ID GQ149088; SV 1; circular; genomic DNA; STD; PHG; 6094 BP. XX AC GQ149088; XX DT 23-JUN-2009 (Rel. 101, Created) DT 23-JUN-2009 (Rel. 101, Last updated, Version 1) XX DE Enterobacteria phage St-1, complete genome. XX KW . XX OS Enterobacteria phage St-1 OC Viruses; ssDNA viruses; Microviridae; Bullavirinae; Alpha3microvirus. XX RN [1] RP 1-6094 RA Chantranupong L., Heineman R.H.; RT "Varying success of optimality in experimental adaptations of bacteriophage RT lysis time"; RL Unpublished. XX RN [2] RP 1-6094 RA Chantranupong L., Heineman R.H.; RT ; RL Submitted (12-MAY-2009) to the INSDC. RL Integrative Biology, University of Texas at Austin, 2401 Speedway, Austin, RL TX 78712, USA XX DR MD5; 282da9761e77216a9aec64432c45635a. DR EuropePMC; PMC3324380; 22429718. XX FH Key Location/Qualifiers FH FT source 1..6094 FT /organism="Enterobacteria phage St-1" FT /host="Escherichia coli strain K12" FT /mol_type="genomic DNA" FT /db_xref="taxon:10845" FT gene 758..2242 FT /gene="A" FT CDS 758..2242 FT /codon_start=1 FT /transl_table=11 FT /gene="A" FT /product="DNA replication initiation protein gpA" FT /note="viral strand synthesis protein; rf replication" FT /db_xref="GOA:C6K2F9" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/TrEMBL:C6K2F9" FT /protein_id="ACS44786.1" FT /translation="MATEIFSDVVKAVWSHVTAKHAHLRMAVQVDNRSRLLSDLVYQLE FT KRLSEETHLDGETLAVYESQTALLEDHMALVRKCAAQLDNSNTIDHRTPLDAECVFLFE FT MICPGVRYGKTLNSLWTKYVAQWPEKLIRHELDMVKPLSFKDEVAKYMEKMQEKTRKNR FT MTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNENPNALRDYFRTVGRAVLRAEGRS FT VKDSYNDCYRYLCVPEFGGQHGRLHWHVVHMVRTLPLGSHDPNFGRKVRNYRQINSFRG FT MWPYGFTQPIAVRYQHDAYSRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQ FT KAITERQKKCKNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPL FT YQIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKIIRRLMKKTPEFNWQSSIASMTV FT TLKNGDISDEARQYIIDAGITPTDLRAKATQAFGGK" FT gene 1271..2242 FT /gene="A" FT CDS 1271..2242 FT /codon_start=1 FT /transl_table=11 FT /gene="A" FT /product="gpA*" FT /note="stops host DNA synthesis; same frame as gpA" FT /db_xref="GOA:C6K2G0" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/TrEMBL:C6K2G0" FT /protein_id="ACS44787.1" FT /translation="MRIAHQKGWFFVFDTLTLADDRLQAFNENPNALRDYFRTVGRAVL FT RAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHVVHMVRTLPLGSHDPNFGRKVRNYRQ FT INSFRGMWPYGFTQPIAVRYQHDAYSRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAK FT QSDQRQKAITERQKKCKNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRIS FT FDSSPLYQIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKIIRRLMKKTPEFNWQSS FT IASMTVTLKNGDISDEARQYIIDAGITPTDLRAKATQAFGGK" FT gene 1804..2157 FT /gene="B" FT CDS 1804..2157 FT /codon_start=1 FT /transl_table=11 FT /gene="B" FT /product="internal scaffolding protein gpB" FT /note="capsid morphogenesis