ID   GQ404850; SV 1; circular; genomic DNA; STD; VRL; 1747 BP.
XX
AC   GQ404850;
XX
DT   15-MAR-2010 (Rel. 104, Created)
DT   15-MAR-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Cyclovirus Chimp12, complete genome.
XX
KW   .
XX
OS   Cyclovirus Chimp12
OC   Viruses; ssDNA viruses; Circoviridae; unclassified Circoviridae.
XX
RN   [1]
RP   1-1747
RX   DOI; 10.1128/JVI.02109-09.
RX   PUBMED; 20007276.
RA   Li L., Kapoor A., Slikas B., Bamidele O.S., Wang C., Shaukat S.,
RA   Masroor M.A., Wilson M.L., Ndjango J.B., Peeters M., Gross-Camp N.D.,
RA   Muller M.N., Hahn B.H., Wolfe N.D., Triki H., Bartkus J., Zaidi S.Z.,
RA   Delwart E.;
RT   "Multiple diverse circoviruses infect farm animals and are commonly found
RT   in human and chimpanzee feces";
RL   J. Virol. 84(4):1674-1682(2010).
XX
RN   [2]
RP   1-1747
RA   Li L., Kapoor A., Delwart E.;
RT   ;
RL   Submitted (23-JUL-2009) to the INSDC.
RL   Department of Laboratory Medicine, University of California, San Francisco,
RL   Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118,
RL   USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1747
FT                   /organism="Cyclovirus Chimp12"
FT                   /host="chimpanzee"
FT                   /isolate="Chimp12"
FT                   /mol_type="genomic DNA"
FT                   /isolation_source="stool in Africa"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:742921"
FT   gene            23..865
FT                   /gene="rep"
FT   CDS             23..865
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-association protein"
FT                   /db_xref="GOA:D4N3P8"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3P8"
FT                   /protein_id="ADD62463.1"
FT                   /translation="MSNRTVRKFCFTWNNYEFDAYAKCETFLNNFAKYGSVGEELCPST
FT                   GTPHLQGYVNLIKPTRFSTIKKHLHNAIHIEKANGSDEQNQTYCRKSGIFFEKGEPIKQ
FT                   GQRTDLQLLVKDTMEPSNTLKDIATKHPIAYIRYFRGIQELRRMVLPVPPRNYPTEVRY
FT                   YWGPPGSGKSRRALQEATEISTNGIYYKPRGQWWDGYVQQSCVIIDDFYGWIKYDEILK
FT                   ICDRYPYKVQIKGGYEEFTSTHIWFTSNVDTDLLYKFNNYINTAFERRITVKEHITLS"
FT   gene            complement(852..1514)
FT                   /gene="cap"
FT   CDS             complement(852..1514)
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3P9"
FT                   /protein_id="ADD62464.1"
FT                   /translation="MAFKHCFRRRRRMRKPVRRFRRRCRMRRRVLRSKPGNMLTKLTKI
FT                   TTLSVENNINATWSCSFKMGDFTEYGRLAPNFETVKLNKVVVRVQPLQNVANNSTSSVP
FT                   AYVVVPWHYNIALPKDFASYLSIDKHKLRTQTVGTSMSFVPNIVTVGVANEGANPTGRN
FT                   ITWKPTLECLGVDINIPRVYCGAIRFQGQPDMEGRKTAFNIITDVYCTFRNQNTMKV"
XX
SQ   Sequence 1747 BP; 570 A; 406 C; 351 G; 420 T; 0 other;
     ataccagcca ctttgttgcg cgatgtcaaa ccgcacagta agaaagtttt gcttcacatg        60
     gaataactac gaattcgacg cgtacgcaaa gtgtgagaca tttttaaata acttcgctaa       120
     atatggaagc gtgggagaag aactctgtcc atcaacaggg acgcctcacc tacaggggta       180
     tgttaacctc attaaaccca cacgcttcag taccatcaag aagcatctcc ataacgcaat       240
     ccatattgag aaggcaaacg gatcagacga acaaaaccaa acatactgta gaaaatcagg       300
     catatttttt gaaaagggag agcctatcaa gcaaggacaa aggacggacc tacagttgtt       360
     ggttaaagac acaatggagc ccagcaatac ccttaaagat attgccacca aacaccctat       420
     tgcatatatc cggtacttca gaggtatcca agaactacgg agaatggtat tacctgtacc       480
     tccaagaaac tatcccacgg aagttcgcta ctactgggga cctcctggca gcggaaaaag       540
     tcgcagagct ctacaagaag caaccgaaat atctaccaac gggatatatt ataagccaag       600
     gggacaatgg tgggacggtt acgttcagca atcctgcgtc atcatagacg acttctacgg       660
     atggattaaa tatgatgaaa tacttaaaat ttgtgacaga tacccctaca aagtacaaat       720
     aaaaggagga tacgaggaat tcacaagtac acacatatgg tttacatcaa acgttgacac       780
     agatttatta tataaattca acaattacat aaatactgct tttgaacgac gaattactgt       840
     aaaagaacat attacacttt catagtattt tgatttctaa atgtacaata aacatcagtt       900
     ataatattaa aagctgtctt tcttccttcc atatctggct gaccttgaaa acgtattgct       960
     ccacaatata ctctaggtat attaatatct actcccaaac actccaaagt cggcttccaa      1020
     gtaatattac gtcccgttgg gttcgcgcct tcattagcaa ctcctaccgt tacgatgttc      1080
     ggtacaaatg acatagacgt acctacagtt tgcgtcctca atttatgctt atcaatgctc      1140
     aaataacttg caaaatcttt aggcaacgcg atattataat gccaaggaac aacaacatac      1200
     gcgggaacag atgaagttga attatttgca acattttgta acggttgaac acgaacaaca      1260
     actttattca atttaacagt ttcaaaatta ggagctaaac gtccatactc ggtaaaatcc      1320
     cccatcttga aggaacatga ccacgtagca ttaatattat tttcgacaga caacgtagta      1380
     attttagtaa gctttgtaag catattccca ggtttactcc taagaacacg gcgacgcatt      1440
     ctacagcgcc tacgaaatct ccgaaccggt ttacgcatgc ggcggcgacg cctaaaacaa      1500
     tgtttgaatg ccatgactca ctgttgctaa ctgatgttgg gggggaggct agcgcggcct      1560
     accggccgct tacataccgc gctgcccccc cacccccacg ggacccagga acggcgagct      1620
     accgctcgcc gaaaggaggg ggaaaggacg gcggcctacc ggccgccgcg tacacgctca      1680
     gacacgctca aggccaaaag tgaaaggcgg ttacgaagtg gcggttacga agtggctggg      1740
     taatact                                                                1747
//