ID   GQ404845; SV 1; circular; genomic DNA; STD; VRL; 1780 BP.
XX
AC   GQ404845;
XX
DT   15-MAR-2010 (Rel. 104, Created)
DT   15-MAR-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Cyclovirus PK5034, complete genome.
XX
KW   .
XX
OS   Cyclovirus PK5034
OC   Viruses; ssDNA viruses; Circoviridae; unclassified Circoviridae.
XX
RN   [1]
RP   1-1780
RX   DOI; 10.1128/JVI.02109-09.
RX   PUBMED; 20007276.
RA   Li L., Kapoor A., Slikas B., Bamidele O.S., Wang C., Shaukat S.,
RA   Masroor M.A., Wilson M.L., Ndjango J.B., Peeters M., Gross-Camp N.D.,
RA   Muller M.N., Hahn B.H., Wolfe N.D., Triki H., Bartkus J., Zaidi S.Z.,
RA   Delwart E.;
RT   "Multiple diverse circoviruses infect farm animals and are commonly found
RT   in human and chimpanzee feces";
RL   J. Virol. 84(4):1674-1682(2010).
XX
RN   [2]
RP   1-1780
RA   Li L., Kapoor A., Delwart E.;
RT   ;
RL   Submitted (23-JUL-2009) to the INSDC.
RL   Department of Laboratory Medicine, University of California, San Francisco,
RL   Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118,
RL   USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1780
FT                   /organism="Cyclovirus PK5034"
FT                   /host="Homo sapiens"
FT                   /isolate="PK5034"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan"
FT                   /isolation_source="stool"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:742916"
FT   gene            204..1037
FT                   /gene="rep"
FT   CDS             204..1037
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replication-association protein"
FT                   /db_xref="GOA:D4N3N8"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3N8"
FT                   /protein_id="ADD62453.1"
FT                   /translation="MNSTVRRFCFTWNNYTVADTLTVKDYFVKYCKYGIAGEELAPETG
FT                   TPHLQGFCNLRKPQRFSAIKKHLSDRIHIEKANGSDEQNQSYCKKAGHWFEQGVPVKQG
FT                   DRSDLKSVVSTIADGANTAQAIAEKHPVEFIKYYKGISEYLRLLAPIAPRKFKTYVYYY
FT                   WGPPGSGKSRRALEEAESLDPDSIYYKPRGLWWDGYRQQQSVIIDDFYGWIKYDELLKI
FT                   TDRYPYKVQVKGGFEEFTSTRIWFTSNVDTDRLYRFDGFTPEAFERRITAKIHIT"
FT   gene            complement(1034..1690)
FT                   /gene="cap"
FT   CDS             complement(1034..1690)
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:D4N3N9"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="UniProtKB/TrEMBL:D4N3N9"
FT                   /protein_id="ADD62454.1"
FT                   /translation="MAYRRRRVYRRKPVRRLGRRRRVYRRRHRRSAKGKLLAKFTKVTL
FT                   LTVEHKSTSVWPVSFKCNDFKEFERLKTSFEYIKFYKVVATVYPLQNVSNNSTSMCPCY
FT                   AMAPWHTSIAMPKDFEAYMSLDRAKMYRQTQVGRQVYVPSTQLVTDWKSNETSYGQVQW
FT                   RPELKCNLIGTQEHPNIQCGAVAFQGNLGATDTKSYFSIKLDVYCKLKGQNTMIV"
XX
SQ   Sequence 1780 BP; 477 A; 457 C; 399 G; 447 T; 0 other;
     ataccgtcca cttcgttgcg ccttgttgct gggcgctccc acttatatac tctactcgtg        60
     caattcgaga gaaactaccg cttggtgttg tcgcccgatc ccgctacgcg gcggcacctc       120
     gcaaacgctg cgctccttcg tcgcgcagcc tactcggcac ccccgcttcg cgggacgggc       180
     tctgtgcctc gtagtcgtta gccatgaaca gtactgtgcg tagattctgt ttcacgtgga       240
     ataactacac ggttgcagac actcttactg tgaaagacta ctttgtgaaa tactgcaaat       300
     atggcatcgc tggagaggaa ctcgctccgg aaaccggaac tcctcatctt cagggattct       360
     gtaatctacg caagccccag cgcttcagtg ccatcaagaa gcatctcagt gacagaatcc       420
     atattgagaa ggcaaatgga tccgacgaac aaaaccaatc ttactgtaaa aaagcaggcc       480
     attggtttga acagggtgta ccagttaaac aaggggacag aagcgacctt aaatctgtcg       540
     tttcaaccat tgcggatggg gccaacaccg cacaagccat tgctgaaaaa caccccgttg       600
     agtttattaa gtactataaa gggatcagcg agtatctacg actacttgcc ccaattgcgc       660
     cgcgtaaatt caaaacctac gtatactact attggggccc accaggatct ggcaaaagcc       720
     ggcgcgctct tgaagaagca gaatcgctcg acccagattc aatatactac aagccaagag       780
     ggctatggtg ggacggctac cgacagcagc agtctgttat cattgatgac ttctacggtt       840
     ggatcaaata cgacgaactc ctgaaaataa cggaccgcta cccatacaag gtgcaagtga       900
     aaggcggctt cgaggaattc acctctaccc gcatctggtt cacaagcaac gtcgacacgg       960
     accggttata ccggtttgac gggttcaccc cagaggcatt cgaaagaaga attacagcga      1020
     aaatacatat tacttaaaca atcattgtat tttgaccttt gagtttacaa tatacatcaa      1080
     gcttaatact aaaatatgat tttgtatctg tagctcccaa attcccttga aacgcaaccg      1140
     ctccacattg aatgttagga tgttcttgag ttccgataag attacatttc aattccggcc      1200
     gccattggac ttgtccataa gatgtctcat tgcttttcca atcggttact agctgggtac      1260
     tcggtacata tacctgcctt cctacttgcg tctgacggta catttttgct cggtccaaag      1320
     acatatacgc ctcaaaatct ttaggcatgg cgattgatgt gtgccacggc gccattgcgt      1380
     agcacggaca catcgaggtt gaattattag atacattttg cagagggtat acagtagcaa      1440
     caaccttata gaacttgata tactcaaacg acgttttcaa tctctcaaac tctttaaaat      1500
     cattacattt aaatgaaaca ggccagacag acgtagattt atgctcaaca gtaagaagcg      1560
     tgaccttcgt aaattttgcg agtaactttc ccttcgcgct acgcctatgt ctcctgcggt      1620
     agactcgcct ccgccggcca agccgtcgaa ccggtttgcg ccggtacacc cttctccttc      1680
     tgtacgccat gcctgactgc ccgtatatgg agtgaaaggc cgccgcgcgg gcgacatggt      1740
     ggggggttac gaagttgtta cgaagtggac gggtaatact                            1780
//