protein" FT /db_xref="GOA:C6K2G1" FT /db_xref="InterPro:IPR003513" FT /db_xref="UniProtKB/TrEMBL:C6K2G1" FT /protein_id="ACS44788.1" FT /translation="MQESINGNLSEERISGAQQSEARNGAPVNGSPEQQSASGTEPNQL FT RFQPSVSDSERERQKAIDLEHRRAAFARHFGCAPGSEKHVENYSSFDEKDTRVQLAEFY FT RFNDGHLKKWGYF" FT gene 2142..2318 FT /gene="K" FT CDS 2142..2318 FT /codon_start=1 FT /transl_table=11 FT /gene="K" FT /product="gpK" FT /note="non-essential protein" FT /db_xref="UniProtKB/TrEMBL:C6K2G2" FT /protein_id="ACS44789.1" FT /translation="MGIFLMKHVNTLLMQELRLLICELKRLRLSAVSDPDFSQEKIHAE FT LDSLLRKLSRHFD" FT gene 2269..2475 FT /gene="C" FT CDS 2269..2475 FT /codon_start=1 FT /transl_table=11 FT /gene="C" FT /product="gpC" FT /note="DNA maturation protein" FT /db_xref="GOA:C6K2G3" FT /db_xref="InterPro:IPR016407" FT /db_xref="UniProtKB/TrEMBL:C6K2G3" FT /protein_id="ACS44790.1" FT /translation="MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQW FT FQIEDWKGNHKKLLDDLKKRDYL" FT gene 2502..2954 FT /gene="D" FT CDS 2502..2954 FT /codon_start=1 FT /transl_table=11 FT /gene="D" FT /product="gpD" FT /note="external scaffold protein" FT /db_xref="GOA:C6K2G4" FT /db_xref="InterPro:IPR004196" FT /db_xref="UniProtKB/TrEMBL:C6K2G4" FT /protein_id="ACS44791.1" FT /translation="MNIVSDVNYATSVAALRMLQASAVLDITEEDFDFLTGDKIWIATD FT RNRARRCVEACVYGALDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLVMEGAEFSEN FT IINGVERPVNAAELFAYTLRIKAGFKETVIDAEENARQKLRANGLK" FT gene 2674..2901 FT /gene="E" FT CDS 2674..2901 FT /codon_start=1 FT /transl_table=11 FT /gene="E" FT /product="gpE" FT /note="host lysis protein" FT /db_xref="GOA:C6K2G5" FT /db_xref="InterPro:IPR007605" FT /db_xref="UniProtKB/TrEMBL:C6K2G5" FT /protein_id="ACS44792.1" FT /translation="MERWTLSAILAFLLLLSLLLPSLLIMFIPSTFRQHASLWKARSLA FT KTLLMASSVRLTPLSSSRTPCVLRQDSKKL" FT gene 2956..3030 FT /gene="J" FT CDS 2956..3030 FT /codon_start=1 FT /transl_table=11 FT /gene="J" FT /product="gpJ" FT /note="core protein" FT /db_xref="GOA:C6K2G6" FT /db_xref="InterPro:IPR006815" FT /db_xref="UniProtKB/TrEMBL:C6K2G6" FT /protein_id="ACS44793.1" FT /translation="MKKARRSPSRRKGARLWYVGGSQF" FT gene 3066..4361 FT /gene="F" FT CDS 3066..4361 FT /codon_start=1 FT /transl_table=11 FT /gene="F" FT /product="gpF" FT /note="major coat protein" FT /db_xref="GOA:C6K2G7" FT /db_xref="InterPro:IPR003514" FT /db_xref="UniProtKB/TrEMBL:C6K2G7" FT /protein_id="ACS44794.1" FT /translation="MSNVQTSAEREIVDLSHLAFDCGMIGRLKTVSWTPVIAGDSFELD FT AVGALRLSPLRRGLAIDSKVDFFTFYIPHRHVYGDQWIQFMRDGVDAAPLPSVTTTQYP FT DDAGYVGTIVPKSNRIPKFLHQSYLNIYNNYFRAPWMPERTEANPSNLDRDDSRYGFRC FT CHLKTIWSAPLPPETKLAEQMGIESNSIDIMGLQAAYAQLHTEQERTYFMQRYRDVISS FT FGGSTSYDADNRPLLVMHTDFWASGYDVDGTDQSSLGQFSGRVQQTFKHSVPRFFVPEH FT GVMMTLMLVRFPPISPLEHHYLVGRNNLTYTDLAGDPALIGNLPPREISYQDLFRDGRP FT GIKIKVAESIWYRTHPDYVNYKYQLLEGFPFLDDAPGTTSGDDLQKAILIDHNDYNACF