ID GQ331138; SV 1; linear; genomic DNA; STD; VRL; 5112 BP. XX AC GQ331138; XX DT 08-FEB-2010 (Rel. 103, Created) DT 20-JUL-2011 (Rel. 109, Last updated, Version 3) XX DE California sea lion polyomavirus 1 strain CSL6994, complete genome. XX KW . XX OS California sea lion polyomavirus 1 OC Viruses; dsDNA viruses, no RNA stage; Polyomaviridae; Polyomavirus; OC unclassified Polyomavirus. XX RN [1] RP 1-5112 RX PUBMED; 20622238. RA Colegrove K.M., Wellehan J.F.Jr., Rivera R., Moore P.F., Gulland F.M., RA Lowenstine L.J., Nordhausen R.W., Nollens H.H.; RT "Polyomavirus infection in a free-ranging California sea lion (Zalophus RT californianus) with intestinal T-cell lymphoma"; RL J. Vet. Diagn. Invest. 22(4):628-632(2010). XX RN [2] RP 1-5112 RA Colegrove K.M., Wellehan J.F.X., Rivera R., Moore P.F., Gulland F.M.D., RA Lowenstine L.J., Nordhausen R.W., Nollens H.H.; RT ; RL Submitted (26-JUN-2009) to the INSDC. RL College of Veterinary Medicine, University of Florida, PO Box 100126, RL Gainesville, FL 32610, USA XX FH Key Location/Qualifiers FH FT source 1..5112 FT /organism="California sea lion polyomavirus 1" FT /host="Zalophus californianus (California sea lion)" FT /strain="CSL6994" FT /mol_type="genomic DNA" FT /country="USA" FT /isolation_source="tongue" FT /collection_date="24-Aug-2006" FT /clone="CSL6994-B" FT /db_xref="taxon:715223" FT CDS 96..248 FT /codon_start=1 FT /product="putative agnoprotein" FT /db_xref="UniProtKB/TrEMBL:D3IZT0" FT /protein_id="ADC34414.1" FT /translation="MKKILRLALCPDGVRLPACPGFAYWAVAPPSAGPFGPQPLLLLTR FT GAQPK" FT CDS 364..1386 FT /codon_start=1 FT /product="VP2" FT /db_xref="GOA:D3IZT1" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/TrEMBL:D3IZT1" FT /protein_id="ADC34410.1" FT /translation="MGALISVITELFGLAAATGFTTEAILSGEAAAAIEGLLDEVAYVS FT LVDGVTDLQALESFGISEELFNLYLDIPRGASEVLASLGEAAKGSIGEFGVLALSIAGA FT SLSPLSYTQAVPDMALQVWVPDVDYLFPGVSTFARYAQYLDPTYWGPDLLNHVSRLFWQ FT SLLSEGRRQIGHASRDLATTVGGTVQESLARFFENTRWAVSHVTGDWYAALHRYYGELP FT PLNPPQLSQLRKRIQRETGIDVAEEDKSHRPSANFVQKYSPPGGAGQRHAPDWLLPLLL FT GLYGDLTPTWKKEVEELEEIETEDEEDIPKKKQRSASLPGAKTPHKRRNRSVRRPNRRR FT " FT CDS 715..1386 FT /codon_start=1 FT /product="VP3" FT /db_xref="GOA:D3IZT2" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/TrEMBL:D3IZT2" FT /protein_id="ADC34411.1" FT /translation="MALQVWVPDVDYLFPGVSTFARYAQYLDPTYWGPDLLNHVSRLFW FT QSLLSEGRRQIGHASRDLATTVGGTVQESLARFFENTRWAVSHVTGDWYAALHRYYGEL FT PPLNPPQLSQLRKRIQRETGIDVAEEDKSHRPSANFVQKYSPPGGAGQRHAPDWLLPLL FT LGLYGDLTPTWKKEVEELEEIETEDEEDIPKKKQRSASLPGAKTPHKRRNRSVRRPNRR FT R" FT CDS 1277..2764 FT /codon_start=1 FT /product="VP1" FT /note="major capsid protein" FT /db_xref="GOA:D3IZT3" FT /db_xref="InterPro:IPR000662" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:D3IZT3" FT /protein_id="ADC34409.1" FT /translation="MKRTFPKRSKGAPPSQVPKLLIKGGIEVLDVRTGGDSITTIELFL FT NPRVGTPTEHEFGFSGKLTVATSDDDDKPGPSELPCYSLGKVQLPMLNEDMTGEKILMW FT EAVSCKTEVVGVGSLCNVHSLRKRIHGDTTSSAASQPIVGLNYHFFSVGGEPLQLQFLT FT ENYKTKYEKYAAPVGPLTGLAQVLDPRLKGILDKDGLYPVECWHPDPAKNENSRYFGTY FT TGGTETPPVMQITNSMTTILLDENGVGPLCKGDNLFLSCCDIAGFKYENANAMKFRGFP FT RYFSVTLRKRQVKNPYPVGSLLNSLFNKLTPEVDSQPMLGEHSQVEEVRVYQGTEPLPG FT DPDLERYIDKYGQQETKVPDEKSLIMEINKLQARLQYVRQTRGSRGPLEVVTFPYKDPP FT PPPPASPQPPPILSGHARGPLLTVEDSRDLPGLEGENRVGVISGHRSPRPLPALEGDNT FT GVISGHATGPLETIEDSDDATPSTVTHSNVVEFSMES" FT CDS complement(join(2824..4551,4852..5112)) FT /codon_start=1 FT /product="large T" FT /db_xref="GOA:D3IZT4" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003133" FT /db_xref="InterPro:IPR010932" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016392" FT /db_xref="InterPro:IPR017910" FT /db_xref="UniProtKB/TrEMBL:D3IZT4" FT /protein_id="ADC34413.1" FT /translation="MDRALNRKESRELMNLLGLPMSYYGHLPIMRKAFIQKSKEYHPDK FT GGDEDKCKKLTCLYRKLEDNIQKNKDYEDMWGNAGPSWRSNEIPRYGTPEWDQWWDAFN FT KDWGTEEDLHCHETLDPSDDENTQDSTPPKKKRKFDFPESVIQFLSKAIVSNKTYDKFA FT IGTNLDKSRSLYKKIQDKYNVRFISRHQIDDLGIILLLTAGKHRTSALENYCMKFCTYS FT YVCCRAVLNEREMYEVMSETPFQKLEESVEGGYFSTEEKEPTVSWVQIQDYALENDIED FT VLLLMGLYLELAKPLSNCMHCLEEKLQTHCKFHKEHHENAKLFKESRSQKNICQQAVDG FT VLAAKRVQLVQLSRNDLLCLRIKKLLSKMEILFGPKGNGDLKIYLAGAAWLHCLLPRFE FT DTVYDIIKAFTLNAPKNRYFLFQGPLNSGKTTLAAALLDLLGGKALNINIPKEKLSFEL FT GMAIDQFMVVFEDVKGDKSSDELPRGFGMSNLDDLRDYLDGCVPVNLEKKHLNKRSQIF FT PPGIVTSNHYEIPPTLKCRFVKILTFRKKLYLEKALQSSPYLLYNRIVQSGVTLLLLLI FT YHLSVEEFEDELQEQVTVWKQRIDQDVGDHLYRTFLARVAQGIDIRHGDVEEDDDRSTE FT CSEAMPSDSGVGSEAPSTQETTQQSHE" FT CDS complement(4552..5112) FT /codon_start=1 FT /product="small t" FT /db_xref="GOA:D3IZT5" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003354" FT /db_xref="UniProtKB/TrEMBL:D3IZT5" FT /protein_id="ADC34412.1" FT /translation="MDRALNRKESRELMNLLGLPMSYYGHLPIMRKAFIQKSKEYHPDK FT GGDEDKCKKLTCLYRKLEDNIQKNKDYEDMWGNAGPSWRSNEVSNEEKIGRGQEFWKNF FT DLCVRGVNRRCPCFMCKLKRRHIWRLQETRKPNCWGKCYCYTCYCLWFGFEEKNPSSGL FT VWIGMISELTWGDIMVSNSIYIF" XX SQ Sequence 5112 BP; 1459 A; 1144 C; 1038 G; 1471 T; 0 other; cttttttgca ggtgctgaaa gcctgaaggg ccagctgctg cttctccaac ttaaggaaat 60 aaggtaggtg gcaaaaaaag cctctggggc tttatatgaa aaaaattctg aggttggctc 120 tttgcccaga cggtgtccgg ttaccggctt gccccggatt tgcttactgg gccgtcgctc 180 ctcccagtgc cggcccattt ggccctcagc cactgttatt gctcacacgt ggcgcacagc 240 caaagtgaaa ctaaagtgga agctggccaa taacggcctc tgggccgctg ccagcttccc 300 gctttggcct acttttttgc ctctagaagc ctgctctaag gtaagatttc ttattttcta 360 ggtatgggag ctctgatttc ggttattaca gaactgtttg ggcttgccgc cgctacaggg 420 tttaccacag aagccatctt atctggagag gcagcagcag ctatagaagg cctcttggac 