Li L., Kapoor A., Delwart E.;
RT   ;
RL   Submitted (23-JUL-2009) to the INSDC.
RL   Department of Laboratory Medicine, University of California, San Francisco,
RL   Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118,
RL   USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1935
FT                   /organism="Chimpanzee stool avian-like circovirus Chimp17"
FT                   /host="chimpanzee"
FT                   /isolate="Chimp17"
FT                   /mol_type="genomic DNA"
FT                   /country="Rwanda"
FT                   /isolation_source="stool"
FT                   /collection_date="Sep-2002"
FT                   /db_xref="taxon:743290"
FT   gene            1..876
FT                   /gene="rep"
FT   CDS             1..876
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-association protein"
FT                   /db_xref="GOA:D4N3Q0"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3Q0"
FT                   /protein_id="ADD62465.1"
FT                   /translation="MAPIKRPAPCKRWCFTLNNFTDDEVQKVVSLQPDEVHYAIVGRET
FT                   GAQGTPHLQGYLHLKKKKRLTSMKEFLPRAHWEVARGSDEDNEAYCSKEGDVILTLGIP
FT                   AKGNRSDLSGAVAAVKAGRQMREIARDFSEVYVKYGRGLRELALLIGQKPRDFKTEVIV
FT                   LTGPSGVGKSRWANEQEGAKFYKMKGDWWDGYSNEDIVVIDDFYGWIPFCELLRLTDRY
FT                   PHKVPVKGAYVEFTSKKIIITSNTPPESWYNEEKCYVQALFRRINKWMIWNATGFEDAP
FT                   DCMKKYPINY"
FT   gene            complement(1039..1737)
FT                   /gene="cap"
FT   CDS             complement(1039..1737)
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:D4N3Q1"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3Q1"
FT                   /protein_id="ADD62466.1"
FT                   /translation="MNRIYLFRLRHSVKVTLQRDESGAFKYGTDAFTFTLEDVLKRDGG
FT                   QLKLPFEDYTIVLVKVEMRPLGESVTIWKGFGHTVPIQDARLTNFKKKAGLQDDPLANF
FT                   DGAKKWDQRWGFKRLLRPRPQLVSTDLSTANEVAPIWLNSQRSFWIPLQQTAQRIAPEK
FT                   INHYGLAFSYLQPSPEDEFYQAEITFYMKFRQFAWTTLNDPPTPNWQEQLPPNMELMNI
FT                   IDEDEGVDFQ"
XX
SQ   Sequence 1935 BP; 469 A; 495 C; 530 G; 441 T; 0 other;
     ctggctccaa ttaagcgccc tgcaccatgc aaacggtggt gctttaccct taacaacttt        60
     acggatgatg aagttcagaa ggtggtatcc ctgcagcctg atgaagtcca ttatgccatc       120
     gtcgggcgtg agacgggagc gcaggggacc ccacatctgc aagggtattt gcacttgaaa       180
     aagaagaagc gcctaacgag catgaaagag ttcctaccga gagctcattg ggaggtggcg       240
     agaggatccg atgaagacaa cgaggcctac tgctcaaaag aaggagacgt gatacttacc       300
     ctcggcatac cggcgaaggg aaaccggagc gacctctctg gagctgttgc cgctgtgaaa       360
     gccggaagac aaatgaggga aatcgcgcga gacttcagtg aagtatacgt caaatatggg       420
     cgtggcctaa gggagctggc gctcctgata ggccagaagc cgcgtgactt caagactgaa       480
     gttatcgtcc tgaccggccc ctcaggggtg gggaaaagca gatgggccaa tgagcaagaa       540
     ggagccaaat tctacaagat gaaaggtgat tggtgggatg gatattcaaa tgaagacata       600
     gtcgttattg acgacttcta tgggtggatc cctttctgtg agttgctccg cctaaccgac       660
     cggtacccgc ataaagtacc tgtcaagggg gcttatgtgg agtttacctc aaagaagata       720
     ataattacga gcaatacccc gccggaatca tggtacaacg aggaaaaatg ctacgttcaa       780
     gccctgttcc gccgcatcaa taagtggatg atctggaatg caactggatt cgaggatgca       840
     cccgactgca tgaaaaagta ccccatcaat tactgacccc gccggcatgg gcttcatttt       900
     catgcccaag ccggcggagg ccggagcggc ggtagccgcg taggccgatt ccggcgggca       960
     ttgccccgga gcgaccggcg acagccggga gcgaaggggc caaacactcg agacacaatt      1020
     gctgatcaat aaagtgcttt attgaaaatc tacaccttcg tcctcatcaa ttatgttcat      1080
     taactccata ttgggaggca gttgttcctg ccaattgggg gtggggggat cattgagtgt      1140
     tgtccaggcg aactgccgga acttcatgta gaaggtgatc tcggcctggt agaattcatc      1200
     ttccggtgat ggctgcaggt aactgaaggc aagtccgtaa tggttgatct tctcaggagc      1260
     aattctctga gctgtctgtt gcagggggat ccagaaggat ctctggctgt tcagccatat      1320
     aggggccacc tcattcgcag tggacaggtc agtactgact aactggggcc taggcctcag      1380
     tagtctctta aatccccatc tttgatccca ctttttagcc ccatcaaaat tagctagggg      1440
     atcatcctgt aggccagcct ttttcttaaa gttagttagc ctagcgtcct ggatagggac      1500
     agtatgtccg aaccccttcc atatagttac actctccccc aggggtctca tctccacctt      1560
     tacaaggact attgtatagt cctcgaatgg cagttttagc tgccccccgt ccctcttgag      1620
     gacgtcctct agtgtgaagg tgaaggcatc cgtgccgtac ttgaaagctc cagactcatc      1680
     tctctgtagg gttaccttca cggagtgtct cagcctgaat aggtagatcc tgttcagcct      1740
     gtgaccccgc ctatttgagg ggagtctcct cctccggtga cgtcgggggc ggcgtctcca      1800
     tgtcctccgg ctcctcctcc tgacccgccc ccaggcacgg gtggcgctga attgctgcaa      1860
     aagagagata agccgctggt tccaagttgc cgtacagtat tactggcaac ttggaaccgc      1920
     ggaaccccct ccgaa                                                       1935
//