FT QSQQLLQWNNQARYNVNVYRHIPTVRDSIMTS" FT gene 4395..4958 FT /gene="G" FT CDS 4395..4958 FT /codon_start=1 FT /transl_table=11 FT /gene="G" FT /product="gpG" FT /note="major spike protein" FT /db_xref="GOA:C6K2G8" FT /db_xref="InterPro:IPR003515" FT /db_xref="UniProtKB/TrEMBL:C6K2G8" FT /protein_id="ACS44795.1" FT /translation="MYQNFVTKHDTAIQTSRFSVTGSITPVAPTGNIPVINAGNITAEH FT AVVNLYANLTAGTSSDGSFIVAMKVDTSPSDPNCVISAGVNLSFAGTSYPIVGIVRFES FT AFDQPTSIAGSQIEHYPIEMSVGSGGVCSARDCATVDIHPRTFGNNVFVGVICSSAKWT FT SGRVLGTIATTQVIREYQVLQPLK" FT gene 5095..6093 FT /gene="H" FT CDS 5095..6093 FT /codon_start=1 FT /transl_table=11 FT /gene="H" FT /product="gpH" FT /note="minor spike protein" FT /db_xref="GOA:C6K2G9" FT /db_xref="InterPro:IPR006777" FT /db_xref="UniProtKB/TrEMBL:C6K2G9" FT /protein_id="ACS44796.1" FT /translation="MLGSIIGGIGSSLLGGLASGGISSLLNKMFSKMPEHAASSAGLTN FT GQGTIGMDTDAGIQSAIQGSNVPPAGQLPASNTSGVMADAGNMIRNAGRALLDGTIQAG FT SDKVKEALIDKLVGGNDAKDRGKATRDYLAAAFPELNPWERAGADASTAGLESSAQNQQ FT KEMLKMQLDNQKDIAKMQMNNNLQIAGIQSATSRQNTKDSVYAQNEMLQYNQRESQARV FT ASILANTDLTTKQATHEIMRMALTRAQETGQHLTNSQIMALEKKVYAEIGKIHQDTQNS FT RYGSSQVTAAAKDVTNMITDASSGFADWASQQWNSFFKDGKSDGIPLNTRK" XX SQ Sequence 6094 BP; 1415 A; 1329 C; 1426 G; 1924 T; 0 other; tgttgacatt ccctgagccc ttatgagact cttgcttcaa cgaaatgaag taggagtctt 60 ttttatgaag ccagctcacc gcctttatca ttctgtgctt ggttcttggt tgtttaagtg 120 ccctgtttat atccgttatg agtaccttca tcatggtcgt cttatcaagg ttcgcgccgt 180 tcgtgacctt tccccgcgtc agcagttgat tgccaatcct aaaaattgtt tgacgtcgtt 240 attgccgaga ttgacgttac tcacctttct gtcacttggt atgattttga ggctgaagag 300 tatgccgagt gtgattccgg cactatggaa cttcttcttt ctcaggtgaa ttctggtgag 360 gttattcgtt cttctgaaga tctgtttgtt gatgttgatg atatggattg gctttatgag 420 attgcggagt aaattatgga gactgttatc ggaaaattta ttgctctggc tgttgttgct 480 cttatgctgt atggaatttc ctgtttgatt cggaggttcc cgtgaaatat tttagtttgg 540 ttgatgaaca ttatgcttat tgccctgaga caaggattct gcatatcact cgtagtcgtg 600 tttctgaccc tcgttatgag cgtcgctttc ttactgatga ggagcatttt gcgcttttgg 660 attggttaaa aaatcgcccg acttatatta attcttgaca gacctttaaa atacccacta 720 tattgccctc gcaggtttac tacgagggct ttttcgcatg gctactgaaa tcttctctga 780 tgttgttaag gctgtttggt cgcacgttac ggccaagcat gctcatcttc gtatggctgt 840 tcaggttgat aatcgtagcc gccttctctc tgaccttgtt tatcagttgg aaaaacgtct 900 ttctgaagag actcatttgg atggtgagac tcttgccgtt tatgaatctc agaccgctct 960 tctggaggat catatggctc tggttcggaa gtgtgctgcc caacttgata atagtaacac 1020 tatagaccac cgtactcctc tggatgccga atgtgttttt ctgtttgaaa tgatttgccc 1080 aggtgttcgc tacggtaaaa cgttgaattc tctttggact aagtatgtag cccagtggcc 1140 tgaaaagttg attcgtcatg agcttgatat ggtcaagcct ttatccttta aggatgaggt 1200 tgctaagtac atggagaaaa tgcaggaaaa aacacgcaag aaccgcatga ctcagaaagt 1260 aattaatgag atgcgtattg ctcaccagaa aggctggttc tttgtatttg atacactgac 1320 ccttgctgat gaccgtttgc