ID GQ368252; SV 1; linear; genomic DNA; STD; VRL; 4684 BP. XX AC GQ368252; XX DT 16-AUG-2009 (Rel. 101, Created) DT 28-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Avian adeno-associated virus isolate YZ-1, complete genome. XX KW . XX OS Avian adeno-associated virus OC Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Dependovirus. XX RN [1] RP 1-4684 RX PUBMED; 17894232. RA Wang A.P., Sun H.C., Wang J.Y., Wang Y.J., Yuan W.F.; RT "Construction and identification of recombinant avian adeno-associated RT virus expressing GFP reporter gene"; RL Ping Tu Hsueh Pao 23(4):292-297(2007). XX RN [2] RP 1-4684 RX DOI; 10.1007/s00705-010-0822-x. RX PUBMED; 20890715. RA Wang J., Zhu L., Zhu J., Sun H., Zhu G.; RT "Molecular characterization and phylogenetic analysis of an avian RT adeno-associated virus originating from a chicken in China"; RL Arch. Virol. 156(1):71-77(2011). XX RN [3] RP 1-4684 RA Wang J., Zhu J., Zhu L., Sun H., Zhu G.; RT ; RL Submitted (07-JUL-2009) to the INSDC. RL College of Veterinary Medicine, Yangzhou University, Wenhui East Road 12, RL Yangzhou, Jiangsu 225009, P.R. China XX FH Key Location/Qualifiers FH FT source 1..4684 FT /organism="Avian adeno-associated virus" FT /host="chicken" FT /isolate="YZ-1" FT /mol_type="genomic DNA" FT /country="China" FT /collection_date="Sep-2005" FT /db_xref="taxon:341671" FT gene 243..2237 FT /gene="rep" FT CDS 243..2237 FT /codon_start=1 FT /gene="rep" FT /product="Rep78" FT /note="nonstructural replication protein" FT /db_xref="GOA:C7FFR9" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR014835" FT /db_xref="UniProtKB/TrEMBL:C7FFR9" FT /protein_id="ACU30841.1" FT /translation="MRSYYEVIVQLPNDVESQVPGISDSFVNWITSREWTLPEDADWDL FT DQVDQVQLTLGDKIQREIRNHWGTMAKEPDFHYFIQLEQGEVFFHLHVLLETCSVKPMV FT LGRYIRHIQQKIVSKVYCGHEPAMEGWMRVTKTKNFGGANKVRAESYIPAYLIPKQQPE FT VQWAWTNVPEYIKACLHRELRASLARLHFEEAGLSQSKENLARTADGAPVIATRVSKRY FT MELVDWLVEKGITTEKEWLLENRESFRSFQASSNSARQIKTALQGAIQEMLLTKTAEDY FT LVGKDPVSDDEIRQNRIYKILELNHYDPAYVGSILVGWCQKKWGKRNTLWLFGPATTGK FT TNIAEAIAHAVPFYGCVNWTNENFPFNDCVEKMIIWWEEGKMTAKVVETAKAILGGSRV FT RVDQKCKASVPIEPTSVIITSNTNMCYVIDGNTTTFEHKQPLEDRMFKLELLTRLPDDF FT GKVTKQEVRQFFRWSQDHLTPVIPEFLVRKAESRKRPAPSGEGYISPTKKPALAEQQQA FT SESAEPVPTRYRIKCSKHCGMDKMLFPCQICESMNRNINICAIHKTTECKECFPEYGDK FT KDTVPELPPCTEHNVSRCYQCHSGELYRVTSDSDEKPAPASDEGTEPSYAPCTIHHLMG FT KSRGLVSCAACRLKNSTLHDDLDDGDLEQ" FT gene 2255..4471 FT /gene="VP1" FT CDS 2255..4471 FT /codon_start=1 FT /gene="VP1" FT /product="VP1" FT /note="structural protein" FT /db_xref="GOA:C7FFS0" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:C7FFS0" FT /protein_id="ACU30842.1" FT /translation="MSLISDAIPDWLERLVRKGVNAAADFYHLESGPPAPKANQQTQES FT PEKDDSRGLVFPGYKYLGPFNGLDKGEPVNEADAAALEHDKAYDLELKDGHNPYFEYNE FT ADRRFQERLKDDTSFGGNLGKAIFQAKKRVLEPFGLIEQPDNTAGTGEKRPERVDDFFP FT KKKKAKTEQGKTPAQTGEDPGEGTSSNAGSSAPSSVGSSVMAEGGGGPVGDAGQGADGV FT GNSSGNWHCDSQWLDNGVVTRTTRTWVLPSYNNHLYKRIQGPGGTDNNNKYFGFSTPWG FT YFDYNRFHCHFSPRDWQRLINNNWGIRPKAMRFRLFNIQVKEVTVQDSNTTIANNLTST FT