480 gaggttgctt atgtgtcctt ggttgatgga gtaacagatc tccaagcctt ggaaagcttt 540 ggaatttcag aggagttgtt caatctttat cttgacattc caagaggagc ctcagaagtg 600 ttagcatctt tgggagaagc tgcaaaagga tctatagggg aatttggtgt tctagctctt 660 agcatagcgg gggcctctct cagtcctctc tcctatactc aagctgttcc agacatggca 720 cttcaggtct gggtccctga tgtagattac ttgtttccag gggttagtac atttgctaga 780 tatgcacagt atttagatcc cacatattgg gggcctgatc ttttaaatca tgtatcaaga 840 ttgttctggc agtcattatt aagtgaaggg agacgccaaa tagggcatgc ctcgagagac 900 ctagcaacta cagttggggg tacagtacag gaatcccttg ctagattttt tgaaaacaca 960 aggtgggctg tatcacatgt aactggggat tggtatgctg ctttacacag gtattatggt 1020 gaattgcccc ctttaaaccc acctcagcta agtcagctta gaaagaggat acaaagagaa 1080 actggaattg atgtagcaga ggaggataaa agccatcgtc cctctgctaa ttttgttcaa 1140 aaatatagtc ccccaggtgg tgcaggccag agacatgccc ctgactggtt gctccctttg 1200 cttttaggcc tgtatgggga tttaactccc acttggaaaa aagaggtaga agagctagaa 1260 gagatagaaa ctgaagatga agaggacatt cccaaaaaga agcaaaggag cgcctccctc 1320 ccaggtgcca aaactcctca taaaaggagg aatagaagtg ttagacgtcc gaacaggagg 1380 agatagcatc actacaattg aactcttcct taatcccaga gtaggaacac caacagagca 1440 tgaatttgga ttcagtggaa agctgactgt ggctactagt gatgatgatg ataaacctgg 1500 gcctagtgaa ctcccatgtt atagccttgg aaaagtgcaa ttacctatgc ttaatgagga 1560 tatgactggg gaaaagattt taatgtggga agcagttagc tgcaaaacag aggttgtggg 1620 tgtaggatct ctgtgtaatg ttcactcttt aagaaaaaga atacatggag ataccacatc 1680 tagtgctgcc tcacagccaa ttgtaggcct caattatcat ttcttctcag ttgggggaga 1740 acctttgcaa ttacaatttc ttactgaaaa ttacaaaaca aaatatgaaa aatatgcagc 1800 acccgtggga cccctgacag gacttgccca ggtactagat cccaggctga aagggattct 1860 tgacaaagat gggctttatc ctgttgaatg ctggcatcca gacccagcca aaaatgaaaa 1920 ttctagatac tttggtacat atacaggtgg gacagagaca cctccagtga tgcagataac 1980 taactcaatg acaactatcc ttttagatga aaatggagta ggcccactat gtaaaggaga 2040 taatttgttt ctttcatgct gtgacattgc tggcttcaaa tatgagaatg ctaatgctat 2100 gaagtttaga ggcttcccca gatatttttc tgtgacactg agaaaaaggc aggttaaaaa 2160 tccatatcca gtagggtctt tgctgaacag tcttttcaat aaattaaccc ctgaggttga 2220 tagtcagcca atgcttggag aacacagcca ggtggaggag gtcagggttt accaaggtac 2280 tgagccttta ccaggagatc cagatttaga aagatatatt gataaatatg gacagcaaga 2340 aacaaaggtc ccagatgaaa aaagtttaat tatggaaata aataaactac aggcccgttt 2400 gcagtatgtc agacaaacaa gaggttcaag aggtcccttg gaggttgtaa ctttcccata 2460 taaagaccca cccccaccac cgcctgctag tcctcaaccc cctcctatct tatctggaca 2520 tgcaagagga cctctgctga cagtagagga ttccagggat cttcccggac tggaagggga 2580 aaacagggta ggggtgattt caggacatag aagccccaga ccacttcctg cattggaggg 2640 agacaacacg ggggttatat caggacatgc aacaggccct ttggaaacta tagaggattc 2700 agatgacgca accccctcta ctgtcaccca ttcaaatgtt gtggaattca gtatggagtc 2760 atgagatgtt ttttattatt ttattgttac atttgctaca