aggcttttaa tgaaaacccc aatgctcttc gtgattattt 1380 taggactgtt ggtcgagctg ttctgcgcgc tgaaggtcgt tcggttaagg attcctacaa 1440 cgactgctat cgttatcttt gtgtgccgga gtttggaggt cagcacggcc gtcttcattg 1500 gcacgttgtg catatggtgc ggactcttcc tttgggaagt cacgacccta atttcggtcg 1560 caaggtacgt aattatcgcc agattaactc gttccgtggc atgtggccct atggcttcac 1620 gcaaccgata gctgttcgct atcaacatga cgcttattct cgtaaaggtt ggctgtggcc 1680 tgttgacaaa tcaggaaaag caatgcagag taagccgtat caggcggtcg catggtatgt 1740 gaccaagtat gtagccaagc aatctgacca gcgtcagaaa gctattaccg agagacaaaa 1800 gaaatgcaag aatccattaa tggcaatctg tctgaagaaa gaatttcggg tgcgcagcag 1860 tcggaagctc ggaatggagc tcccgtcaat ggctcacctg agcaacaaag tgcttctgga 1920 actgagccga atcagcttcg attccagccc tctgtatcag atagtgaaag agaacgccaa 1980 aaagcaattg accttgaaca tcggcgcgct gcctttgcac gtcattttgg atgtgcgccc 2040 ggaagtgaga agcatgttga aaattattcg tcgtttgatg aaaaagacac ccgagttcaa 2100 ttggcagagt tctatcgctt caatgacggt caccttaaaa aatggggata tttctgatga 2160 agcacgtcaa tacattattg atgcaggaat tacgcctact gatttgcgag ctaaagcgac 2220 tcaggctttc ggcggtaagt gacccggatt tttctcagga gaaaattcat gctgagctcg 2280 actcgctatt acgcaagtta tcgcgccact ttgactaagc agttgatgtt tcttacaaaa 2340 gctgacttta ccaatgacga tgagaaatgg cttaacgcct ttggtaatct tctccgtcaa 2400 tggtttcaga ttgaggattg gaaaggcaat cataaaaaat tgcttgacga cttgaaaaaa 2460 cgtgattatc tttgactcga atcttacata aggagatacc tatgaatatt gtttctgatg 2520 ttaattacgc tacttctgtc gctgctcttc gtatgcttca ggctagcgct gttctggata 2580 tcactgagga agatttcgac ttcctgactg gtgataagat ttggattgcc accgaccgca 2640 accgtgcgcg tcgctgtgtg gaggcttgtg tttatggagc gctggacttt gtcggctatc 2700 ctcgctttcc tgctcctgtt gagtttattg ctgccgtcat tgcttattat gttcatcccg 2760 tcaacattca gacagcatgc ctcgttatgg aaggcgcgga gtttagcgaa aacattatta 2820 atggcgtcga gcgtccggtt aacgccgctg agctcttcgc gtacaccctg cgtattaagg 2880 caggattcaa agaaactgta attgatgccg aggaaaatgc tcgtcagaaa ttacgcgcaa 2940 atggactgaa atgatatgaa gaaagcacgt cgttctccta gtcgtcgtaa aggtgcccgc 3000 ctttggtatg taggcggttc tcagttttaa ttatgagccc ttcggggctc tttaaggaaa 3060 attaaatgtc taatgtacaa acttccgctg aacgtgaaat tgttgacctt tctcatcttg 3120 cctttgactg tggcatgatt ggtcgtttga aaactgtttc atggactcct gttattgctg 3180 gcgattcctt tgagcttgat gctgttggcg ctttgcgtct ttctcctctg cgtcgtggtt 3240 tagctattga ctctaaggtt gattttttca ctttctatat tccgcatcgc catgtttatg 3300 gtgaccagtg gattcaattt atgcgtgatg gtgttgatgc cgcaccactc ccttccgtta 3360 ctactactca gtatccggat gacgctggtt atgttggtac tattgttcct aagagcaacc 3420 gtattcctaa gtttttgcat cagtcttatc tgaatattta taataactat ttccgtgcgc 3480 cgtggatgcc tgagcgtact gaagctaatc cttcaaattt agaccgtgat gattctcgct 3540 atggattccg ttgctgccat cttaaaacta tttggtctgc tcctcttcct ccggaaacta 3600 agctcgctga gcaaatgggc attgaaagca attccattga tattatgggt ttgcaggccg 3660 cttatgcgca gcttcatact gagcaggagc gtacttattt catgcagcgt tatcgtgatg 