VQVFADKDYQLPYVLGSATEGTFPPFPADIYTIPQYGYCTLNYNNEAVDRSAFYCLDYF FT PSDMLRTGNNFEFTYTFEDVPFHSMFAHNQTLDRLMNPLVDQYLWAFSSVSQPSSGQRR FT LNYSRGTKNNMAVQYKNWLPGPFFRDQQIYTGASNITQNNVFNVWDKGKQWVIDNRTNL FT MQPGPAAATTFSGEPDRQAMQNTLAFSRTVYDQTTSTADRNQLLITNEDEIRPTNSVGI FT DVWGVVPNNQQSNVSPGNRTGVNNQGALPGMVWQNRDIYLQGPIWAKVPDTDNHFHPSP FT LIGGFGCKHPPPQIFIKNTPVPANPPETFQTAKVASFINQYSTGQCTVEIFWELKKETS FT KRWNPEIQFTSNFGNAADIQFSVSDTGLYSEPRPIGTRYLTKPL" XX SQ Sequence 4684 BP; 1211 A; 1298 C; 1227 G; 948 T; 0 other; tggccagttt ccaaaacagg ctcgctcgct cactcggggc gcgacgccaa aggcgtcgca 60 gcgacccctt cggggtcgcg ccccgagtga gcgagcgagc ctgttttgga aactggccag 120 cactccggtg aggtaatgcc gtcacgtggt accgcacgtg aataggaaat ctcgcgagaa 180 cgtaaacaaa tataagacga cgccacgccg cgccgcgtca tacgcgcgcg cgcaccggcg 240 agatgaggtc gtactacgag gtcatcgttc agctgcccaa cgacgtcgag agtcaggtac 300 ctggaatctc ggattcgttc gtcaactgga ttacgtcgcg agaatggacg ttgcctgagg 360 acgccgattg ggatttggac caggtcgatc aagttcaact gacgctcggc gacaaaatcc 420 aacgggagat tcgaaatcat tgggggacaa tggccaaaga accggacttt cactatttta 480 tccaactcga acaaggtgag gtgttctttc atttgcacgt cctgctggaa acgtgttccg 540 tcaagccgat ggtgctcggg cgatacattc ggcatattca gcaaaagatc gtgagtaaag 600 tctactgcgg acacgaaccc gcgatggaag gatggatgcg tgtgaccaaa accaagaatt 660 ttgggggcgc gaacaaggtt cgggccgaat catatattcc cgcctacctg attccgaaac 720 agcaaccgga agtgcagtgg gcgtggacta acgtgcccga gtatataaaa gcgtgcctgc 780 accgagaact gcgtgccagt ctcgcgcgac ttcacttcga ggaggcgggg ctctcgcagt 840 ccaaggaaaa tctcgcgaga actgcagacg gcgctcccgt gatcgcgacc cgcgtcagca 900 aacgctacat ggagctcgtg gattggctcg tggagaaggg gatcaccacc gagaaggaat 960 ggctgctgga aaacagagaa agctttcgga gctttcaagc ctcgagcaac tcggcgcgtc 1020 agatcaagac ggctctacaa ggcgccattc aggagatgct tctgaccaag acggcggagg 1080 actacctcgt cggaaaggat cccgtctcgg acgacgagat tcgtcagaat cgcatctaca 1140 agatcctgga actgaaccac tacgacccgg cgtatgtggg gagtattttg gtcgggtggt 1200 gccagaagaa atggggcaag cgaaacacgc tgtggctgtt cggacctgcg accaccggca 1260 agaccaacat cgcggaggct attgcccatg ctgtgccgtt ctatggatgc gttaactgga 1320 ccaacgagaa ctttccgttc aacgactgcg tcgaaaagat gattatctgg tgggaggagg 1380 gcaaaatgac cgccaaagtg gtggaaacgg ccaaggcgat tctgggggga tctcgggtga 1440 gagtggatca aaaatgcaaa gcttcggttc ctattgaacc gacgtcggtc attattacca 1500 gtaacaccaa catgtgttat gtcatcgacg ggaacacgac tacgttcgag cataagcagc 1560 cgttggagga caggatgttt aagctcgagc tgttgactcg tttacccgat gactttggta 1620 aggtgaccaa acaggaggtg cgtcaattct tcaggtggtc ccaggatcac ctgacgcccg 1680 tgatcccaga attcctggtg cggaaggcgg agtctcgcaa aagacccgcc ccttccgggg 1740 aaggctatat aagcccgacc aagaagcccg cgctcgcaga gcagcagcag gcgtcggaga 1800 gcgcggagcc ggttcccacc aggtatcgta tcaaatgctc gaaacattgc gggatggata 1860 aaatgttgtt tccttgccaa atttgtgaat cgatgaacag aaatattaat atatgtgcga 1920 ttcataaaac aacggaatgt aaagaatgtt ttccggaata cggggataaa aaggacactg 1980 taccagaact acccccctgt acagaacata acgtgtctcg ttgttatcaa tgtcattcgg 2040 gcgaattgta tcgcgtgact tcggactctg acgagaaacc tgcccccgcg agtgatgaag 2100 gcactgagcc atcctatgct ccctgcacga ttcaccactt gatgggcaag