ttttaagcca aaaaatacat 2820 gtgttattcg tgagactgct gtgtggtttc ctgtgtgctt ggcgcctccg accccacacc 2880 cgagtcgctt ggcatagctt cagagcactc agtacttctg tcatcatcct cttccacgtc 2940 accatggcgg atatcaatcc cttgggccac tcgagccagg aaggttctgt aaaggtgatc 3000 cccaacatct tgatcaattc tttgcttcca aactgtcacc tgttcctgca actcatcctc 3060 aaactcctct acagagagat gatatataag tagcaaaaga agggtaacac cactctgcac 3120 tattctgtta tacaaaagat aagggctact ttgcagagct ttctccagat aaagtttttt 3180 cctaaaagtt aaaattttta caaatctaca tttgagggtt gggggaatct cataatgatt 3240 cgatgtgaca ataccagggg gaaatatctg ggatcttttg ttgagatgct tcttctccaa 3300 atttactggc acacaaccat ctaaataatc ccttagatca tctaaattac tcatgccaaa 3360 acccctgggc agctcatcac tacttttgtc tcctttcaca tcctcaaaca caaccatgaa 3420 ttgatctatt gccattccaa gctcaaagct tagcttctct ttaggaatat taatatttag 3480 ggcctttcca cctaaaaggt caagaagagc tgcagccaga gtggtttttc cactatttaa 3540 aggcccttga aagagaaaat atctgttttt aggggcattc aaggtgaatg ccttaatgat 3600 gtcataaaca gtgtcttcaa atctgggcaa taagcaatga agccaagctg ctccagccaa 3660 atatatctta agatccccat ttcctttagg cccaaataat atttccatct tactcagtaa 3720 tttcttaatt ctcaaacaca gtagatcatt cctactcagt tgcacaagtt gtactctttt 3780 agcagctaaa acaccatcca cagcttgttg acaaatattt ttttgactgc ggctctcttt 3840 aaacaatttt gcattttcat gatgctcttt atggaattta cagtgtgtct gaagtttttc 3900 ttccagacaa tgcatacaat ttgataaggg ctttgcaagc tcaagataca atcccattaa 3960 taacagcaca tcctcaatat cattctccaa agcataatcc tggatttgaa cccatgaaac 4020 agtgggctct ttttcctcag tactaaaata tcccccctcc acagactcct caagtttttg 4080 gaaaggagtc tcactcatta cttcatacat ttccctctca tttaatacag ccctacaaca 4140 tacatagcta taggtacaga atttcatgca gtaattctca agagcactgg ttctatgttt 4200 accagcagtt aaaagaagaa taattcccag atcatcaatt tgatgcctac taatgaaacg 4260 cacattatat ttgtcctgta tctttttata gagacttcga ctcttatcaa gattagtccc 4320 aatagcaaat ttatcataag tcttattaga tacaatagct ttacttaaaa attgtataac 4380 actttccggg aaatcgaatt tcctcttctt ttttggtggt gtgctgtcct gggtattttc 4440 atcatctgag ggatccaatg tctcatgaca atgcaggtcc tcctcagtac cccaatcctt 4500 attgaaggca tcccaccatt ggtcccactc aggtgttcca taacgtggaa tctaaaaaat 4560 ataaatagag ttgcttacca taatgtctcc ccaggtgagt tcagaaatca tgccaatcca 4620 aacaagacca ctgctgggat tcttttcttc aaatccaaac caaaggcaat agcaggtata 4680 gcaatagcat ttgccccagc aattaggttt tctggtttct tgcagcctcc agatatgcct 4740 tctcttcagt ttacacataa agcaggggca tcttctattt acacctctca cgcagaggtc 4800 aaaatttttc cagaattcct gacctctccc tatcttttcc tcattactta cttcattaga 4860 tctccaggaa ggcccggcat ttccccacat atcctcataa tccttgtttt tctggatatt 4920 atcctccagc ttcctatata ggcaagtaag ctttttgcat ttgtcctcat cacccccttt 4980 atctgggtga tattccttgc ttttctgaat aaaagctttt ctcatgatag gcaaatgccc 5040 ataatagctc ataggaagcc ctagaaggtt cataagctcc ctagattcct ttctgttcaa 5100 ggccctgtcc at 5112 //