3720 ttatctccag ctttggcggt tcaacctcct atgatgccga taaccgaccg ttgcttgtta 3780 tgcacaccga tttctgggct tccggttacg acgttgacgg taccgaccaa tcttccctcg 3840 gacagttttc gggtcgagtc caacagacgt ttaaacactc agtgcctcga ttcttcgtgc 3900 cggagcatgg tgtcatgatg actttgatgc tggttcgctt cccgcctatc agtcctttgg 3960 agcatcatta tcttgttggt cgtaataatt tgacttatac cgaccttgcg ggtgacccgg 4020 ctttgattgg taatttgccg ccacgtgaga tttcttatca ggatcttttc cgtgatggtc 4080 gtccgggcat taagattaag gttgccgagt ctatctggta tcgtactcat ccggattatg 4140 ttaactacaa gtatcagtta cttgaaggtt ttccgttcct tgatgatgcg cccggtacga 4200 ctagtggtga tgaccttcag aaggctattc tcattgacca taatgactat aatgcctgtt 4260 tccagtctca gcagttgctt cagtggaata atcaggctcg ttataatgtc aatgtttatc 4320 gtcatattcc tactgttcgt gattctatta tgacctcttg attcatgggc cttcgggccc 4380 attaaggatt tttcatgtat caaaattttg ttactaagca cgataccgcc attcagacat 4440 cccgtttttc tgttactggt agtatcactc ctgttgcgcc tactggtaat atccctgtta 4500 tcaatgctgg taatattact gctgagcatg ctgttgttaa tctttatgct aatttgaccg 4560 ctggcacttc ttctgatggt tcttttattg ttgctatgaa ggttgacacc tctccttctg 4620 accctaactg cgttatctct gctggtgtta accttagctt tgctggtacc tcatacccga 4680 ttgttggtat tgttcgtttt gagtctgctt ttgaccagcc cacttctatt gctggtagtc 4740 agattgagca ttacccaatt gaaatgtctg taggttctgg tggtgtttgt tctgctcgcg 4800 attgcgctac tgttgatatt catcctcgca cttttggcaa taatgttttt gttggtgtga 4860 tttgttctag tgctaaatgg acctccggtc gtgtgcttgg taccatcgct acgactcagg 4920 ttattcgtga gtatcaggtc cttcagccgc ttaaataaaa ggccgccgca ctcccggtta 4980 tgtgtctgcc cagtgtaggg cggaccgagc cgtacggaga tacccgataa actaggaacg 5040 tggaaggcgt tagccgcctt ccctcctgct aagcccaaaa aaggagctta caatatgctt 5100 ggaagtatca ttggaggtat tggctcatcg ctgctcggag gacttgcttc cggcggtatc 5160 tccagtctcc ttaataaaat gtttagtaaa atgccagaac acgccgcctc ttctgctggc 5220 cttactaatg gtcaaggaac tattggtatg gatactgacg ctggcattca gtctgctatt 5280 cagggctcta atgttcctcc tgctggtcaa ttgcctgcct ctaatacctc tggtgttatg 5340 gctgatgctg gtaatatgat tcgtaatgct ggcagagctt tgcttgacgg tacgattcag 5400 gccggttctg acaaggttaa agaggctctt attgataagt tggttggagg taatgatgct 5460 aaagaccgag gaaaggcaac ccgtgattac ttggcagcgg ctttccctga gctcaaccca 5520 tgggaacgtg ctggagctga tgcttccact gccgggttag agtcttccgc tcagaatcaa 5580 caaaaagaga tgcttaaaat gcaactggat aaccagaagg atattgccaa gatgcagatg 5640 aataacaatt tgcagattgc tggcattcag tccgctacat ctcgccagaa tacgaaggat 5700 tctgtttatg cccagaatga gatgcttcag tataatcaac gtgagtcgca ggcacgcgtt 5760 gcgtccatcc tcgccaacac tgaccttacg actaagcagg ccacccatga aattatgagg 5820 atggctctta cccgcgctca ggagactggt cagcatttga ctaactctca gattatggct 5880 ttggagaaaa aggtttatgc agaaattggc aaaattcatc aagatactca aaattctcgc 5940 tatggtagct ctcaagttac tgccgcagcg aaagacgtta cgaatatgat tactgacgcc 6000 tcttcaggct ttgctgattg ggcctctcag cagtggaatt cattctttaa ggatggtaag 6060 tctgatggta ttcctctcaa taccagaaaa taac 6094 //