ID   GQ404849; SV 1; circular; genomic DNA; STD; VRL; 1750 BP.
XX
AC   GQ404849;
XX
DT   15-MAR-2010 (Rel. 104, Created)
DT   15-MAR-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Cyclovirus Chimp11, complete genome.
XX
KW   .
XX
OS   Cyclovirus Chimp11
OC   Viruses; ssDNA viruses; Circoviridae; unclassified Circoviridae.
XX
RN   [1]
RP   1-1750
RX   DOI; 10.1128/JVI.02109-09.
RX   PUBMED; 20007276.
RA   Li L., Kapoor A., Slikas B., Bamidele O.S., Wang C., Shaukat S.,
RA   Masroor M.A., Wilson M.L., Ndjango J.B., Peeters M., Gross-Camp N.D.,
RA   Muller M.N., Hahn B.H., Wolfe N.D., Triki H., Bartkus J., Zaidi S.Z.,
RA   Delwart E.;
RT   "Multiple diverse circoviruses infect farm animals and are commonly found
RT   in human and chimpanzee feces";
RL   J. Virol. 84(4):1674-1682(2010).
XX
RN   [2]
RP   1-1750
RA   Li L., Kapoor A., Delwart E.;
RT   ;
RL   Submitted (23-JUL-2009) to the INSDC.
RL   Department of Laboratory Medicine, University of California, San Francisco,
RL   Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118,
RL   USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1750
FT                   /organism="Cyclovirus Chimp11"
FT                   /host="chimpanzee"
FT                   /isolate="Chimp11"
FT                   /mol_type="genomic DNA"
FT                   /isolation_source="stool in Africa"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:742920"
FT   gene            23..865
FT                   /gene="rep"
FT   CDS             23..865
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-association protein"
FT                   /db_xref="GOA:D4N3P6"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3P6"
FT                   /protein_id="ADD62461.1"
FT                   /translation="MSNRTVRKFCFTWNNYEFDAYAKCETFLNNFAKYGIVGEELCPST
FT                   GTPHLQGYVNLIKPTRFSTIKKHLHNAIHIEKANGSDEQNQTYCRKSGIFFEKGEPIKQ
FT                   GQRTDLQLLVKDTMEPSNTLKDIATKHPIAYIRYFRGIQELRRMVLPVPPRNYPTEVRY
FT                   YWGPPGSGKSRRALQEATEISTNGIYYKPRGQWWDGYEQQSCVIIDDFYGWIKYDEILK
FT                   ICDRYPYKVQIKGGYEEFTSTHIWFTSNVDTDLLYKFNNYINTAFERRITIKEHITLS"
FT   gene            complement(852..1514)
FT                   /gene="cap"
FT   CDS             complement(852..1514)
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3P7"
FT                   /protein_id="ADD62462.1"
FT                   /translation="MAFKRYFRRRRRVRKPVRRFRRRYRMRRRVLRSKPGNMLTKLTKI
FT                   TTLSVENNINATWSCSFKMGDFTEYGRLAPNFETVKLNKVVVRVQPLQNVANNSTSSVP
FT                   AYVVVPWHYNIALPKDFASYLRIDKHKLRAQTVGTSMSFVPNIVTVGVANEGANPTGRN
FT                   ITWKPTLECLGVDINIPRVYCGAICFQGQPDMEGRKTAFNIITDVYCTFRNQNTMKV"
XX
SQ   Sequence 1750 BP; 572 A; 410 C; 351 G; 417 T; 0 other;
     ataccagcca ctttgttgcg cgatgtcaaa ccgcacagta agaaagtttt gcttcacttg        60
     gaataactac gaattcgacg cgtacgcaaa gtgtgagaca tttttaaata acttcgctaa       120
     atatggaatc gtgggagaag aactctgtcc atcaacaggg acgcctcacc tacaggggta       180
     tgttaacctc attaaaccca cacgcttcag taccatcaag aagcatctcc ataacgcaat       240
     ccatattgag aaggcaaacg gatcagacga acaaaaccaa acatactgta gaaaatcagg       300
     catatttttt gaaaagggag agcctatcaa gcaaggacaa aggacggacc tacagctgct       360
     ggttaaagac acaatggagc ccagcaatac ccttaaagat attgccacca aacaccctat       420
     tgcatatatc cggtacttca gaggtatcca agaactacgg agaatggtat tacctgtacc       480
     tccaagaaac tatcccacgg aagttcgcta ctactgggga cctcctggca gcggaaaaag       540
     tcgcagagct ctacaagaag caaccgaaat atctaccaac gggatatatt ataagccaag       600
     gggacaatgg tgggacggct acgaacagca atcctgcgtc atcatagacg acttctacgg       660
     atggattaaa tatgatgaaa tacttaaaat ttgcgacaga tacccctaca aagtacaaat       720
     aaaaggagga tacgaggaat tcacaagtac acacatatgg tttacatcaa acgttgacac       780
     agatttatta tataaattca acaattacat aaatactgct tttgaacgac gaattactat       840
     aaaagaacat attacacttt catagtattt tgatttctaa atgtacaata aacatcagtt       900
     ataatattga aagctgtctt tcttccttcc atatctggct gaccttgaaa acatattgct       960
     ccacaatata ctctaggtat attaatatct actcccaaac actccaaagt cggcttccaa      1020
     gtaatattac gtcccgttgg attcgcgcct tcattagcaa ctcctaccgt tacgatgttc      1080
     ggtacaaatg acatagatgt acctacagtt tgcgccctca atttatgctt atcaatgcgc      1140
     aaataacttg caaaatcttt aggcaacgcg atattataat gccaaggaac aacaacatac      1200
     gcgggaacag atgaggttga attatttgca acattttgta aaggttgaac acgaacaaca      1260
     actttattca atttaacggt ttcaaaatta ggagctaaac gtccatactc ggtaaaatct      1320
     cccatcttga aggaacatga ccacgtagca ttaatattat tttcgacaga caacgtagta      1380
     attttagtaa gctttgtaag catattccca ggtttactcc taagaacacg gcgacgcatt      1440
     ctatagcgcc tacgaaatct ccgaaccggt ttacgcacgc ggcggcgacg cctaaaataa      1500
     cgtttgaatg ccatgactca ctgttgctaa ctgatgttgg gggggaggct agcgcggcct      1560
     accggccgct tacataccgc gcctgccccc cccatccccc acgggaccca ggaacggcga      1620
     gctaccgctc gccgaaagga gggggaaagg acggcggcct accggccgcc gcgtacacgc      1680
     tcagacacgc tcaaggccaa aagtgaaagg cggttacgaa gtggcggtta cgaagtggct      1740
     gggtaatact                                                             1750
//