agtcgcgggt 2160 tagtgtcgtg tgctgcatgt cggttaaaaa atagtacatt gcatgatgac ttggacgatg 2220 gcgatctcga acaataaatg attgaaatat agccatgtct cttatttctg atgcgattcc 2280 agattggttg gagcggttgg ttcgcaaggg agtcaacgct gcggctgact tttatcattt 2340 ggagagcggt cctcctgctc ctaaggccaa tcagcaaact caagaatctc ctgaaaagga 2400 cgattctaga ggtctcgtgt tcccgggtta caagtatcta ggccctttta acggtctaga 2460 taaaggagaa cccgtcaacg aggcagacgc tgccgcctta gagcacgaca aggcttacga 2520 cctcgaactc aaggacgggc acaacccgta ctttgagtac aacgaggccg atagacgttt 2580 ccaggaacgt ctcaaagacg atacctcttt cggggggaat ctcggtaaag ctatctttca 2640 ggccaaaaag agggtcctcg agccctttgg tctgattgaa caacccgaca acacggccgg 2700 gaccggggag aagcgtcccg aacgcgtcga cgactttttc ccgaaaaaga agaaggccaa 2760 gaccgagcaa ggcaaaaccc ctgctcaaac gggcgaagac cccggagaag gaacctcttc 2820 caacgctgga tcaagcgccc cctctagtgt gggatcatct gtcatggctg aaggaggtgg 2880 cggcccagtg ggcgatgcag gccagggtgc cgatggagtg ggcaattcct cgggaaattg 2940 gcattgcgat tcccaatggc tggacaacgg agtcgtcact cgaaccaccc gaacctgggt 3000 cttgcccagc tacaacaacc acctgtacaa gcggatccaa ggaccgggag gaaccgacaa 3060 caacaacaaa tactttggat tcagcacccc ctgggggtac tttgactaca accgattcca 3120 ctgccacttt tctccgcgag actggcaaag actcatcaac aacaactggg gcatccgacc 3180 caaagcgatg cgctttagac tctttaacat ccaggtcaaa gaagtcacgg tccaagactc 3240 caacaccacc attgccaaca acctcaccag cacggtccaa gtctttgcgg acaaggacta 3300 ccagctgccg tacgtcctcg gatcggctac cgaaggcacc ttcccgccgt tcccagcgga 3360 tatctacacg atcccgcagt atggttactg cacgctaaac tacaacaacg aggcggtgga 3420 tcgttcggcc ttctactgtc tggactactt tccctcagac atgctgcgga caggaaataa 3480 ctttgaattc acttacacgt tcgaggacgt tcctttccat agcatgtttg cccacaacca 3540 gacgctagac cggctgatga atcccctcgt cgatcagtac ctctgggcct tcagctccgt 3600 cagccaaccc agctcgggtc agagacggct caattattcc agaggcacta aaaacaatat 3660 ggcggtccaa tacaagaact ggttacccgg acccttcttc agggatcagc aaatctatac 3720 aggggctagc aacatcaccc aaaacaacgt ttttaacgtt tgggacaaag gcaagcagtg 3780 ggtgatagac aatcggacca acctaatgca gcccggccct gctgcagcga ccacctttag 3840 cggagaaccc gaccgtcaag ccatgcaaaa cacgctggct tttagtcgga cggtctacga 3900 ccagacaact agtacggccg atcgtaacca gttgctcatt accaacgaag atgaaatcag 3960 acccaccaac tcggtcggta ttgacgtgtg gggagtagtt cccaacaacc aacagtccaa 4020 cgtgtcccct ggaaatcgca caggtgtcaa caaccaaggg gcgcttcccg ggatggtgtg 4080 gcaaaacaga gacatttacc tccaaggacc catttgggcc aaagtccccg acaccgacaa 4140 tcacttccac ccgtctcctc ttattggcgg attcgggtgc aagcaccctc ctccccaaat 4200 tttcattaaa aatacccctg tccctgccaa ccctccggaa acgttccaga cggccaaggt 4260 ggcctccttc atcaaccagt actcgaccgg acagtgcacc gtcgaaatct tttgggaact 4320 gaagaaggaa acctccaaac gctggaaccc cgaaatccag ttcacctcca actttggcaa 4380 cgcggccgac atccagttct ccgtctccga caccggactc tattccgaac ctcgtcccat 4440 cggtacccgt tacctcacca aaccgctgta aatttaaacc cttcaataaa ccgtttatgc 4500 gtaactgtac ttccgtctcc tgtcgttatt cggtcacatg atgcggcatt acctcaccgg 4560 agtgctggcc agtttccaaa acaggctcgc tcgctcactc ggggcgcgac gccaaaggcg 4620 tcgcagcgac cccttcgggg tcgcgccccg agtgagcgag cgagcctgtt ttggaaactg 4680 gcca 4684 //